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Report for Sequence Feature Glyma.03g001200

Feature Type:gene_model
Chromosome:Gm03
Start:147739
stop:153075
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g001200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G77030.1AT hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases JGI N/AIEA
GO:0010501GO-bp RNA secondary structure unwinding EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0005730GO-cc nucleolus EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding JGI N/AIEA
GO:0004004GO-mf ATP-dependent RNA helicase activity EnsemblGenomesN/AIEA
GO:0004386GO-mf helicase activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0008026GO-mf ATP-dependent helicase activity JGI N/AIEA
GO:0016818GO-mf hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides JGI N/AIEA
KOG0337 KOG ATP-dependent RNA helicase JGI N/AIEA
PTHR24031Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24031:SF17Panther JGI N/AIEA
PF00270PFAM DEAD/DEAH box helicase JGI N/AIEA
PF00271PFAM Helicase conserved C-terminal domain JGI N/AIEA
PF08147PFAM DBP10CT (NUC160) domain JGI N/AIEA

Expression Patterns of Glyma.03g001200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.03g001200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g00350 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g001200
>Glyma.03g001200.1 sequence-type=CDS polypeptide=Glyma.03g001200.1.p locus=Glyma.03g001200 ID=Glyma.03g001200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGACGCGAAGCGACGAAGAAGAAGAAGATGAATAAGAATGCAAAATCTGGGGGTTTTGAATCACTTGGTCTGAATCCCAATGTGTTCAAAGGAATCAAGCGCAAAGGGTACAAAGTGCCCACTCCGATTCAGCGGAAGACCATGCCCCTCATCCTTTCTGGCTCCGACGTCGTTGCCATGGCTCGCACTGGCTCTGGCAAAACGGCGGCGTTTCTTGTCCCCATGCTTCACCGCCTCAACCAGCATATCCCTCAGTCTGGTGTCAGAGCCCTCATTCTATCCCCTACCAGGGACTTGGCCCTTCAGACTCTCAAGTTCACCAAAGAGCTTGGCCACTTCACAGACCTTCGTGTTAGTTTGTTAGTTGGTGGAGATAGTATGGAGATTCAGTTTGAGGAATTAGCTCAGAGTCCTGACATCATAATTGCCACTCCTGGTAGGCTCATGCACCATTTGTCTGAGGTTGATGACATGTCATTGCGCAGCGTCGAGTATGTTGTTTTCGACGAGGCTGATTGTTTATTTGGCATGGGTTTCGCCGAGCAGTTGCATCAGATTCTTGCTCAGCTCGGGGAGAACCGTCAGACCTTGCTTTTCAGTGCCACACTGCCCAGTGCCCTTGCTGAATTTGCCAAGGCTGGTTTGAGAGACCCTCAGCTTGTCCGCCTTGACTTAGAAACTAGAATTAGCCCTGACTTGAAGCTTGCCTTCTTCACTTTGAGGCAGGAGGAGAAGTACTCCGCCTTGCTCTATTTGGTTCGGGAGCACATTGGTTCTGATCAGCAGACATTGATTTTTGTGTCCACCAAGCATCATGTGGAGTTTCTCAATGTTTTGTTTCGCGAAGAGGGTATTGAGCCATCTGTGTGTTATGGCGACATGGACCAAGATGCTCGCAAAATCCATGTATCGAGGTTTAGGGCTAGAAAGACAATGTTGTTGATTGTGACAGATGTTGCGGCCCGGGGCATTGACATTCCATTACTTGATAATGTTATCAATTGGGACTTTCCCCCCAAGCCTAAAATATTTGTCCATCGAGTTGGAAGGGCTGCAAGGGCTGGTCGAACTGGGACTGCATATTCTTTTGTGACTCCTGAGGATATGGCTTACCTTTTGGATCTTCATTTGTTTCTTTCGAAACCAATCAAACCTGCTCCCACCGAAGAAGAGTTCTTGCAGGATATGGATGGAGTAATGTCTAGATGTGAACAGGCAATGGCAAATAGAGAAACCATTTATGGTCGTTTCCCACAAAAAGTCATCGACCTTGTTTCAGACAGAGTTAGGGAAATTATTGATACTTCTGCGGAACTGGAATTATTGCAGAGAACCTGTAAAAATGCATTTCGTTTATATTCAAAAACAAAACCCTTACCCGCAAAGGAGTCCATTAGAAGAGTAAAGGATTTGCCTCATGAAGGGCTGCATCCAATGTTCATGAATGTGTTGGAAACAGGGGAGTTAACGGCACTTGCATTTTCTGAGCATTTGAAAAAGTTTAGGCCAAAGCAGACTATTTTGGAAGCTGAAGGGGAAGCAGCTAAATCAAAGCATCAACAGGGCCCTTCTGGCCAATGGGTCGATGTGATGAAAAGGAAAAGAGCCATTCATGAGAATATTATAAATTTGGTTCGTGAACAGCAGCAGTCTAAGAGTAATAAGGAAAAGGAGGAAATTCAATCAGAAATCAGTCCTTCCATGGAGAAAGGAAGAAAAGCACGTGGTTCTAAGAGGAAGCCCCAAAGTTTCAAGGATGAGGATCACTATATAAGTTCAATACCAAAAAATCAACATATGGAGGCTGGCCTTACAGTAAAAGCTAATGAAGACTTTGCTTCTAATAGATTGGAAGCAGCTGTCCTTGATCTAGTGGCAGATGATGGTACTGGCATTAAGAAACAAAGATCTATGTATCACTGGGATAAGAGGGGTAAAAAGTACATCAAGTTAAACAATGGTGACCGTGTTGCTGCAAATGGAAAGATAAAGACAGAGAGTGGTGCAAAAACAAAGGCAAACAAGACTGGTATATATAAGAAGTGGAAAGAACGCTCACATGGTAGGATATCACTTAAAGGGACAAATAATGATGGTGATTCTCAGGAATCAACAAGTTTGGCAGGATCTTACCAAAGAGGTCGTAGGAATTTTAAAGGCAGCAAGAAGCAGCATTCAATGCCCAATGCTCATGTGCGTTCAGAGATCAAAGATATGGATCAAATTCGAAAGGAGAGGCAGACAAAAGCCAACAGGGTTTCTTATATAAAGAGCAAGTCGACAAAGGGTAAAAAGTTTGGTAAAAATGGTAAAAAAAGAAAAGGCAAATAG
Predicted protein sequences of Glyma.03g001200
>Glyma.03g001200.1.p sequence-type=predicted peptide transcript=Glyma.03g001200.1 locus=Glyma.03g001200 ID=Glyma.03g001200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGREATKKKKMNKNAKSGGFESLGLNPNVFKGIKRKGYKVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLVPMLHRLNQHIPQSGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMEIQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCLFGMGFAEQLHQILAQLGENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETRISPDLKLAFFTLRQEEKYSALLYLVREHIGSDQQTLIFVSTKHHVEFLNVLFREEGIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTPEDMAYLLDLHLFLSKPIKPAPTEEEFLQDMDGVMSRCEQAMANRETIYGRFPQKVIDLVSDRVREIIDTSAELELLQRTCKNAFRLYSKTKPLPAKESIRRVKDLPHEGLHPMFMNVLETGELTALAFSEHLKKFRPKQTILEAEGEAAKSKHQQGPSGQWVDVMKRKRAIHENIINLVREQQQSKSNKEKEEIQSEISPSMEKGRKARGSKRKPQSFKDEDHYISSIPKNQHMEAGLTVKANEDFASNRLEAAVLDLVADDGTGIKKQRSMYHWDKRGKKYIKLNNGDRVAANGKIKTESGAKTKANKTGIYKKWKERSHGRISLKGTNNDGDSQESTSLAGSYQRGRRNFKGSKKQHSMPNAHVRSEIKDMDQIRKERQTKANRVSYIKSKSTKGKKFGKNGKKRKGK*






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