Glyma.03G162500

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Report for Sequence Feature Glyma.03G162500

Feature Type:	gene_model
Chromosome:	Gm03
Start:	37722449
stop:	37723448
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.03G162500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G31230.1	AT	ethylene-responsive element binding factor 15	JGI	N/A	IEA
GO:0006351	GO-bp	transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	JGI	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	EnsemblGenomes	N/A	IEA
GO:0003700	GO-mf	DNA binding transcription factor activity	EnsemblGenomes	N/A	IEA
GO:0003700	GO-mf	sequence-specific DNA binding transcription factor activity	JGI	N/A	IEA
PF00847	PFAM	AP2 domain	JGI	N/A	IEA

Proteins Associated with Glyma.03G162500

Locus	Gene Symbol	Protein Name
	ERF24	Ethylene-responsive factor gene 24

Expression Patterns of Glyma.03G162500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.03G162500

Paralog	Evidence	Comments
Glyma.19g163800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03G162500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g162500	Wm82.a4.v1	ISS	As supplied by JGI
Glyma03g31920	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.03G162500

Limit To All Plant Sequences

>Glyma.03g162500.1 sequence-type=CDS polypeptide=Glyma.03g162500.1.p locus=Glyma.03g162500 ID=Glyma.03g162500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTTTAATTCTTCTCTATTTTCATGCCAAAGTCTAGAATCCCATCTCAATTCATGGGAAGAGCTGTTTTCGTTCAACAACCTTCCCTTGAATGCAACAAATGAATCGTCCTTGGACTCCAAATCTTCATCCTCCAATGAAGGAATAATGGAGTCACAAGAAATCACCTCCAATATTACATGTGACGGCCACGTTGAAGAAAAATATTCACCACCACCATCACTACTAGATGGTTCTAAGCGAGAGAAGAGGACCTATAGAGGAGTAAGAAGCAGGCCATGGGGAAAATTCGCAGCAGAAATAAGAGACCCCACAAGAAATGGGGTTCGAGTATGGATTGGAACATTTGTCTCTGCTGAAGAAGCTGCTTTGGCTTATGACCAAGCAGCTTTCTTGACAAGGGGTGTTCTGGCTACCCTTAACTTTTCAGTGCAAGTGGTGATGGAGTCCCTTCAAGACATGGGTTTCAAGGCATTGAAAAATGATCTCTCACCCGTGTTGGCACTCAAGAGGATGCACGTGACGAGAACAAAATCTAGGGCTAGTAGGAGTGGAAACAAAAAGGTTAAAAGGGCTTGCGGCAGCAACGGGAAATGGGACACTAGTACTCAAAATTTGTTGGTGTTGGAGGATTTGGGTCCTGAATACCTAGACCAACTTTTGAGCTTCACTTGCCCTGGTTCTTGGTGCTGA

Predicted protein sequences of Glyma.03G162500

Limit To All Plant Sequences

>Glyma.03g162500.1.p sequence-type=predicted peptide transcript=Glyma.03g162500.1 locus=Glyma.03g162500 ID=Glyma.03g162500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDFNSSLFSCQSLESHLNSWEELFSFNNLPLNATNESSLDSKSSSSNEGIMESQEITSNITCDGHVEEKYSPPPSLLDGSKREKRTYRGVRSRPWGKFAAEIRDPTRNGVRVWIGTFVSAEEAALAYDQAAFLTRGVLATLNFSVQVVMESLQDMGFKALKNDLSPVLALKRMHVTRTKSRASRSGNKKVKRACGSNGKWDTSTQNLLVLEDLGPEYLDQLLSFTCPGSWC*

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