SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G40950.1 | AT | Basic-leucine zipper (bZIP) transcription factor family protein | JGI | N/A | IEA |
| GO:0006355 | GO-bp | regulation of transcription, DNA-templated | EnsemblGenomes | N/A | IEA |
| GO:0006355 | GO-bp | regulation of transcription, DNA-templated | JGI | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003700 | GO-mf | DNA binding transcription factor activity | EnsemblGenomes | N/A | IEA |
| GO:0003700 | GO-mf | sequence-specific DNA binding transcription factor activity | JGI | N/A | IEA |
| GO:0043565 | GO-mf | sequence-specific DNA binding | JGI | N/A | IEA |
| PTHR13301 | Panther | X-BOX TRANSCRIPTION FACTOR-RELATED | JGI | N/A | IEA |
| PTHR13301:SF22 | Panther | JGI | N/A | IEA | |
| PF00170 | PFAM | bZIP transcription factor | JGI | N/A | IEA |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| BZIP38 | bZIP transcription factor 38 | |
| bZIP21 | Basic leucine zipper transcription factor-like protein gene 21 |
|
Glyma.03G123200 not represented in the dataset |
Glyma.03G123200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.19g126800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g123200 | Wm82.a4.v1 | ISS | As supplied by JGI |
| Glyma03g27865 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.03g123200.1 sequence-type=CDS polypeptide=Glyma.03g123200.1.p locus=Glyma.03g123200 ID=Glyma.03g123200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGACTGAGTCAATGCCCGCCGTGGAACCGTCGCCGGAGCCTCCGGCGTCCGATATCGTGTTCGATGACTTCTCCACCGACTTCAGCGCCTTCCCCATCCCCTCCATGGACTCGCTCTTCAACACTACTGATGGGCTCCCCTTCCCCTCCGATCTCGAATTCGGCATGGATTTCAACAACAACAACGGAGAATTCGAAATCACCTTCGACGACCTCGATGACATCTACATCCCCTCCGACGCCGAGGATTTCCTCCTCCCCGACGCCTGTAACCCTAATTACGCCTCCGTTTCGCCGCCCATCGACGATTCCTCCGCGAAGAATTCCGATTCCGACGCATCCGCGGTTTCCGGCGACGGCGTTTCCAGGTTTTTCAATTCGCAAGTGTCGGAATCTGATTCCGCCGATAATGTTAGGGTTCCGAGCGTTCCTTCGCCGGAGGCTGAATTCTGCGAACGGGAGGAGTCTTCCAACGGACCGGTTTCGTCGCAGGGTTCCGGCAACGGCGGATCGGGTGTATACGAGGCCATGCACTCGCCCTCACCTGATTCTGGCCCTTACGAGAGAGACATAACATCGTTTCATGCACATGCAGCTACAAACAATGGTGTGAAAATGGAGGAAGTTCCAGCTTTTGATCTGAAGAGGAAGAAAGGGAGTTGCGAGGGAAGTGCTACCAAGCACAGAAGGTTCTCTTCCTCTGTGGAGAATAATAATAATAATAAGACTGAGAAACAGTTTCAATCTGATTTGAATGGAATTGAAGACGAGGATGAGAAGAGGAAGGCGAGGTTGATGAGGAACAGGGAAAGTGCACAGCTTTCTAGGCAGAGGAAGAAGCATTACGTGGAGGAGCTTGAAGAGAAAGTTAGATCATTGAATTCCATCATTGCTGATATGAGTAGTAAGATGTCGTATATGGTGGCTGAGATTGCTACTCTTAGACAGCAAGTGGGTGCTGCTGCTGGTGTGATGTGTCCTCCTCCTCCTCCTCCTGCTCCTGGGATGTACCCTCATCATCCTCCAATGGCACCCATGCCTTATCCATGGATGCCATGTGCTCCTTATGTTGTTAAGCCTCAAGGGTCTCAGGTTCCTTTGGTTCCCATTCCTAGGTTGAAGCCTCAGCAACCTGCTTCAGCCCCCAAGAGTAAAAAGAGTGAGAGTAAGAAGAGTGAGGGGAAAACTAAGAAGGTTGCTAGTATTAGTTTGTTGGGTTTGTTTTTCTTTATCATGCTTTTTGGTGGGCTTGTTCCTGTTGTTGATTTTAGGTTTGGGGGTTTAGTGGACAATGTTCCCGGTACTGGTAGTTCTAATTATGTTAGTGATAGGGTGTATGGTCATGGTGGAGGGAAGGTTTGGTCTTTGAATGGTCCTAGGAATGGGTCTGGAAGAGATGGGGATGTAGGATTTTCTAATGGGAGGTTTAGTGTTTCTGACAGAGTGAAGAATTATGAGAAGAGAGGCCGGAATTTAAGAGAAGAAAGGCATGATCGGAAAGGCCCAGATGATTCCAGTCGTCAGGGCAATGCTAGTGAGCCCCTTGTTGCTTCTCTGTATGTTCCTAGGAATGATAAGATGGTGAAGATTGATGGGAACTTGATTATCCATTCCATTATGGCCAGTGAGAAAGCCATGGCATCTCAAACTGCTGAGGCAAAGAAGGACAAGAGGGAAACTGGGTTGGCCATTCCTAAGGATTTGGATTCTGCATTGGCTATTCCTGGAGTTGGAAGAAGCAGAGATCAACATCCACATGTGTATAGGGTTTCTCCTGAACAGAGGAAGGCTCTTGGCTCTGGTTCAACCAAAGCTTTGAAGGACCATATGAAGTCCTCTGCAACTGATGGTAAAATGCAACAGTGGTTCCGTGAAGGTCTTGCAGGGCCAATGTTAAGTTCTGGCATGTGCACTGAAGTTTTCCAGTTTGATGCTTCTCCAAGTCCTGGAGCAATAGTTCCTGCAACATCAGTAGCCAATGTTTCCACCGAAAACCATCAGAATGCTACCAGTGTTAAGAAGACCAGGAATAGAAGAACCCTTCATGAGCTCCCAGAGCCGCTTAATGGGTCTAGTCTGAACATAACTGAAGAACAAGTGAAAAATTTGCAGAAAGACCACTTCCATGGTAACAAGTCTTCTATGGTGGTTTCAGTCCTTGTTGATCCCAGAGAGGCTGGTGATGGTGATGTTGATGTTGATGGCATGATGAGGCCAAAGTCACTCTCTCGGATTTTTGTGGTTGTGCTAATTGATAGTGTCAAGTATGTCACTTACTCGTGTGGTCTGCCTCGTGCTTCTCCTCATTTAGTGACTGGTTATGTATGA
>Glyma.03g123200.1.p sequence-type=predicted peptide transcript=Glyma.03g123200.1 locus=Glyma.03g123200 ID=Glyma.03g123200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MTESMPAVEPSPEPPASDIVFDDFSTDFSAFPIPSMDSLFNTTDGLPFPSDLEFGMDFNNNNGEFEITFDDLDDIYIPSDAEDFLLPDACNPNYASVSPPIDDSSAKNSDSDASAVSGDGVSRFFNSQVSESDSADNVRVPSVPSPEAEFCEREESSNGPVSSQGSGNGGSGVYEAMHSPSPDSGPYERDITSFHAHAATNNGVKMEEVPAFDLKRKKGSCEGSATKHRRFSSSVENNNNNKTEKQFQSDLNGIEDEDEKRKARLMRNRESAQLSRQRKKHYVEELEEKVRSLNSIIADMSSKMSYMVAEIATLRQQVGAAAGVMCPPPPPPAPGMYPHHPPMAPMPYPWMPCAPYVVKPQGSQVPLVPIPRLKPQQPASAPKSKKSESKKSEGKTKKVASISLLGLFFFIMLFGGLVPVVDFRFGGLVDNVPGTGSSNYVSDRVYGHGGGKVWSLNGPRNGSGRDGDVGFSNGRFSVSDRVKNYEKRGRNLREERHDRKGPDDSSRQGNASEPLVASLYVPRNDKMVKIDGNLIIHSIMASEKAMASQTAEAKKDKRETGLAIPKDLDSALAIPGVGRSRDQHPHVYRVSPEQRKALGSGSTKALKDHMKSSATDGKMQQWFREGLAGPMLSSGMCTEVFQFDASPSPGAIVPATSVANVSTENHQNATSVKKTRNRRTLHELPEPLNGSSLNITEEQVKNLQKDHFHGNKSSMVVSVLVDPREAGDGDVDVDGMMRPKSLSRIFVVVLIDSVKYVTYSCGLPRASPHLVTGYV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
