SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G02080.2 | AT | transcription regulators | JGI | N/A | IEA |
| GO:0000288 | GO-bp | nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | EnsemblGenomes | N/A | IEA |
| GO:0017148 | GO-bp | negative regulation of translation | EnsemblGenomes | N/A | IEA |
| GO:0000932 | GO-cc | P-body | EnsemblGenomes | N/A | IEA |
| GO:0030015 | GO-cc | CCR4-NOT core complex | EnsemblGenomes | N/A | IEA |
| GO:0032947 | GO-mf | protein-containing complex scaffold activity | EnsemblGenomes | N/A | IEA |
| KOG1831 | KOG | Negative regulator of transcription | JGI | N/A | IEA |
| PTHR13162 | Panther | CCR4-NOT TRANSCRIPTION COMPLEX | JGI | N/A | IEA |
| PF04054 | PFAM | CCR4-Not complex component, Not1 | JGI | N/A | IEA |
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Glyma.03G118400 not represented in the dataset |
Glyma.03G118400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.07g108700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g118400 | Wm82.a4.v1 | ISS | As supplied by JGI |
| Glyma03g27270 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.03g118400.1 sequence-type=CDS polypeptide=Glyma.03g118400.1.p locus=Glyma.03g118400 ID=Glyma.03g118400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCCATGCATCCGATCGAATGACAGCAAAAGTAACCTTCTTCTTCTCACTCAAATCTCACGCAGTCTCTGTTCCAATTTCAGCTTCCCTATGATGACTCATTATCATTCCTTGCCCACCATGGCCAACACTTCCTCCAACCATATTCGCTTTCTCCTCAGCACCTTGAACGAAGTCAACTTTGACTCCGTTTTCCATCAACTCTCTCAGTTCACGGAATTTGGAACTACTGGATGCATTTTGCTGCTTCAAACTTGCTTGGATCACTATGGTTATGTCAGAAGAGATATGAAAGATGTGCAGCATGAACCAATTCTTGGGGCAGTCATTAAGCACCTCTTGGACAAACCAAACTTCAGCACAGTGTTTTCTGAGTCAATGAAGAATATAGAAATTAATGAAAGCTTTTTAGAAAGTTTTTGCAATGGATTGCAGTTATCTTTATTGGAAAAAATTATAAGCAGTCTTGCTTTATCTGATTCTGAGAATTCCGATGTCAGGCTGTGTGGCAAAATTTTTTGCATGGCTCAAATTGAGGAATTGTGTGCCAACCCCGGTTATCTGAGTTTCCATGAGCAAATTCACAATGTTATCATGTTCCTAAAGCAGTCTGAGGGTCTTTCCAAGCACGTGGATTCCTTTATGCAGATATTGTCACTTGTGCAGTTCAAAGACACACCACCTTTTGTCTTGACTCCATTGCTTCCTGATGAGATGCATGAGGCTGATTTTTTAAGGAATATGGAGTTGTTCCATGACAGTGGAGAAAATGATTTTGATGCTATTTTGGCTGACATACAGAAGGAAATGAACATGGGTGATATCGTGAAGGAACTAGGCTATGGATGCACGGTGGATGTCTCACAGTGCAAGGAAATATTTTCACTCTTCTTACCTTTAACTGAAAATACACTCTCTAAATTGCTTGGTGCTATTGCTTGTACCCATATTGGGCTGGAGGACAACCAAAACACATACTTAACTTTTCGTGCAGCCCATGGATACAATGTGCCTGAGTTGCCACCGCTGAACTCTTGGAATATTGATGTCTTGATTGATACACTTAAGCATCTTGCACCTCATACTAATTGGGTACGTGTTATTGAAAACCTTGATCATGAAGGGTTTTTTCTTCCTAGTGAAGAAGCGTTCTCTTTTCTCATGTCTGTATATAAGCATGCCTGTAAGGAACCATTTCCTCTCCATGCCATCTGTGGGCCAGTCTGGAAGAATACTGAGGGTCAGCTGTCTTTCCTTAAATATGCTGTATCAGCACCACCGGAAATTTTTACCTTTGCACACTCGGGAAGGCAGCTGGCATATGTTGATGCAATTAATGGCCACAAGCTTCAAAATGGACATGCAAATCATGCATGGCTGTGTCTTGATCTTTTAGATGTCCTCTGCCAGCTAGCTGAAAAGGGTCATGCCAGTATTGTTCGATCAATCTTTGATTATCCCCTTAAACACTGTCCTGAAGTTTTGCTTCTTGGGCTGGCACATATTAATACTGCCTACAACCTCTTGCAGCAGGAAGTATCTCTGATTGTTTTTCTCATGATTGTAAAAAGTGGTGTAGGCAGTGGGATGATTCTACACCTTTGGCATGTTAATCCCAATCTGGTATTGAGAGGGTTTGTTGATTCTCAAAACAATGATGCAGACAGCATTGTAAGAATTGTGGACATCTGCCAGGAGCTAAAGATTCTATCATCTGTGGTGGAAATCATGCCCTCTTATTATAGTATAAGGTTAGCAGCTGTAGCATCAAGAAAAGAATTTCTTGACCTTGAGAAGTGGTTGAGTAGCAACTTAACTACATACAAGGAAGCCTTTTTTGAGGAGTGCCTCAAGTTCTTAAAGGATTCCCATTTTGGTGGATCACAGAACCTTTCTGGCAAATCGTTTCATCAGTCTGGTGCTATTCTGAGTCTATATGCTGAGGCAGCTGCTACCATCTTGAAGGTTCTTAAATCTCACACCGACTTGGTTGCTTCTAGACAACTTTCTGAGGAGTTGGAGAGACTGCACGTATCTATTATAGATACGAATCCAAGGCTTCAAAATGGTGGGACAGCTGATTCATCTACTTCTGATGGATATGCGGATGACATTGAAGCTGAAGCAAACTCTTACTTCCATCAAATGTTTTCTGATCAGTTAACCATTAATGCAATGGTACAGATGCTCGCTCGATTCAAGGAATCTTCAGTGAAGAGGGAGAAATCAATTTTTGAATGCATGATTGCAAACTTGTTTGAGGAGTATAGATTTTTCCCAAAGTATCCTGAAAGGCAACTCAAAATTGCTGCAGTTCTCTTTGGTTCTGTGATCAAGCATCAGCTTGTAACTCATCTATCTTTGGGGATTGCTCTTCGTTATGTTCTTGATGCATTGCGCAAGCCTGCAGATTCGAAAATGTTTTTGTTTGGAAGTCTGGCATTGGAACAGTTTGTGGATCGTCTTATTGAGTGGCCTCAGTATTGCAATCATATTCTTCAAATTTCTCATTTGCGCAGTACACATTCAGAAATAGTTTCTTTCATTGAGCAGGCTCTCGCCAGGATTTCCTCTGGTCATTTGGATGTTGATGGGGCGAGTCATGCTTCTGTTATTAGTAACCATCATTCTGCACAGGCTACAATAGGACATGTGGAGCTCAGTGGCTCTAGTGTTATACAACCTGGGCAGCAACATTTGTCACTGCAGCTTCAACAGAGACGTGAAAATCCCTTGGATGATCGTCACAAAGCTTCTGTTGGTTCATCTACTGATGTAAAGCCATTGTTATCTTCTCTAGGGAAATCTTCAGTACTAACACCTACCGATGCTTCTAGTACCAATAAGTTACATAGCACAGTTAGCACTTCGTCAATGCTATCTTCATCTTCTCCTGGTTTTGTTCGTCCTTCCCGTGGAACTACTTCTGCCAGGTTTGGATCTGCCTTGAACATTGAAACTTTGGTTGCTGCTGCTGAGAAAAGAGAAATTCCTATTGAGGCTCCGGGGTCAGAGGTTCAGGACAAAATATTATTTATTATTAATAATGTTTCGGCTGCTAATGTTGAAGCTAAAGCAAAAGAGTTCACTGAAATTTTGAAAGAGCAGTACTATCCTTGGTTTGCACAGTATATGGTTATGAAAAGAGCAAGCATTGAGCCAAATTTCCATGACTTGTACTTGAAATTCCTGGATAAAGTTAATTCAAAGGCTTTGAACAAAGAGATTGTCCAGGCAACTTATGAAAATTGCAAGGTTCTCTTAGGATCAGAGCTCATAAAATCAAGTTCAGAGGAACGCTCTTTGCTTAAAAATTTGGGGAGCTGGCTTGGAAAGTTAACAATTGGCCGGAATCAGGTTTTGAGGGCTCGTGAAATAGACCCAAAGTCTTTGATTATGGAGGCATATGAGAAGGGGCTAATGATTGCTGTTATTCCATTTACGTCAAAGGTCCTTGAACCATGCCTAAACAGTCTTGCATATCAACCTCCTAATCCTTGGACTATGGGCATTTTGGGATTGCTTGCTGAGATTTATTCAATGCCAAACTTGAAAATGAACCTCAAGTTTGACATAGAGGTTTTATTCAAAAATCTGGGTGTTGATATGAAGGATGTCACACCAACCTCTCTCCTGAAGGATAGAAAAAGAGAATTTGAAGGAAATCCTGATTTCTCTAATAAAGATGTTGGGGGATCTCAATCACAAATGATTACTGATATAAAATCTGGCCTCGTACCTCCAGTAAATCAAGTGGAATTACCACTTGAAGTCACCAATCCATCCAACACGGGGGCTCATCCACATATACTCTCTCAGTATGCCGGGCCTCTTCATATTTCCTCGGGAGCATTGATGGAAGATGAAAAGGTTACACCTCTGGGATTGTCTGATTCACTTCCCTCTGCTCAAGGACTGTTACAAGCAAATCCTGGCCCAGTTCCTTTTTCTATTAGCCAGATTCCAACACAGATACCTAATATTGGGACTCACGTTATTATCAATCAAAAGCTCAGTGGTTTTGGGCTGCAAATGCATTTTCAGAGAGCTGTACCAATTGCAATGGATAGAGCTATCAAAGAGATAGTGTCTAGTATTGTGCAGCGTAGTGTTTCCATAGCAACACAAACAACCAAGGAGCTTGTTTTAAAGGACTATGCCATGGAATCTGATGAGACACGCATATTAAATGCGGCACACTTGATGGTCGCTAGTCTGGCTGGAAGTTTGGCTCATGTTACGTGCAAAGAACCATTACGGGCATCAATATCTGGCCAACTGAGGACTTCACTTCAGAACTTAAATATTGCTAATGAAATTTTGGAGCAAGCTGTGCAACTTGTCACCAATGATAATCTTGATCTAGGCTGTGCAGTCATTGAACAGGCTGCTACCGATAAGGCAATAAACACCATTGATACAGAGATTGGTCAACAACTCTCTTTGAGAAGGAAGCATCGAGAAGGTATGGGTTCTACATTTTTTGATGCAAATTTGTATCCTCAAGGTTCTATGGGTGGTGTTCCAGAGCCTCTTCGCCCCAAGCCTGGTCAGTTGTCCCTCTCACAACAACGTGTCTATGAGGACTTTGTTCGGCTTCCCTGGCAAAGCCAGTCTAGCCCGAGCTCACATTCTATGTCTTCTGGTGTTGCTGTTCAATCTGGCACTGGTCTTACTGGCACCAATGGTTCTGTATCAGGGCAGAGTAACCCTGGATACCCTGTCACCACAGGTTATGAAGGAGTATCTCGACCATTAGATGATATGACAGAATCAAATTTGGCTCCACATTTTAGTGCTTCCTCAATTAACATTAGAGCAGCTGACAGTGTTTCCCAGCATAGTTTGGAGAAAGACTCTGTTGCCTCATTTCCTTCAGCTGCTTCCACCCCTGAATTGCATGCAGTAGATTCTTCTGAAGTGAAAGAATCTGGAACTTCTTCACAGCCACTGGTTACATCAGGTGCTGTGGAGCGCCTTGGAAGTAGTTTTTTGGAGCCTTCTCTCACAACAAGAGATGCCCTAGATAAATTCCAAATTGTTGCACAAAAGTTGGAAGCTATGGTCAGCAATGATTCCAGGGATGGAGAAATACAGGGTGTCATTTCTGAGGTTCCTGAGATCATACTTAGATGTGTTAGTCGAGACGAGGCAGCTTTAGCTGTGGCTCAAAAGGTTTTCAGGGGTTTGTATGATAATGCATCAAACAACATTCATGTCACTGCTCATCTTGCTATCCTAACTGCCATTCGTGATGTTTGCAAGCTTGCTGTCAAGGAGCTTACTAGTTGGGTAATTTACTCGGAAGAAGAAAGGAAATATAACAAAGAAATTACTGTTGGCCTCATCCGTAGCGAATTGCTAAATCTTACTGAGTACAATGTTCATATGGCCAAACTTATTGATGGAGGAAGGAACAAGGCTGCAATGGAATTTTCCATTTCCCTTCTTCAAACTCTGGTTGTTGAGGAACCTAAAGTTATTTCAGAACTTCACAATCTTGTTGATGCTTTGGCAAAGCTTGCTACAAAGCCTGGATGCCCTGAGTCATTACCACAGCTTCTTGAAATGATCAAGAATCCTGGTGCTATATCCTCTAGTAATGCTGGAAAGGAGGATAAGGCAAGACAATCAAGAGACATTAAGGTGCCTGGTCTGTTACCTGCAAATAGGGAAGAGTTCAACAGCATTGATTCTATTGAACCAGATCCTGCTGGGTTCCGGGAGCAGGTTTCCATGTTGTTTACAGAATGGTATAGGATATGTGAACTTCCTGGTGCCAATGATACAGCTTTTGCCCACTTTATCTTACAATTGCATCAGAATGGACTACTTAAGGGAGATGATCTTACGGATCGCTTTTTCCGACTATTGACGGAACTAGCTGTTGCACATTGCTTATCCACTGAGATGATTAATTCAGGGTCACTGCAATCTCAACCGCAGCAGACAATGTCATTTCTTGCAATTGATATTTATGCAAAGCTTGTCTTCTCAATCTTGAAGGGATCAAACAAACTCTTTCTTCTTTCCAAGATTCTGGCAGTTACTGTCAGATTCATTATAAAAGATGCAGAGGAGAAGAAGGCCTCTTTTAATCCAAGGCCACTTTTCAGATTATTCATCAACTGGCTTCTGGATCTTGGTTCACTTGAGCCTGTTACTGATGGTGCAAACCTTCAGATTTTAACTGGTTTTGCCAATGCATTTCATGCTTTGCAGCCCCTCAAAGTTCCTGCATTCAGTTTTGCATGGCTTGAGTTGATTAGTCACAGGAGCTTCATGCCAAAAATGTTGACTGGTAATGGTCAAAAAGGTTGGCCTTATATCCAAAGGTTGCTTGTAGATCTGTTCCAATTTATGGAGCCTTTTCTGAGGCATGCTGAACTTGGAGAACCGGTTCGTGTCCTCTATAAAGGCACACTTAGGGTGCTCTTAGTGCTACTTCATGACTTCCCGGAGTTTCTCTGTGATTATCACTTTACCTTTTGTGATGTTATTCCTCCAAGTTGCATACAGATGAGGAATATCATTCTAAGTGCATTTCCGCGCAGTATGAGGCTGCCAGACCCATCTACTCCTAATTTGAAGATAGATTTGCTTCAGGAAATAACCCAATCGCCTCGCATTCTTTCTGAGGTTGATGCAGCACTTAAAGCAAAGCAGATGAAGGCTGATGTAGATGAATACCTTAAGACAAGACAACAGAGTTCGCCATTTTTATCTGAACTGAAGGATAAGATGCTTCTCTCACCCAATGAAGCAGCCTCTGCTGGGACTCGATACAATGTGCCGTTAATTAACTCCCTTGTGCTATATGTTGGAATGCAGGCAATCCATCAGCTCCAGGGACGAACTCCCCATACACAAACGTCAGCAAATGCTTTCCCCTTAGCCGTATTTTCTGTTGGTGCTGCATTGGATATTTTCCAGACACTAATTGTGGACTTGGACACTGAAGGGCGCTACCTTTTCCTAAATGCTATTGCCAACCAACTGCGTTATCCTAATACTAATACACACTACTTTTCCTTCATCCTTCTGTACTTGTTTGCAGAATCAAACCAGGAAGTTATCCAAGAACAAATTACTAGAGTCTTGTTAGAACGCCTAATTGTTAACCGTCCTCATCCCTGGGGTCTCCTCATTACTTTTATTGAGCTGATTAAGAATCCTAGGTACAATTTCTGGAACCGGAGTTTCATAAGATGTGCGCCAGAGATTGAAAAACTTTTTGAATCGGTGTCAAGATCTTGTGGAGGTCCAAAACCAGTGGATGATAGCATGGTTTCGGGTTGGGTCTGA
>Glyma.03g118400.1.p sequence-type=predicted peptide transcript=Glyma.03g118400.1 locus=Glyma.03g118400 ID=Glyma.03g118400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MPCIRSNDSKSNLLLLTQISRSLCSNFSFPMMTHYHSLPTMANTSSNHIRFLLSTLNEVNFDSVFHQLSQFTEFGTTGCILLLQTCLDHYGYVRRDMKDVQHEPILGAVIKHLLDKPNFSTVFSESMKNIEINESFLESFCNGLQLSLLEKIISSLALSDSENSDVRLCGKIFCMAQIEELCANPGYLSFHEQIHNVIMFLKQSEGLSKHVDSFMQILSLVQFKDTPPFVLTPLLPDEMHEADFLRNMELFHDSGENDFDAILADIQKEMNMGDIVKELGYGCTVDVSQCKEIFSLFLPLTENTLSKLLGAIACTHIGLEDNQNTYLTFRAAHGYNVPELPPLNSWNIDVLIDTLKHLAPHTNWVRVIENLDHEGFFLPSEEAFSFLMSVYKHACKEPFPLHAICGPVWKNTEGQLSFLKYAVSAPPEIFTFAHSGRQLAYVDAINGHKLQNGHANHAWLCLDLLDVLCQLAEKGHASIVRSIFDYPLKHCPEVLLLGLAHINTAYNLLQQEVSLIVFLMIVKSGVGSGMILHLWHVNPNLVLRGFVDSQNNDADSIVRIVDICQELKILSSVVEIMPSYYSIRLAAVASRKEFLDLEKWLSSNLTTYKEAFFEECLKFLKDSHFGGSQNLSGKSFHQSGAILSLYAEAAATILKVLKSHTDLVASRQLSEELERLHVSIIDTNPRLQNGGTADSSTSDGYADDIEAEANSYFHQMFSDQLTINAMVQMLARFKESSVKREKSIFECMIANLFEEYRFFPKYPERQLKIAAVLFGSVIKHQLVTHLSLGIALRYVLDALRKPADSKMFLFGSLALEQFVDRLIEWPQYCNHILQISHLRSTHSEIVSFIEQALARISSGHLDVDGASHASVISNHHSAQATIGHVELSGSSVIQPGQQHLSLQLQQRRENPLDDRHKASVGSSTDVKPLLSSLGKSSVLTPTDASSTNKLHSTVSTSSMLSSSSPGFVRPSRGTTSARFGSALNIETLVAAAEKREIPIEAPGSEVQDKILFIINNVSAANVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIMEAYEKGLMIAVIPFTSKVLEPCLNSLAYQPPNPWTMGILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDVTPTSLLKDRKREFEGNPDFSNKDVGGSQSQMITDIKSGLVPPVNQVELPLEVTNPSNTGAHPHILSQYAGPLHISSGALMEDEKVTPLGLSDSLPSAQGLLQANPGPVPFSISQIPTQIPNIGTHVIINQKLSGFGLQMHFQRAVPIAMDRAIKEIVSSIVQRSVSIATQTTKELVLKDYAMESDETRILNAAHLMVASLAGSLAHVTCKEPLRASISGQLRTSLQNLNIANEILEQAVQLVTNDNLDLGCAVIEQAATDKAINTIDTEIGQQLSLRRKHREGMGSTFFDANLYPQGSMGGVPEPLRPKPGQLSLSQQRVYEDFVRLPWQSQSSPSSHSMSSGVAVQSGTGLTGTNGSVSGQSNPGYPVTTGYEGVSRPLDDMTESNLAPHFSASSINIRAADSVSQHSLEKDSVASFPSAASTPELHAVDSSEVKESGTSSQPLVTSGAVERLGSSFLEPSLTTRDALDKFQIVAQKLEAMVSNDSRDGEIQGVISEVPEIILRCVSRDEAALAVAQKVFRGLYDNASNNIHVTAHLAILTAIRDVCKLAVKELTSWVIYSEEERKYNKEITVGLIRSELLNLTEYNVHMAKLIDGGRNKAAMEFSISLLQTLVVEEPKVISELHNLVDALAKLATKPGCPESLPQLLEMIKNPGAISSSNAGKEDKARQSRDIKVPGLLPANREEFNSIDSIEPDPAGFREQVSMLFTEWYRICELPGANDTAFAHFILQLHQNGLLKGDDLTDRFFRLLTELAVAHCLSTEMINSGSLQSQPQQTMSFLAIDIYAKLVFSILKGSNKLFLLSKILAVTVRFIIKDAEEKKASFNPRPLFRLFINWLLDLGSLEPVTDGANLQILTGFANAFHALQPLKVPAFSFAWLELISHRSFMPKMLTGNGQKGWPYIQRLLVDLFQFMEPFLRHAELGEPVRVLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRSMRLPDPSTPNLKIDLLQEITQSPRILSEVDAALKAKQMKADVDEYLKTRQQSSPFLSELKDKMLLSPNEAASAGTRYNVPLINSLVLYVGMQAIHQLQGRTPHTQTSANAFPLAVFSVGAALDIFQTLIVDLDTEGRYLFLNAIANQLRYPNTNTHYFSFILLYLFAESNQEVIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVSRSCGGPKPVDDSMVSGWV*
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