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Report for Sequence Feature Glyma.03G109000

Feature Type:gene_model
Chromosome:Gm03
Start:30950848
stop:30961071
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03G109000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G13490.1AT Lysyl-tRNA synthetase, class II JGI N/AIEA
GO:0006418GO-bp tRNA aminoacylation for protein translation EnsemblGenomesN/AIEA
GO:0006418GO-bp tRNA aminoacylation for protein translation JGI N/AIEA
GO:0006430GO-bp lysyl-tRNA aminoacylation EnsemblGenomesN/AIEA
GO:0048481GO-bp plant ovule development EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding JGI N/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0004812GO-mf aminoacyl-tRNA ligase activity EnsemblGenomesN/AIEA
GO:0004812GO-mf aminoacyl-tRNA ligase activity JGI N/AIEA
GO:0004824GO-mf lysine-tRNA ligase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
KOG1885 KOG Lysyl-tRNA synthetase (class II) JGI N/AIEA
PTHR22594Panther ASPARTYL/LYSYL-TRNA SYNTHETASE JGI N/AIEA
PTHR22594:SF4Panther LYSINE--TRNA LIGASE JGI N/AIEA
PF00152PFAM tRNA synthetases class II (D, K and N) JGI N/AIEA
PF01336PFAM OB-fold nucleic acid binding domain JGI N/AIEA

Expression Patterns of Glyma.03G109000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.03G109000 not represented in the dataset
Glyma.03G109000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.03G109000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g109000 Wm82.a4.v1ISS As supplied by JGI
Glyma03g25750 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.03G109000
>Glyma.03g109000.2 sequence-type=transcript locus=Glyma.03g109000 ID=Glyma.03g109000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AACTGTAATGTCGTGCGTGCTACCCCAAACCAAACAGATAAATAAACAGATATCACGCCCCACTGGTGAAATAGAGAATGGAAGCGCTAAAACTGTGCAATCTAACATGGAGCCCGTTGAAGCACTTCTTTCACTCTCACGCATTTCGTCGAACACCTCCCGTGCTCGTTCTTCGCGCGTGCTCTTCTTccaccgccgccgccgacaccagggccgccggtcgcggacgccgGAGCTCGGAGTCGTCGTCCACCACTTCGACTTCCGATAGGGACGCCATTCGAGCCATTCGCTTGAAGAAGGTTGAAGAATTGAGAAGCAAGGGGCTTGATCCGTATGCTTATGAATGGAACAAAACTCACGGTGCTAATCAACTGCAAGATATATACAGAGATCTAGGAAATGGTGAGGAAAAAAATAGTGAGAATGACCATGTATCTGTCGCGGGAAGAATTGTTGCTAGGAGGGCATTTGGAAAGCTTGCCTTTCTGACTCTAAGAGATGATTCAGGGACGATTCAGCTCTATTGTGATAAGGAGAGACTCATAGGTGATCAGTTTGAACAGTTAAAGGCCCATGTTGATATTGGTGATATATTAGGTGTAAGAGGAACAATAAAACGAACTGAAAAAGGAGAACTTTCTGTGTCTGTTCTATCTTTTGCAATCCTTACAAAATCTCTGCTTCCACTGCCTGACAAATATCATGGACTAACTGATATAGATAAACGTTATCGTCAGAGGTATGTAGATATGATCGCAAATCCAGAGGTAGCGGATGTATTCCGTAGAAGAGCAAAGGTTGTATCAGAGATACGGAGGACAATGGATTCTTTAGGTTTTGTTGAAGTTGAAACTCCAGTTTTGCAGGGAGCAGCTGGGGGAGCAGAAGCCAGACCATTTATTACATACCATAATTCTCTTGGAAGAGACTTATATCTGAGAATTGCAACTGAATTACATCTTAAGAGAATGCTGGTGGGTGGTTTTGAAAAAGTATACGAGATTGGTCGAATATTTAGAAATGAAGGAATTTCAACTCGACATAATCCTGAATTTACAACTATAGAGATGTACGAAGCATACTCGGATTATCAAAGCATGATGAATTTAGCAGAGGAGATCGTTACTCGATGTGCTCTTGCAGTTCATGGGAAGCTTACCATTGATTATCAGGGAGTCGAGATATGTCTGGAAAAGCCCTGGAGGAGGGAGACTATGCACAATCTTGTTAAAGAAACTGCTGGGATTGATTTCAATGAATTGGCAAATGATCTTGAGGTTGCAAAGCGAGTTACTCTGGATACCCTTGGAAAGAATCTTGATAACAAGGATAAAGGTTCCATTGAAGCATGCCAATCCGTTGGTCACCTCCTTAATGAGGTTTTTGAGAGTTTTGTAGAACCAAAGCTCATCCAACCTACATTTGTTTTAGACTATCCAATTGAGATATCTCCACTGGCCAAACCACACAGAAGGTTTGACTGAGAGATTTGAACTCTTCATTTGTGGTCGTGAGTTGGGCAATGCATTCTCTGAATTGACTGATCCTATAGATCAGAGAGGACGCTTAGAAGATCAAATTAGGCAGCATGAAAAGAAGAGAGCAGCTGTTTCAACAAATGACGATAAAAAGGAAGGAACGgaagatgatgatgattcatatgaagtgactcttgatgatgaCTTTCTCACAGCTTTGGAATACGGAATGCCTCCAGCTTCTGGAATGGGACTTGGAATTGATAGGCTGGTGATGCTTTTGACAAATTCTCCCAGCATTCGAGATGTTATTCCCTTCCCAGTACTCAAGGTCCAGCAATAGTGATAGGTTTGGAGATCACTGTGCCGTCCATCATCACTATTTGCTCTTTTCTAAATGTCTTAATTATATTTGAGTTCATTTGTACAACATGTATCATGATAAGGTTATTTTTTATTCCCTCCTCAAATTATCTATTTGGGAGTTTTGATTTGTGGAAAAATGTCACTTTAGAATATCAATAAAGGATTAATTGTTCTTCAACAATA
Coding sequences of Glyma.03G109000
>Glyma.03g109000.1 sequence-type=CDS polypeptide=Glyma.03g109000.1.p locus=Glyma.03g109000 ID=Glyma.03g109000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGCGCTAAAACTGTGCAATCTAACATGGAGCCCGTTGAAGCACTTCTTTCACTCTCACGCATTTCGTCGAACACCTCCCGTGCTCGTTCTTCGCGCGTGCTCTTCTTCCACCGCCGCCGCCGACACCAGGGCCGCCGGTCGCGGACGCCGGAGCTCGGAGTCGTCGTCCACCACTTCGACTTCCGATAGGGACGCCATTCGAGCCATTCGCTTGAAGAAGGTTGAAGAATTGAGAAGCAAGGGGCTTGATCCGTATGCTTATGAATGGAACAAAACTCACGGTGCTAATCAACTGCAAGATATATACAGAGATCTAGGAAATGGTGAGGAAAAAAATAGTGAGAATGACCATGTATCTGTCGCGGGAAGAATTGTTGCTAGGAGGGCATTTGGAAAGCTTGCCTTTCTGACTCTAAGAGATGATTCAGGGACGATTCAGCTCTATTGTGATAAGGAGAGACTCATAGGTGATCAGTTTGAACAGTTAAAGGCCCATGTTGATATTGGTGATATATTAGGTGTAAGAGGAACAATAAAACGAACTGAAAAAGGAGAACTTTCTGTGTCTGTTCTATCTTTTGCAATCCTTACAAAATCTCTGCTTCCACTGCCTGACAAATATCATGGACTAACTGATATAGATAAACGTTATCGTCAGAGGTATGTAGATATGATCGCAAATCCAGAGGTAGCGGATGTATTCCGTAGAAGAGCAAAGGTTGTATCAGAGATACGGAGGACAATGGATTCTTTAGGTTTTGTTGAAGTTGAAACTCCAGTTTTGCAGGGAGCAGCTGGGGGAGCAGAAGCCAGACCATTTATTACATACCATAATTCTCTTGGAAGAGACTTATATCTGAGAATTGCAACTGAATTACATCTTAAGAGAATGCTGGTGGGTGGTTTTGAAAAAGTATACGAGATTGGTCGAATATTTAGAAATGAAGGAATTTCAACTCGACATAATCCTGAATTTACAACTATAGAGATGTACGAAGCATACTCGGATTATCAAAGCATGATGAATTTAGCAGAGGAGATCGTTACTCGATGTGCTCTTGCAGTTCATGGGAAGCTTACCATTGATTATCAGGGAGTCGAGATATGTCTGGAAAAGCCCTGGAGGAGGGAGACTATGCACAATCTTGTTAAAGAAACTGCTGGGATTGATTTCAATGAATTGGCAAATGATCTTGAGGTTGCAAAGCGAGTTACTCTGGATACCCTTGGAAAGAATCTTGATAACAAGGATAAAGGTTCCATTGAAGCATGCCAATCCGTTGGTCACCTCCTTAATGAGGTTTTTGAGAGTTTTGTAGAACCAAAGCTCATCCAACCTACATTTGTTTTAGACTATCCAATTGAGATATCTCCACTGGCCAAACCACACAGAAGATCCACAGGTTTGACTGAGAGATTTGAACTCTTCATTTGTGGTCGTGAGTTGGGCAATGCATTCTCTGAATTGACTGATCCTATAGATCAGAGAGGACGCTTAGAAGATCAAATTAGGCAGCATGAAAAGAAGAGAGCAGCTGTTTCAACAAATGACGATAAAAAGGAAGGAACGGAAGATGATGATGATTCATATGAAGTGACTCTTGATGATGACTTTCTCACAGCTTTGGAATACGGAATGCCTCCAGCTTCTGGAATGGGACTTGGAATTGATAGGCTGGTGATGCTTTTGACAAATTCTCCCAGCATTCGAGATGTTATTCCCTTCCCAGTACTCAAGGTCCAGCAATAG

>Glyma.03g109000.2 sequence-type=CDS polypeptide=Glyma.03g109000.2.p locus=Glyma.03g109000 ID=Glyma.03g109000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGCGCTAAAACTGTGCAATCTAACATGGAGCCCGTTGAAGCACTTCTTTCACTCTCACGCATTTCGTCGAACACCTCCCGTGCTCGTTCTTCGCGCGTGCTCTTCTTCCACCGCCGCCGCCGACACCAGGGCCGCCGGTCGCGGACGCCGGAGCTCGGAGTCGTCGTCCACCACTTCGACTTCCGATAGGGACGCCATTCGAGCCATTCGCTTGAAGAAGGTTGAAGAATTGAGAAGCAAGGGGCTTGATCCGTATGCTTATGAATGGAACAAAACTCACGGTGCTAATCAACTGCAAGATATATACAGAGATCTAGGAAATGGTGAGGAAAAAAATAGTGAGAATGACCATGTATCTGTCGCGGGAAGAATTGTTGCTAGGAGGGCATTTGGAAAGCTTGCCTTTCTGACTCTAAGAGATGATTCAGGGACGATTCAGCTCTATTGTGATAAGGAGAGACTCATAGGTGATCAGTTTGAACAGTTAAAGGCCCATGTTGATATTGGTGATATATTAGGTGTAAGAGGAACAATAAAACGAACTGAAAAAGGAGAACTTTCTGTGTCTGTTCTATCTTTTGCAATCCTTACAAAATCTCTGCTTCCACTGCCTGACAAATATCATGGACTAACTGATATAGATAAACGTTATCGTCAGAGGTATGTAGATATGATCGCAAATCCAGAGGTAGCGGATGTATTCCGTAGAAGAGCAAAGGTTGTATCAGAGATACGGAGGACAATGGATTCTTTAGGTTTTGTTGAAGTTGAAACTCCAGTTTTGCAGGGAGCAGCTGGGGGAGCAGAAGCCAGACCATTTATTACATACCATAATTCTCTTGGAAGAGACTTATATCTGAGAATTGCAACTGAATTACATCTTAAGAGAATGCTGGTGGGTGGTTTTGAAAAAGTATACGAGATTGGTCGAATATTTAGAAATGAAGGAATTTCAACTCGACATAATCCTGAATTTACAACTATAGAGATGTACGAAGCATACTCGGATTATCAAAGCATGATGAATTTAGCAGAGGAGATCGTTACTCGATGTGCTCTTGCAGTTCATGGGAAGCTTACCATTGATTATCAGGGAGTCGAGATATGTCTGGAAAAGCCCTGGAGGAGGGAGACTATGCACAATCTTGTTAAAGAAACTGCTGGGATTGATTTCAATGAATTGGCAAATGATCTTGAGGTTGCAAAGCGAGTTACTCTGGATACCCTTGGAAAGAATCTTGATAACAAGGATAAAGGTTCCATTGAAGCATGCCAATCCGTTGGTCACCTCCTTAATGAGGTTTTTGAGAGTTTTGTAGAACCAAAGCTCATCCAACCTACATTTGTTTTAGACTATCCAATTGAGATATCTCCACTGGCCAAACCACACAGAAGGTTTGACTGA
Predicted protein sequences of Glyma.03G109000
>Glyma.03g109000.1.p sequence-type=predicted peptide transcript=Glyma.03g109000.1 locus=Glyma.03g109000 ID=Glyma.03g109000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEALKLCNLTWSPLKHFFHSHAFRRTPPVLVLRACSSSTAAADTRAAGRGRRSSESSSTTSTSDRDAIRAIRLKKVEELRSKGLDPYAYEWNKTHGANQLQDIYRDLGNGEEKNSENDHVSVAGRIVARRAFGKLAFLTLRDDSGTIQLYCDKERLIGDQFEQLKAHVDIGDILGVRGTIKRTEKGELSVSVLSFAILTKSLLPLPDKYHGLTDIDKRYRQRYVDMIANPEVADVFRRRAKVVSEIRRTMDSLGFVEVETPVLQGAAGGAEARPFITYHNSLGRDLYLRIATELHLKRMLVGGFEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYQSMMNLAEEIVTRCALAVHGKLTIDYQGVEICLEKPWRRETMHNLVKETAGIDFNELANDLEVAKRVTLDTLGKNLDNKDKGSIEACQSVGHLLNEVFESFVEPKLIQPTFVLDYPIEISPLAKPHRRSTGLTERFELFICGRELGNAFSELTDPIDQRGRLEDQIRQHEKKRAAVSTNDDKKEGTEDDDDSYEVTLDDDFLTALEYGMPPASGMGLGIDRLVMLLTNSPSIRDVIPFPVLKVQQ*

>Glyma.03g109000.2.p sequence-type=predicted peptide transcript=Glyma.03g109000.2 locus=Glyma.03g109000 ID=Glyma.03g109000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEALKLCNLTWSPLKHFFHSHAFRRTPPVLVLRACSSSTAAADTRAAGRGRRSSESSSTTSTSDRDAIRAIRLKKVEELRSKGLDPYAYEWNKTHGANQLQDIYRDLGNGEEKNSENDHVSVAGRIVARRAFGKLAFLTLRDDSGTIQLYCDKERLIGDQFEQLKAHVDIGDILGVRGTIKRTEKGELSVSVLSFAILTKSLLPLPDKYHGLTDIDKRYRQRYVDMIANPEVADVFRRRAKVVSEIRRTMDSLGFVEVETPVLQGAAGGAEARPFITYHNSLGRDLYLRIATELHLKRMLVGGFEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYQSMMNLAEEIVTRCALAVHGKLTIDYQGVEICLEKPWRRETMHNLVKETAGIDFNELANDLEVAKRVTLDTLGKNLDNKDKGSIEACQSVGHLLNEVFESFVEPKLIQPTFVLDYPIEISPLAKPHRRFD*






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