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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G08870.1 | AT | Arginase/deacetylase superfamily protein | JGI | N/A | IEA |
| GO:0000050 | GO-bp | urea cycle | EnsemblGenomes | N/A | IEA |
| GO:0006525 | GO-bp | arginine metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0004053 | GO-mf | arginase activity | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0016813 | GO-mf | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines | JGI | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | JGI | N/A | IEA |
| KOG2964 | KOG | Arginase family protein | JGI | N/A | IEA |
| PTHR11358 | Panther | ARGINASE/AGMATINASE | JGI | N/A | IEA |
| PTHR11358:SF4 | Panther | JGI | N/A | IEA | |
| PF00491 | PFAM | Arginase family | JGI | N/A | IEA |
| ARG-PRO-PWY | SoyCyc9 | L-arginine degradation VI (arginase 2 pathway) | Plant Metabolic Network | ISS | |
| ARGASEDEG-PWY | SoyCyc9 | L-arginine degradation I (arginase pathway) | Plant Metabolic Network | ISS | |
| PWY-4984 | SoyCyc9 | urea cycle | Plant Metabolic Network | ISS | |
| PWY-6305 | SoyCyc9 | putrescine biosynthesis IV | Plant Metabolic Network | ISS | |
| PWY-6922 | SoyCyc9 | L-Nδ-acetylornithine biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-48245 | SoyCyc9-rxn | arginase | Plant Metabolic Network | ISS |
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Glyma.03G028000 not represented in the dataset |
Glyma.03G028000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.01g140200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g028000 | Wm82.a4.v1 | ISS | As supplied by JGI |
| Glyma03g03270 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.03g028000.1 sequence-type=CDS polypeptide=Glyma.03g028000.1.p locus=Glyma.03g028000 ID=Glyma.03g028000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAGTTTCCTTCGTTCTTTTGCAAGAAACAAGGATATATCAAAAGTAGGACGCAGAGGTATCCATTGCATGCAGAAACTATGTGCAGAAAAAATATCTCCTGATTCACTAGAGAAGGCCCAAAATCGTGTGATAGATGCTGCACTCACACTTGTTCGAGAAAATACAAGGCTTAAGAAAGAACTTGTGCATAGTTTGGGAGGTGCTGTAGCAACTTCAACTCTTCTTGGAGTTCCTTTGGGTCATAATTCATCGTTTCTTGAAGGGCCTGCATTTGCACCTCCTTTCATTAGGGAAGGTATTTGGTGTGGTAGCGCAAACTCCACAACTGAAGAAGGAAAGGATTTAAAGGACTTGCGAATAATGGTTGATGTTGGTGATATCCCTATTCAAGAAATGCGAGATTGTGGGATAGGAGATGAGAGACTCATGAAAGTTGTTAGTGATTCTGTCAAACTAGTGATGGAAGAGGATCCATTACGTCCCTTAATTTTGGCTGGTGATCACTCAATCTCATATCCAGTTGTCAGAGCCATATCTGAGAAGCTTGGGGGACCAGTTGATGTTCTTCATTTTGATGCACATCCTGATCTCTATGATGAATTTGAAGGAAATTATTATTCGCACGCTTCTTCTTTTGCTCGAATCATGGAGGGTGGTTATGCTCGTCGACTCTTGCAGGTCGGTATAAGATCAATAAACAAAGAAGGGCGTGAACAAGCCAAAAAGTTCGGGGTAGAGCAGTTTGAAATGCGACATTTTTCGAAAGATCGTCCATTTTTGGAAAACCTGAATCTAGGAGAAGGTGCTAAAGGAGTATACATTTCAATCGATGTGGATTGTCTTGATCCAGGGTATGCTGTAGGAGTGTCCCACTATGAATCAGGAGGTCTTTCTTTCAGGGATGTTATGAACATGCTGCAAAATCTCAAAGGTGACATTGTTGGTGGAGACGTGGTTGAATACAACCCACAACGTGACACTCCTGATCGTATGACTGCCATGGTAGCTGCTAAGTTTGTGAGAGAACTCGCTGCAAAGATGTCAAAATGA
>Glyma.03g028000.1.p sequence-type=predicted peptide transcript=Glyma.03g028000.1 locus=Glyma.03g028000 ID=Glyma.03g028000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSFLRSFARNKDISKVGRRGIHCMQKLCAEKISPDSLEKAQNRVIDAALTLVRENTRLKKELVHSLGGAVATSTLLGVPLGHNSSFLEGPAFAPPFIREGIWCGSANSTTEEGKDLKDLRIMVDVGDIPIQEMRDCGIGDERLMKVVSDSVKLVMEEDPLRPLILAGDHSISYPVVRAISEKLGGPVDVLHFDAHPDLYDEFEGNYYSHASSFARIMEGGYARRLLQVGIRSINKEGREQAKKFGVEQFEMRHFSKDRPFLENLNLGEGAKGVYISIDVDCLDPGYAVGVSHYESGGLSFRDVMNMLQNLKGDIVGGDVVEYNPQRDTPDRMTAMVAAKFVRELAAKMSK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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