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Report for Sequence Feature Glyma.03G027900

Feature Type:gene_model
Chromosome:Gm03
Start:3048805
stop:3061575
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03G027900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G45270.1AT glycoprotease 1 JGI N/AIEA
GO:0002949GO-bp tRNA threonylcarbamoyladenosine modification EnsemblGenomesN/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0008033GO-bp tRNA processing EnsemblGenomesN/AIEA
GO:0009793GO-bp embryo development ending in seed dormancy EnsemblGenomesN/AIEA
GO:0000408GO-cc EKC/KEOPS complex EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0005743GO-cc mitochondrial inner membrane EnsemblGenomesN/AIEA
GO:0004222GO-mf metalloendopeptidase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016746GO-mf transferase activity, transferring acyl groups EnsemblGenomesN/AIEA
GO:0016747GO-mf transferase activity, transferring acyl groups other than amino-acyl groups EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0061711GO-mf N(6)-L-threonylcarbamoyladenine synthase activity EnsemblGenomesN/AIEA
KOG2707 KOG Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) JGI N/AIEA
PTHR11735Panther O-SIALOGLYCOPROTEIN ENDOPEPTIDASE JGI N/AIEA
PTHR11735:SF6Panther TRNA THREONYLCARBAMOYLADENOSINE BIOSYNTHESIS PROTEIN OSGEP-RELATED JGI N/AIEA
PF00814PFAM Glycoprotease family JGI N/AIEA
GN7V-50531SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.03G027900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.03G027900 not represented in the dataset
Glyma.03G027900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03G027900
ParalogEvidenceComments
Glyma.01g140000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03G027900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g027900 Wm82.a4.v1ISS As supplied by JGI
Glyma03g03250 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.03G027900
>Glyma.03g027900.2 sequence-type=transcript locus=Glyma.03g027900 ID=Glyma.03g027900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTGGTAAAAAGATCGTCCCTTTCCGTAGAAAAACGTTGTCTGCACTCTCCAGTGCTTCATCTTCTCTGACAATGGTACTTTCTCTCTCTACATTAGGGTTTTCTTCAGCACTTTCGCGCCTAAACTTCTTCCCAAAGCCACCACCTTCTCTTTTCTCCGCACTCACCACTTTCCGCAGAAACCAACTTCCACTCAAATCGTCGCTCGCCGCATCGAAACGTGACGGCGATGTTGTCGTTTTGGGCATCGAAACCAGCTGCGACGATACCGCCGCTGCTGTCGTGAGAAGTGACGGTGAAATTCTCAGCCAAGTAGTGTCTTCTCAGACCTGCTTGCGAAATATGGAGGTGTTGCTCCAAAAATGGCAGAAGAAGCTCACTCAAAAGTTATAGACCAGGTTGTGCAAGAAGCCCTTGATAAAGCTTATCTGACCGAGAAGGATCTTACTGCTGTTGCTGTTACTATTGGTCCTGGTTTGAGTCTCTGCCTTCGTGTGGGGGTGCAGAAAGCCCGGAAAATTGCTGGCGGATTTAATTTACCAATTATTGGCATACATCACATGGAAGCTCATGCTCTGGTTGCCAGGTTAATTGAGAAAGATTTGCAGTTTCCATTCATGGCCCTACTTATTTCAGGGGGACACAATTTACTCGTTCTTGCTCGTGATCTTGGGCAGTACATACAACTTGGAACTACGATAGATGATGCTATCGGTGAGGCATATGACAAGACAGCAAAATGGCTCGGACTGGATTTGAGGAGAAGTGGTGGTCCTGCTATTGAGAAGCTTGCTATGGAGGGTAATGCTGAATCAGTCAAGTTTTCTATTCCAATGAAGCAGCACAAAGACTGCAATTTTTCCTATGCTGGTCTAAAAACCCAAGTACGTCTGGCAATTGAGTCCAAAAAGATTGATGCCAAAATTCCAATTTCTTCAGCAAGTAATGGAGATCGACTGTCACGGGCTGATATTGCTGCTTCTTTTCAGCGAATTGCTGTGTTACATCTTGAGGAGAGGTGTGAACGAGCAATACAGTGGGCATTGAAGATGGAGCCTTCCATAAGACACTTGGTTGTCTCTGGTGGAGTTGCATCAAATCAATATGTCCGAGCCCGGCTTGATATGGTTGTGAAGAAGAATGGCCTGCAACTTGTATGCCCACCTCCTCGGCTCTGTACTGATAATGGTGTAATGATTGCTTGGACTGGTATTGAGCACTTCCGCATGGGAAGATATGACCCTCCTCCTCCTGCAGAAGAACCTGAAGACTTTGTGTATGATATACGCCCAAGGTGGCCGCTGGGGGAAGAATATGCTGAAGGAAAAAGTGTAGCACGTTCGTTAAGAACAGCCCGCATTCATCCTTCTCTTACATCTATAATTCAAGCATCATTGCAACAATGACACTGCTTGAACTTCCATGTTGCTTCAGCCTCTCATGAAGATTTGCAGGGCAAGCCTCTCTCTTTTGGACTTATCTATGATTTGCCAAAATGACGTCTGGGCTGAATTTTCAAAAATACATGAAAAAGTGGGCTGAAGTTTGCTGTGGAAACTGACCATTGGCATCAAGCAGTAGCACGAGAAAATCCAGCAAAGCAATGTCACGGCAAGGAGAAACATTATAATGGTATGGTGGTTGGTAGAAGTGAAAAAAGGAGTGGGATGGGAAGAGATCAAAATTCATTGTGCTATTAACAAAAAATTTCAACTTAAGAGTAAAAGAAAAGAAAAGGCTAGGAAATTTTGTATTTATGTATTATTATTGACATATTTtgtcaatggaattgattaacaaaatattagttattaattggcacaaattgtaaaatatttgttattattggcacaaatttgatggccatttaaaataatagatcttacatgattaaacaactg

>Glyma.03g027900.3 sequence-type=transcript locus=Glyma.03g027900 ID=Glyma.03g027900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTGGTAAAAAGATCGTCCCTTTCCGTAGAAAAACGTTGTCTGCACTCTCCAGTGCTTCATCTTCTCTGACAATGGTACTTTCTCTCTCTACATTAGGGTTTTCTTCAGCACTTTCGCGCCTAAACTTCTTCCCAAAGCCACCACCTTCTCTTTTCTCCGCACTCACCACTTTCCGCAGAAACCAACTTCCACTCAAATCGTCGCTCGCCGCATCGAAACGTGACGGCGATGTTGTCGTTTTGGGCATCGAAACCAGCTGCGACGATACCGCCGCTGCTGTCGTGAGAAGTGACGGTGAAATTCTCAGCCAAGTAGTGTCTTCTCAGGCAGACCTGCTTGCGAAATATGGAGGTGTTGCTCCAAAAATGGCAGAAGAAGCTCACTCAAAAGTTATAGACCAGGTTGTGCAAGAAGCCCTTGATAAAGCTTATCTGACCGAGAAGGATCTTACTGCTGTTGCTGTTACTATTGGTCCTGGTTTGAGTCTCTGCCTTCGTGTGGGGGTGCAGAAAGCCCGGAAAATTGCTGGCGGATTTAATTTACCAATTATTGGCATACATCACATGGAAGCTCATGCTCTGGTTGCCAGGTTAATTGAGAAAGATTTGCAGTTTCCATTCATGGCCCTACTTATTTCAGGGGGACACAATTTACTCGTTCTTGCTCGTGATCTTGGGCAGTACATACAACTTGGAACTACGATAGATGATGCTATCGGTGAGGCATATGACAAGACAGCAAAATGGCTCGGACTGGATTTGAGGAGAAGTGGTGGTCCTGCTATTGAGAAGCTTGCTATGGAGGGTAATGCTGAATCAGTCAAGTTTTCTATTCCAATGAAGCAGCACAAAGACTGCAATTTTTCCTATGCTGGTCTAAAAACCCAAGTACGTCTGGCAATTGAGTCCAAAAAGATTGATGCCAAAATTCCAATTTCTTCAGCAAGTAATGGAGATCGACTGTCACGGGCTGATATTGCTGCTTCTTTTCAGCGAATTGCTGTGTTACATCTTGAGGAGAGGTGTGAACGAGCAATACAGTGGGCATTGAAGATGGAGCCTTCCATAAGACACTTGGTTGTCTCTGGTGGAGTTGCATCAAATCAATATGTCCGAGCCCGGCTTGATATGGTTGTGAAGAAGAATGGCCTGCAACTTGTATGCCCACCTCCTCGGCTCTGTACTGATAATGTTGTAataggcttccaaccagggccaaccttctcaggagaaatattcacatccaggacaccctatgccctctttgtgaatctcatcaggaggaggctgggcatttgtttttccactgcaagatgacaagaggaatgtggggggaatccatgaaatggatccgggctattggtgctctctcagctgatccggccagtcattttatccaattctgtaatggttttggtgcagggagtaggtacagcagg
Coding sequences of Glyma.03G027900
>Glyma.03g027900.1 sequence-type=CDS polypeptide=Glyma.03g027900.1.p locus=Glyma.03g027900 ID=Glyma.03g027900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTACTTTCTCTCTCTACATTAGGGTTTTCTTCAGCACTTTCGCGCCTAAACTTCTTCCCAAAGCCACCACCTTCTCTTTTCTCCGCACTCACCACTTTCCGCAGAAACCAACTTCCACTCAAATCGTCGCTCGCCGCATCGAAACGTGACGGCGATGTTGTCGTTTTGGGCATCGAAACCAGCTGCGACGATACCGCCGCTGCTGTCGTGAGAAGTGACGGTGAAATTCTCAGCCAAGTAGTGTCTTCTCAGGCAGACCTGCTTGCGAAATATGGAGGTGTTGCTCCAAAAATGGCAGAAGAAGCTCACTCAAAAGTTATAGACCAGGTTGTGCAAGAAGCCCTTGATAAAGCTTATCTGACCGAGAAGGATCTTACTGCTGTTGCTGTTACTATTGGTCCTGGTTTGAGTCTCTGCCTTCGTGTGGGGGTGCAGAAAGCCCGGAAAATTGCTGGCGGATTTAATTTACCAATTATTGGCATACATCACATGGAAGCTCATGCTCTGGTTGCCAGGTTAATTGAGAAAGATTTGCAGTTTCCATTCATGGCCCTACTTATTTCAGGGGGACACAATTTACTCGTTCTTGCTCGTGATCTTGGGCAGTACATACAACTTGGAACTACGATAGATGATGCTATCGGTGAGGCATATGACAAGACAGCAAAATGGCTCGGACTGGATTTGAGGAGAAGTGGTGGTCCTGCTATTGAGAAGCTTGCTATGGAGGGTAATGCTGAATCAGTCAAGTTTTCTATTCCAATGAAGCAGCACAAAGACTGCAATTTTTCCTATGCTGGTCTAAAAACCCAAGTACGTCTGGCAATTGAGTCCAAAAAGATTGATGCCAAAATTCCAATTTCTTCAGCAAGTAATGGAGATCGACTGTCACGGGCTGATATTGCTGCTTCTTTTCAGCGAATTGCTGTGTTACATCTTGAGGAGAGGTGTGAACGAGCAATACAGTGGGCATTGAAGATGGAGCCTTCCATAAGACACTTGGTTGTCTCTGGTGGAGTTGCATCAAATCAATATGTCCGAGCCCGGCTTGATATGGTTGTGAAGAAGAATGGCCTGCAACTTGTATGCCCACCTCCTCGGCTCTGTACTGATAATGGTGTAATGATTGCTTGGACTGGTATTGAGCACTTCCGCATGGGAAGATATGACCCTCCTCCTCCTGCAGAAGAACCTGAAGACTTTGTGTATGATATACGCCCAAGGTGGCCGCTGGGGGAAGAATATGCTGAAGGAAAAAGTGTAGCACGTTCGTTAAGAACAGCCCGCATTCATCCTTCTCTTACATCTATAATTCAAGCATCATTGCAACAATGA

>Glyma.03g027900.2 sequence-type=CDS polypeptide=Glyma.03g027900.2.p locus=Glyma.03g027900 ID=Glyma.03g027900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGAAGAAGCTCACTCAAAAGTTATAGACCAGGTTGTGCAAGAAGCCCTTGATAAAGCTTATCTGACCGAGAAGGATCTTACTGCTGTTGCTGTTACTATTGGTCCTGGTTTGAGTCTCTGCCTTCGTGTGGGGGTGCAGAAAGCCCGGAAAATTGCTGGCGGATTTAATTTACCAATTATTGGCATACATCACATGGAAGCTCATGCTCTGGTTGCCAGGTTAATTGAGAAAGATTTGCAGTTTCCATTCATGGCCCTACTTATTTCAGGGGGACACAATTTACTCGTTCTTGCTCGTGATCTTGGGCAGTACATACAACTTGGAACTACGATAGATGATGCTATCGGTGAGGCATATGACAAGACAGCAAAATGGCTCGGACTGGATTTGAGGAGAAGTGGTGGTCCTGCTATTGAGAAGCTTGCTATGGAGGGTAATGCTGAATCAGTCAAGTTTTCTATTCCAATGAAGCAGCACAAAGACTGCAATTTTTCCTATGCTGGTCTAAAAACCCAAGTACGTCTGGCAATTGAGTCCAAAAAGATTGATGCCAAAATTCCAATTTCTTCAGCAAGTAATGGAGATCGACTGTCACGGGCTGATATTGCTGCTTCTTTTCAGCGAATTGCTGTGTTACATCTTGAGGAGAGGTGTGAACGAGCAATACAGTGGGCATTGAAGATGGAGCCTTCCATAAGACACTTGGTTGTCTCTGGTGGAGTTGCATCAAATCAATATGTCCGAGCCCGGCTTGATATGGTTGTGAAGAAGAATGGCCTGCAACTTGTATGCCCACCTCCTCGGCTCTGTACTGATAATGGTGTAATGATTGCTTGGACTGGTATTGAGCACTTCCGCATGGGAAGATATGACCCTCCTCCTCCTGCAGAAGAACCTGAAGACTTTGTGTATGATATACGCCCAAGGTGGCCGCTGGGGGAAGAATATGCTGAAGGAAAAAGTGTAGCACGTTCGTTAAGAACAGCCCGCATTCATCCTTCTCTTACATCTATAATTCAAGCATCATTGCAACAATGA

>Glyma.03g027900.3 sequence-type=CDS polypeptide=Glyma.03g027900.3.p locus=Glyma.03g027900 ID=Glyma.03g027900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTACTTTCTCTCTCTACATTAGGGTTTTCTTCAGCACTTTCGCGCCTAAACTTCTTCCCAAAGCCACCACCTTCTCTTTTCTCCGCACTCACCACTTTCCGCAGAAACCAACTTCCACTCAAATCGTCGCTCGCCGCATCGAAACGTGACGGCGATGTTGTCGTTTTGGGCATCGAAACCAGCTGCGACGATACCGCCGCTGCTGTCGTGAGAAGTGACGGTGAAATTCTCAGCCAAGTAGTGTCTTCTCAGGCAGACCTGCTTGCGAAATATGGAGGTGTTGCTCCAAAAATGGCAGAAGAAGCTCACTCAAAAGTTATAGACCAGGTTGTGCAAGAAGCCCTTGATAAAGCTTATCTGACCGAGAAGGATCTTACTGCTGTTGCTGTTACTATTGGTCCTGGTTTGAGTCTCTGCCTTCGTGTGGGGGTGCAGAAAGCCCGGAAAATTGCTGGCGGATTTAATTTACCAATTATTGGCATACATCACATGGAAGCTCATGCTCTGGTTGCCAGGTTAATTGAGAAAGATTTGCAGTTTCCATTCATGGCCCTACTTATTTCAGGGGGACACAATTTACTCGTTCTTGCTCGTGATCTTGGGCAGTACATACAACTTGGAACTACGATAGATGATGCTATCGGTGAGGCATATGACAAGACAGCAAAATGGCTCGGACTGGATTTGAGGAGAAGTGGTGGTCCTGCTATTGAGAAGCTTGCTATGGAGGGTAATGCTGAATCAGTCAAGTTTTCTATTCCAATGAAGCAGCACAAAGACTGCAATTTTTCCTATGCTGGTCTAAAAACCCAAGTACGTCTGGCAATTGAGTCCAAAAAGATTGATGCCAAAATTCCAATTTCTTCAGCAAGTAATGGAGATCGACTGTCACGGGCTGATATTGCTGCTTCTTTTCAGCGAATTGCTGTGTTACATCTTGAGGAGAGGTGTGAACGAGCAATACAGTGGGCATTGAAGATGGAGCCTTCCATAAGACACTTGGTTGTCTCTGGTGGAGTTGCATCAAATCAATATGTCCGAGCCCGGCTTGATATGGTTGTGAAGAAGAATGGCCTGCAACTTGTATGCCCACCTCCTCGGCTCTGTACTGATAATGTTGTAATAGGCTTCCAACCAGGGCCAACCTTCTCAGGAGAAATATTCACATCCAGGACACCCTATGCCCTCTTTGTGAATCTCATCAGGAGGAGGCTGGGCATTTGTTTTTCCACTGCAAGATGA
Predicted protein sequences of Glyma.03G027900
>Glyma.03g027900.1.p sequence-type=predicted peptide transcript=Glyma.03g027900.1 locus=Glyma.03g027900 ID=Glyma.03g027900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVLSLSTLGFSSALSRLNFFPKPPPSLFSALTTFRRNQLPLKSSLAASKRDGDVVVLGIETSCDDTAAAVVRSDGEILSQVVSSQADLLAKYGGVAPKMAEEAHSKVIDQVVQEALDKAYLTEKDLTAVAVTIGPGLSLCLRVGVQKARKIAGGFNLPIIGIHHMEAHALVARLIEKDLQFPFMALLISGGHNLLVLARDLGQYIQLGTTIDDAIGEAYDKTAKWLGLDLRRSGGPAIEKLAMEGNAESVKFSIPMKQHKDCNFSYAGLKTQVRLAIESKKIDAKIPISSASNGDRLSRADIAASFQRIAVLHLEERCERAIQWALKMEPSIRHLVVSGGVASNQYVRARLDMVVKKNGLQLVCPPPRLCTDNGVMIAWTGIEHFRMGRYDPPPPAEEPEDFVYDIRPRWPLGEEYAEGKSVARSLRTARIHPSLTSIIQASLQQ*

>Glyma.03g027900.2.p sequence-type=predicted peptide transcript=Glyma.03g027900.2 locus=Glyma.03g027900 ID=Glyma.03g027900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAEEAHSKVIDQVVQEALDKAYLTEKDLTAVAVTIGPGLSLCLRVGVQKARKIAGGFNLPIIGIHHMEAHALVARLIEKDLQFPFMALLISGGHNLLVLARDLGQYIQLGTTIDDAIGEAYDKTAKWLGLDLRRSGGPAIEKLAMEGNAESVKFSIPMKQHKDCNFSYAGLKTQVRLAIESKKIDAKIPISSASNGDRLSRADIAASFQRIAVLHLEERCERAIQWALKMEPSIRHLVVSGGVASNQYVRARLDMVVKKNGLQLVCPPPRLCTDNGVMIAWTGIEHFRMGRYDPPPPAEEPEDFVYDIRPRWPLGEEYAEGKSVARSLRTARIHPSLTSIIQASLQQ*

>Glyma.03g027900.3.p sequence-type=predicted peptide transcript=Glyma.03g027900.3 locus=Glyma.03g027900 ID=Glyma.03g027900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVLSLSTLGFSSALSRLNFFPKPPPSLFSALTTFRRNQLPLKSSLAASKRDGDVVVLGIETSCDDTAAAVVRSDGEILSQVVSSQADLLAKYGGVAPKMAEEAHSKVIDQVVQEALDKAYLTEKDLTAVAVTIGPGLSLCLRVGVQKARKIAGGFNLPIIGIHHMEAHALVARLIEKDLQFPFMALLISGGHNLLVLARDLGQYIQLGTTIDDAIGEAYDKTAKWLGLDLRRSGGPAIEKLAMEGNAESVKFSIPMKQHKDCNFSYAGLKTQVRLAIESKKIDAKIPISSASNGDRLSRADIAASFQRIAVLHLEERCERAIQWALKMEPSIRHLVVSGGVASNQYVRARLDMVVKKNGLQLVCPPPRLCTDNVVIGFQPGPTFSGEIFTSRTPYALFVNLIRRRLGICFSTAR*






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