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Report for Sequence Feature Glyma.03G015100

Feature Type:gene_model
Chromosome:Gm03
Start:1511145
stop:1514882
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03G015100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G00560.1AT NAD(P)-binding Rossmann-fold superfamily protein JGI N/AIEA
GO:0044237GO-bp cellular metabolic process JGI N/AIEA
GO:0045226GO-bp extracellular polysaccharide biosynthetic process JGI N/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0008831GO-mf dTDP-4-dehydrorhamnose reductase activity JGI N/AIEA
GO:0050662GO-mf coenzyme binding JGI N/AIEA
PTHR10491Panther DTDP-4-DEHYDRORHAMNOSE REDUCTASE JGI N/AIEA
PTHR10491:SF2Panther METHIONINE ADENOSYLTRANSFERASE 2 SUBUNIT BETA JGI N/AIEA
PF04321PFAM RmlD substrate binding domain JGI N/AIEA
GN7V-65896SoyCyc9-rxn dTDP-4-dehydrorhamnose reductase Plant Metabolic Network ISS

Expression Patterns of Glyma.03G015100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.03G015100 not represented in the dataset
Glyma.03G015100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03G015100
ParalogEvidenceComments
Glyma.07g075200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03G015100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g01730 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03G015100
>Glyma.03g015100.1 sequence-type=CDS polypeptide=Glyma.03g015100.1.p locus=Glyma.03g015100 ID=Glyma.03g015100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTAAGGTGAAGATTTTGGTTGTGGGAGGGACATGTTACTTGGGTCAGCATCTGCTACAAGTCTATGCACATGCCAATGCCAATGCCAATGCCAATATTAGTGGAACTCCTTTTGTTTTCGATCTCGCTTTCACCCATCACTCCTCTCCTCCTCCCCACCCTCTCTTAGATGCCATTCCTTCCTCCCTTCCTTTCCAAGTGGATTTGAAAACTGGCCTTGGATTTGAAGCCATTTCCAACACTTTTGGCCAGGTTCCTCGTGCTTGTGAAATCGATCCTGCCACTGCACATGCTATTAACTTGCCATCATCTCTTGTAAAATGGTTGCAAAGCTTTGAAAAGAGAACTACTCTTCTCATTCATCTCTCCACAGATCAAGTTTATGAAGGGGAGAAATCCTTTTACAAGGAAGAAGACATTGCTGTTCCAGTAAATGTTTATGGCAAAACTAAAGTGGCAGCAGAGCAGTTTATTTCAGAAAATTGTCCAAACTTTGCAATTTTGAGATGCAGTATCATCTATGGGCCACAAACAGTCTCACCAGTTCCAAAATCTCTTCCTAATCAGTGGATTGATGGTGCCCTTGCTAAAGTAGAAAAAGTGGAGTTCTTTCAAGATGAGTTCCGTTGTCCAATTTATGTTAAGGATCTTGTAAATATCATACTAGCTTTAACTACTCAATGGATATCAGAGGGCAAGCAAATGCAATTGTTACTTAATGTTGGTGGAGCTGATAGGGTGTCACGTGTTCAAATGGCTGAGGCTGTTGATCGAGGGGTGAAATCCCCAGCTGACATATCTATGGATATCACTAGATTGGTACAAACCCTAAGAATTCATCCTGTTTCGTTTAAAGATGGAGTGAGATTGACACTCACAACCTAG
Predicted protein sequences of Glyma.03G015100
>Glyma.03g015100.1.p sequence-type=predicted peptide transcript=Glyma.03g015100.1 locus=Glyma.03g015100 ID=Glyma.03g015100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSKVKILVVGGTCYLGQHLLQVYAHANANANANISGTPFVFDLAFTHHSSPPPHPLLDAIPSSLPFQVDLKTGLGFEAISNTFGQVPRACEIDPATAHAINLPSSLVKWLQSFEKRTTLLIHLSTDQVYEGEKSFYKEEDIAVPVNVYGKTKVAAEQFISENCPNFAILRCSIIYGPQTVSPVPKSLPNQWIDGALAKVEKVEFFQDEFRCPIYVKDLVNIILALTTQWISEGKQMQLLLNVGGADRVSRVQMAEAVDRGVKSPADISMDITRLVQTLRIHPVSFKDGVRLTLTT*






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