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Report for Sequence Feature Glyma.03G006500

Feature Type:gene_model
Chromosome:Gm03
Start:588224
stop:594098
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03G006500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G10310.1AT NAD(P)-binding Rossmann-fold superfamily protein JGI N/AIEA
GO:0006760GO-bp folic acid-containing compound metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0044237GO-bp cellular metabolic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0016616GO-mf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor EnsemblGenomesN/AIEA
GO:0050662GO-mf coenzyme binding JGI N/AIEA
KOG0725 KOG Reductases with broad range of substrate specificities JGI N/AIEA
PTHR24316Panther FAMILY NOT NAMED JGI N/AIEA
PF00106PFAM short chain dehydrogenase JGI N/AIEA
FASYN-ELONG-PWYSoyCyc9 fatty acid elongation -- saturated Plant Metabolic Network ISS
PWY-5156SoyCyc9 superpathway of fatty acid biosynthesis II (plant) Plant Metabolic Network ISS
PWY-5971SoyCyc9 palmitate biosynthesis II (bacteria and plants) Plant Metabolic Network ISS
PWY-5973SoyCyc9 cis-vaccenate biosynthesis Plant Metabolic Network ISS
PWY-5989SoyCyc9 stearate biosynthesis II (bacteria and plants) Plant Metabolic Network ISS
PWY-7388SoyCyc9 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Plant Metabolic Network ISS
GN7V-60124SoyCyc9-rxn fatty-acyl-CoA synthase Plant Metabolic Network ISS

Expression Patterns of Glyma.03G006500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.03G006500 not represented in the dataset
Glyma.03G006500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.03G006500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g006500 Wm82.a4.v1ISS As supplied by JGI
Glyma03g00880 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.03G006500
>Glyma.03g006500.2 sequence-type=transcript locus=Glyma.03g006500 ID=Glyma.03g006500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ttgaggaatacctttgaagtgcaaaagcaaaagttaccaagttggttgcagcattccactactttcagaaagctaattccaattctgttataacaaagttaattcagttagaatacagtagtataaatatgtaaagaagtggaattaaaaggatatgagaaaaatacttatctgaattagggtttcttttccccttttggcaATGATGAACGGAGGAGGAAGACGACGAATCGTGCTGATAACTGGAGTCGGAAAAGGACTCGGAAGAGCCCTGGCTCTTGAACTCGCCCATCGTGGTCACACTATAATTGGCTGCTCCCGTTCTCAAGATAACCTCAATTCCCTCCAATCCCAACTCTCTTTTTCTTCTTCCAACCATTTGTTACTCAACGCCGACGTGAGCTCCAATGAGAACGTTCAAGAAATGGCCCGCGTTGTCATGGACAATAGATCTGTTCCTGATATCATAGTGAACAATGCAGGTACAATCAACAAGAACAACAAGATATGGGAGGTTCCGCCGGAGGACTTCGACGCGGTCATGGACACCAACGTCAAAGGCACGGCGAACGTGCTGCGGCACTTTATCCCTCTCATGATAGCCGCGAAGAAGATGGAGGCCGTCATTGTGAACATGTCCTCGGGATGGGGAAGGTCCGGCGCCGCGCTGGTGTCCCCTTACTGTGCCTCCAAGTGGGCCATTGAAGGGCTGAGCAAGTCCGTCGCGAAGGAGGTGCCGGAAGGGATTGCCGTGGTGGCGCTCAACCCCGGCGTGATCAACACCGACATGCTCGCCTCCTGCTTCGGGCCATCGGCTTTACTCTATCAGCAGCCGCAGGCGTGGGCTCTCAAGGCTGCAACCATGATTCTCAATCTCACCCCGGCTGACAATGGAATACGTTGCATTGGATGATGGCCAAAGTTCCAGGGAGATGAATTTTGCTAGTCTTTCTTCCTTTGAAACTGGGAAGTTGTTTCTGCCATGAAGATTGATTGCACAAATTATTAGCTATATGCCAATACCTGTTGAAAACTTGAAGAACTTAATAAAAAAAGGTCTCAGAATCATTATGTGTAACTTAAGAGTTAAGATGACTACTTGGTCACTCAGTTGTAACTAGTGGACTTTGAGGAAACCTTTTCGGCAGAGGAAAAAGATCATAAGAGGGAGTACATTATGTAGTCATTGTAAATTTCTGTTTTGTTAGTCCTTGATATTCTGGTGTGAGTTGTATCATTGTTCTTTAGTTGAATTACCCCCTTCACATTTCCATGGATTGATGTTTTAGTTATTTGACGATAGGGACCAAAACATGTAATGTTTAGGTATAG

>Glyma.03g006500.3 sequence-type=transcript locus=Glyma.03g006500 ID=Glyma.03g006500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGATAGCAATAACAACCTATGAAGcaccgacacggtcaccggacacgacacagacacATGTAATGTTCAAAATATAGAACATGATACGGGTGTCGTGTCAGTGTTGAACACTGATACAAACGCGTGTCGAACACCGGACACGACAAGAAACTAGAGTGTCCGTGCTTCATAGATaacaacacaacaggtcacataccagaagccagcaatcatattaacaggccaaggagaatcacaaagaagcccaaataccttgaggaatacctttgaagtgcaaaagcaaaagttaccaagttggttgcagcattccactactttcagaaagctaattccaattctgttataacaaagttaattcagttagaatacagtagtataaatatgtaaagaagtggaattaaaaggatatgagaaaaatacttatctgaattagggtttcttttccccttttggcaATGATGAACGGAGGAGGAAGACGACGAATCGTGCTGATAACTGGAGTCGGAAAAGGACTCGGAAGAGCCCTGGCTCTTGAACTCGCCCATCGTGGTCACACTATAATTGGCTGCTCCCGTTCTCAAGATAACCTCAATTCCCTCCAATCCCAACTCTCTTTTTCTTCTTCCAACCATTTGTTACTCAACGCCGACGTGAGCTCCAATGAGAACGTTCAAGAAATGGCCCGCGTTGTCATGGACAATAGATCTGTTCCTGATATCATAGTGAACAATGCAGGTACAATCAACAAGAACAACAAGATATGGGAGGTTCCGCCGGAGGACTTCGACGCGGTCATGGACACCAACGTCAAAGGCACGGCGAACGTGCTGCGGCACTTTATCCCTCTCATGATAGCCGCGAAGAAGATGGAGGCCGTCATTGTGAACATGTCCTCGGGATGGGGAAGGTCCGGCGCCGCGCTGGTGTCCCCTTACTGTGCCTCCAAGTGGGCCATTGAAGGGCTGAGCAAGTCCGTCGCGAAGGAGGTGCCGGAAGGGATTGCCGTGGTGGCGCTCAACCCCGGCGTGATCAACACCGACATGCTCGCCTCCTGCTTCGGGCCATCGGCTTTACTCTATCAGCAGCCGCAGGCGTGGGCTCTCAAGGCTGCAACCATGATTCTCAATCTCACCCCGGCTGACAATGGTGCCTCTCTCACTGTATGAACTTAATAATCCGTGCTTACATTGTTGAGAATTCTATCATTTTTAGAGAAAACTAACTTGTTGGAAGAATGCTTAGCTTTTACATGTTCGCTAATTAGGTGAAGAAATGCTAATACAATTCTGTTTACTTTTTTTTAGAACAACAACTTTTAGTCAACTGTTGTGACAAGATTGAAGTGATACTCTCGATTAATATCAATCAAATTACCATTTTCTTGGGTCTTGCAGTTATATGTATTGCTATTTGCTAAGTTCCCCCTTACTTTAGGCTTTCCAAGTTATTTACCTTTTGAATCCTGTTTGCCGGAGTGAATACATTATTGGATATGTGTAAGTGGGTTGGATATGAAA
Coding sequences of Glyma.03G006500
>Glyma.03g006500.1 sequence-type=CDS polypeptide=Glyma.03g006500.1.p locus=Glyma.03g006500 ID=Glyma.03g006500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGAACGGAGGAGGAAGACGACGAATCGTGCTGATAACTGGAGTCGGAAAAGGACTCGGAAGAGCCCTGGCTCTTGAACTCGCCCATCGTGGTCACACTATAATTGGCTGCTCCCGTTCTCAAGATAACCTCAATTCCCTCCAATCCCAACTCTCTTTTTCTTCTTCCAACCATTTGTTACTCAACGCCGACGTGAGCTCCAATGAGAACGTTCAAGAAATGGCCCGCGTTGTCATGGACAATAGATCTGTTCCTGATATCATAGTGAACAATGCAGGTACAATCAACAAGAACAACAAGATATGGGAGGTTCCGCCGGAGGACTTCGACGCGGTCATGGACACCAACGTCAAAGGCACGGCGAACGTGCTGCGGCACTTTATCCCTCTCATGATAGCCGCGAAGAAGATGGAGGCCGTCATTGTGAACATGTCCTCGGGATGGGGAAGGTCCGGCGCCGCGCTGGTGTCCCCTTACTGTGCCTCCAAGTGGGCCATTGAAGGGCTGAGCAAGTCCGTCGCGAAGGAGGTGCCGGAAGGGATTGCCGTGGTGGCGCTCAACCCCGGCGTGATCAACACCGACATGCTCGCCTCCTGCTTCGGGCCATCGGCTTTACTCTATCAGCAGCCGCAGGCGTGGGCTCTCAAGGCTGCAACCATGATTCTCAATCTCACCCCGGCTGACAATGGTGCCTCTCTCACTGAATACGTTGCATTGGATGATGGCCAAAGTTCCAGGGAGATGAATTTTGCTAGTCTTTCTTCCTTTGAAACTGGGAAGTTGTTTCTGCCATGA

>Glyma.03g006500.2 sequence-type=CDS polypeptide=Glyma.03g006500.2.p locus=Glyma.03g006500 ID=Glyma.03g006500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGAACGGAGGAGGAAGACGACGAATCGTGCTGATAACTGGAGTCGGAAAAGGACTCGGAAGAGCCCTGGCTCTTGAACTCGCCCATCGTGGTCACACTATAATTGGCTGCTCCCGTTCTCAAGATAACCTCAATTCCCTCCAATCCCAACTCTCTTTTTCTTCTTCCAACCATTTGTTACTCAACGCCGACGTGAGCTCCAATGAGAACGTTCAAGAAATGGCCCGCGTTGTCATGGACAATAGATCTGTTCCTGATATCATAGTGAACAATGCAGGTACAATCAACAAGAACAACAAGATATGGGAGGTTCCGCCGGAGGACTTCGACGCGGTCATGGACACCAACGTCAAAGGCACGGCGAACGTGCTGCGGCACTTTATCCCTCTCATGATAGCCGCGAAGAAGATGGAGGCCGTCATTGTGAACATGTCCTCGGGATGGGGAAGGTCCGGCGCCGCGCTGGTGTCCCCTTACTGTGCCTCCAAGTGGGCCATTGAAGGGCTGAGCAAGTCCGTCGCGAAGGAGGTGCCGGAAGGGATTGCCGTGGTGGCGCTCAACCCCGGCGTGATCAACACCGACATGCTCGCCTCCTGCTTCGGGCCATCGGCTTTACTCTATCAGCAGCCGCAGGCGTGGGCTCTCAAGGCTGCAACCATGATTCTCAATCTCACCCCGGCTGACAATGGAATACGTTGCATTGGATGA

>Glyma.03g006500.3 sequence-type=CDS polypeptide=Glyma.03g006500.3.p locus=Glyma.03g006500 ID=Glyma.03g006500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGAACGGAGGAGGAAGACGACGAATCGTGCTGATAACTGGAGTCGGAAAAGGACTCGGAAGAGCCCTGGCTCTTGAACTCGCCCATCGTGGTCACACTATAATTGGCTGCTCCCGTTCTCAAGATAACCTCAATTCCCTCCAATCCCAACTCTCTTTTTCTTCTTCCAACCATTTGTTACTCAACGCCGACGTGAGCTCCAATGAGAACGTTCAAGAAATGGCCCGCGTTGTCATGGACAATAGATCTGTTCCTGATATCATAGTGAACAATGCAGGTACAATCAACAAGAACAACAAGATATGGGAGGTTCCGCCGGAGGACTTCGACGCGGTCATGGACACCAACGTCAAAGGCACGGCGAACGTGCTGCGGCACTTTATCCCTCTCATGATAGCCGCGAAGAAGATGGAGGCCGTCATTGTGAACATGTCCTCGGGATGGGGAAGGTCCGGCGCCGCGCTGGTGTCCCCTTACTGTGCCTCCAAGTGGGCCATTGAAGGGCTGAGCAAGTCCGTCGCGAAGGAGGTGCCGGAAGGGATTGCCGTGGTGGCGCTCAACCCCGGCGTGATCAACACCGACATGCTCGCCTCCTGCTTCGGGCCATCGGCTTTACTCTATCAGCAGCCGCAGGCGTGGGCTCTCAAGGCTGCAACCATGATTCTCAATCTCACCCCGGCTGACAATGGTGCCTCTCTCACTGTATGA
Predicted protein sequences of Glyma.03G006500
>Glyma.03g006500.1.p sequence-type=predicted peptide transcript=Glyma.03g006500.1 locus=Glyma.03g006500 ID=Glyma.03g006500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMNGGGRRRIVLITGVGKGLGRALALELAHRGHTIIGCSRSQDNLNSLQSQLSFSSSNHLLLNADVSSNENVQEMARVVMDNRSVPDIIVNNAGTINKNNKIWEVPPEDFDAVMDTNVKGTANVLRHFIPLMIAAKKMEAVIVNMSSGWGRSGAALVSPYCASKWAIEGLSKSVAKEVPEGIAVVALNPGVINTDMLASCFGPSALLYQQPQAWALKAATMILNLTPADNGASLTEYVALDDGQSSREMNFASLSSFETGKLFLP*

>Glyma.03g006500.2.p sequence-type=predicted peptide transcript=Glyma.03g006500.2 locus=Glyma.03g006500 ID=Glyma.03g006500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMNGGGRRRIVLITGVGKGLGRALALELAHRGHTIIGCSRSQDNLNSLQSQLSFSSSNHLLLNADVSSNENVQEMARVVMDNRSVPDIIVNNAGTINKNNKIWEVPPEDFDAVMDTNVKGTANVLRHFIPLMIAAKKMEAVIVNMSSGWGRSGAALVSPYCASKWAIEGLSKSVAKEVPEGIAVVALNPGVINTDMLASCFGPSALLYQQPQAWALKAATMILNLTPADNGIRCIG*

>Glyma.03g006500.3.p sequence-type=predicted peptide transcript=Glyma.03g006500.3 locus=Glyma.03g006500 ID=Glyma.03g006500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMNGGGRRRIVLITGVGKGLGRALALELAHRGHTIIGCSRSQDNLNSLQSQLSFSSSNHLLLNADVSSNENVQEMARVVMDNRSVPDIIVNNAGTINKNNKIWEVPPEDFDAVMDTNVKGTANVLRHFIPLMIAAKKMEAVIVNMSSGWGRSGAALVSPYCASKWAIEGLSKSVAKEVPEGIAVVALNPGVINTDMLASCFGPSALLYQQPQAWALKAATMILNLTPADNGASLTV*






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