Glyma.03G001900

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Report for Sequence Feature Glyma.03G001900

Feature Type:	gene_model
Chromosome:	Gm03
Start:	204061
stop:	205995
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.03G001900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G20280.1	AT	TBP-associated factor 11	JGI	N/A	IEA
GO:0006367	GO-bp	transcription initiation from RNA polymerase II promoter	EnsemblGenomes	N/A	IEA
GO:0006367	GO-bp	transcription initiation from RNA polymerase II promoter	JGI	N/A	IEA
GO:0051123	GO-bp	RNA polymerase II transcriptional preinitiation complex assembly	EnsemblGenomes	N/A	IEA
GO:1903506	GO-bp	regulation of nucleic acid-templated transcription	EnsemblGenomes	N/A	IEA
GO:1903508	GO-bp	positive regulation of nucleic acid-templated transcription	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	JGI	N/A	IEA
GO:0005669	GO-cc	transcription factor TFIID complex	EnsemblGenomes	N/A	IEA
GO:0003713	GO-mf	transcription coactivator activity	EnsemblGenomes	N/A	IEA
GO:0008134	GO-mf	transcription factor binding	EnsemblGenomes	N/A	IEA
GO:0046982	GO-mf	protein heterodimerization activity	EnsemblGenomes	N/A	IEA
KOG3219	KOG	Transcription initiation factor TFIID, subunit TAF11	JGI	N/A	IEA
PTHR13218	Panther	FAMILY NOT NAMED	JGI	N/A	IEA
PTHR13218:SF5	Panther		JGI	N/A	IEA
PF04719	PFAM	hTAFII28-like protein conserved region	JGI	N/A	IEA

Expression Patterns of Glyma.03G001900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.03G001900 not represented in the dataset	Glyma.03G001900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.03G001900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g001900	Wm82.a4.v1	ISS	As supplied by JGI
Glyma03g00420	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.03G001900

Limit To All Plant Sequences

>Glyma.03g001900.2 sequence-type=transcript locus=Glyma.03g001900 ID=Glyma.03g001900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCTTCCGGTCTGAAACAAAAGGAAAGGATGAAGCAATCAAAGGATCCGTTCGAAGCAGCGTTCGAGGAATCGCCGCCAGAATCCCCAACGGCTACGGAGACAGAGgaggaggaCAACATGGACGTGGAGCTCGCCAAGCTCCCTTCCACCGGCGACCCTCACAAAATGGCCAAGATGCAGGCCATTTTGTCGCAATTCACCGAAGAGCAGATGAGTCGATACGAGTCCTTCCGGAGGGCTGGCTTTCAGAAAGCCAACATGAAAAGGTTATTGGCTAGCATCACTGGGACCCAGAAAATTTCTGTGCCCATGACGATTGTTGTATCGGGCATTGCAAAAATGTTTGTTGGTGAAGTTGTTGAAACAGCTAGAATAGTTATGAAAGAGAGGAAGGAATCTGGACCAATCCGGCCTTGTCATCTGAGAGAAGCATATAGACGACTAAAGCTTGAAGGAAAAGTCTTTAAGAGATCATCCTCGAGGCTCTTCCGGTAGATGAACCAAATATGAATATTGTGTGCATCAGCTTCACTAGTTTGCTATAGTGGCTTTCGGGTAGATTAAATTTTGTAGTCTGCACCTTCTTGTTTTCAACATCTTGACGTTCATTTAACTGGAGCTAGTGAATGTGAATCAATATTAGAAGTAAATTGGGAAAATTTCCCCATTTCTG

>Glyma.03g001900.3 sequence-type=transcript locus=Glyma.03g001900 ID=Glyma.03g001900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCTTCCGGTCTGAAACAAAAGGAAAGGATGAAGCAATCAAAGGATCCGTTCGAAGCAGCGTTCGAGGAATCGCCGCCAGAATCCCCAACGGCTACGGAGACAGAGgaggaggaggaCAACATGGACGTGGAGCTCGCCAAGCTCCCTTCCACCGGCGACCCTCACAAAATGGCCAAGATGCAGGCCATTTTGTCGCAATTCACCGAAGAGCAGATGAGTCGATACGAGTCCTTCCGGAGGGCTGGCTTTCAGAAAGCCAACATGAAAAGGTTATTGGCTAGCATCACTGGGACCCAGAAAATTTCTGTGCCCATGACGATTGTTGTATCGGGCATTGCAAAAATGTTTGTTGGTGAAGTTGTTGAAACAGCTAGAATAGTTATGAAAGAGAGGAAGGAATCTGGACCAATCCGGCCTTGTCATCTGAGAGAAGCATATAGACGACTAAAGCTTGAAGGAAAAGTCTTTAAGAGATCATCCTCGAGGCTCTTCCGGTAGATGAACCAAATATGAATATTGTGTGCATCAGCTTCACTAGTTTGCTATAGTGGCTTTCGGGTAGATTAAATTTTGTAGTCTGCACCTTCTTGTTTTCAACATCTTGACGTTCATTTAACTGGAGCTAGTGAATGTGAATCAATATTAGAAGTAAATTGGGAAAATTTCCCCATTTCTG

Coding sequences of Glyma.03G001900

Limit To All Plant Sequences

>Glyma.03g001900.1 sequence-type=CDS polypeptide=Glyma.03g001900.1.p locus=Glyma.03g001900 ID=Glyma.03g001900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGCAATCAAAGGATCCGTTCGAAGCAGCGTTCGAGGAATCGCCGCCAGAATCCCCAACGGCTACGGAGACAGAGGCAGAGACGCAAAACCCTACTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTTTTCTGGTGTTGCTGTAGTAGCACTGAATCCACAACAACCTCAGAATCAGAAAGTGAAGAACAAAGACAATGAGGAAGAGGAGGAGGAGGAGGACAACATGGACGTGGAGCTCGCCAAGCTCCCTTCCACCGGCGACCCTCACAAAATGGCCAAGATGCAGGCCATTTTGTCGCAATTCACCGAAGAGCAGATGAGTCGATACGAGTCCTTCCGGAGGGCTGGCTTTCAGAAAGCCAACATGAAAAGGTTATTGGCTAGCATCACTGGGACCCAGAAAATTTCTGTGCCCATGACGATTGTTGTATCGGGCATTGCAAAAATGTTTGTTGGTGAAGTTGTTGAAACAGCTAGAATAGTTATGAAAGAGAGGAAGGAATCTGGACCAATCCGGCCTTGTCATCTGAGAGAAGCATATAGACGACTAAAGCTTGAAGGAAAAGTCTTTAAGAGATCATCCTCGAGGCTCTTCCGGTAG

>Glyma.03g001900.2 sequence-type=CDS polypeptide=Glyma.03g001900.2.p locus=Glyma.03g001900 ID=Glyma.03g001900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGCAATCAAAGGATCCGTTCGAAGCAGCGTTCGAGGAATCGCCGCCAGAATCCCCAACGGCTACGGAGACAGAGGAGGAGGACAACATGGACGTGGAGCTCGCCAAGCTCCCTTCCACCGGCGACCCTCACAAAATGGCCAAGATGCAGGCCATTTTGTCGCAATTCACCGAAGAGCAGATGAGTCGATACGAGTCCTTCCGGAGGGCTGGCTTTCAGAAAGCCAACATGAAAAGGTTATTGGCTAGCATCACTGGGACCCAGAAAATTTCTGTGCCCATGACGATTGTTGTATCGGGCATTGCAAAAATGTTTGTTGGTGAAGTTGTTGAAACAGCTAGAATAGTTATGAAAGAGAGGAAGGAATCTGGACCAATCCGGCCTTGTCATCTGAGAGAAGCATATAGACGACTAAAGCTTGAAGGAAAAGTCTTTAAGAGATCATCCTCGAGGCTCTTCCGGTAG

>Glyma.03g001900.3 sequence-type=CDS polypeptide=Glyma.03g001900.3.p locus=Glyma.03g001900 ID=Glyma.03g001900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGCAATCAAAGGATCCGTTCGAAGCAGCGTTCGAGGAATCGCCGCCAGAATCCCCAACGGCTACGGAGACAGAGGAGGAGGAGGACAACATGGACGTGGAGCTCGCCAAGCTCCCTTCCACCGGCGACCCTCACAAAATGGCCAAGATGCAGGCCATTTTGTCGCAATTCACCGAAGAGCAGATGAGTCGATACGAGTCCTTCCGGAGGGCTGGCTTTCAGAAAGCCAACATGAAAAGGTTATTGGCTAGCATCACTGGGACCCAGAAAATTTCTGTGCCCATGACGATTGTTGTATCGGGCATTGCAAAAATGTTTGTTGGTGAAGTTGTTGAAACAGCTAGAATAGTTATGAAAGAGAGGAAGGAATCTGGACCAATCCGGCCTTGTCATCTGAGAGAAGCATATAGACGACTAAAGCTTGAAGGAAAAGTCTTTAAGAGATCATCCTCGAGGCTCTTCCGGTAG

Predicted protein sequences of Glyma.03G001900

Limit To All Plant Sequences

>Glyma.03g001900.1.p sequence-type=predicted peptide transcript=Glyma.03g001900.1 locus=Glyma.03g001900 ID=Glyma.03g001900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKQSKDPFEAAFEESPPESPTATETEAETQNPTPPPPPPPPPSSFSGVAVVALNPQQPQNQKVKNKDNEEEEEEEDNMDVELAKLPSTGDPHKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASITGTQKISVPMTIVVSGIAKMFVGEVVETARIVMKERKESGPIRPCHLREAYRRLKLEGKVFKRSSSRLFR*

>Glyma.03g001900.2.p sequence-type=predicted peptide transcript=Glyma.03g001900.2 locus=Glyma.03g001900 ID=Glyma.03g001900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKQSKDPFEAAFEESPPESPTATETEEEDNMDVELAKLPSTGDPHKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASITGTQKISVPMTIVVSGIAKMFVGEVVETARIVMKERKESGPIRPCHLREAYRRLKLEGKVFKRSSSRLFR*

>Glyma.03g001900.3.p sequence-type=predicted peptide transcript=Glyma.03g001900.3 locus=Glyma.03g001900 ID=Glyma.03g001900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKQSKDPFEAAFEESPPESPTATETEEEEDNMDVELAKLPSTGDPHKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASITGTQKISVPMTIVVSGIAKMFVGEVVETARIVMKERKESGPIRPCHLREAYRRLKLEGKVFKRSSSRLFR*

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