Glyma.02g309100

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Report for Sequence Feature Glyma.02g309100

Feature Type:	gene_model
Chromosome:	Gm02
Start:	48270927
stop:	48274389
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.02g309100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G57820.1	AT	Zinc finger (C3HC4-type RING finger) family protein	JGI	N/A	IEA
GO:0010216	GO-bp	maintenance of DNA methylation	EnsemblGenomes	N/A	IEA
GO:0016567	GO-bp	protein ubiquitination	EnsemblGenomes	N/A	IEA
GO:0090308	GO-bp	regulation of methylation-dependent chromatin silencing	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0005720	GO-cc	nuclear heterochromatin	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
GO:0008270	GO-mf	zinc ion binding	JGI	N/A	IEA
GO:0042393	GO-mf	histone binding	JGI	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
GO:0046872	GO-mf	metal ion binding	JGI	N/A	IEA
GO:0061630	GO-mf	ubiquitin protein ligase activity	EnsemblGenomes	N/A	IEA
PTHR14140	Panther	E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED	JGI	N/A	IEA
PTHR14140:SF1	Panther		JGI	N/A	IEA
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI	N/A	IEA
PF02182	PFAM	SAD/SRA domain	JGI	N/A	IEA

Expression Patterns of Glyma.02g309100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g309100 not represented in the dataset	Glyma.02g309100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.02g309100

Paralog	Evidence	Comments
Glyma.14g003700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g309100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma02g47920	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.02g309100

Limit To All Plant Sequences

>Glyma.02g309100.2 sequence-type=transcript locus=Glyma.02g309100 ID=Glyma.02g309100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCTATAAAAAGAAGCAGAAATTGTTGGCAGTGAGAAAAATGGCGCAGCTTCCCTGCGACTCCGATGGCGTCTGCATGCTCTGCAAACAGAAACCCAGTCCCTCCCAAACCCTCTCCTGTAGAACATGTGCTACTCCCTGGCACCTTTCGTGTCTCCCTTCGGCCCCTCTCTCCCTCTCCGACTCACATTGGGACTGCCCCGACTGTTCCGACACCTCCAACCATTACCCCGTCGCTCCCACCGCCGACCTTGTCTCCGCCGTTCATGCCATTCAGGCCGACACCTCTCTCACTGACCAGGAGAAGGCAAAGAAACGTCAAGAACTCCTCGCTGGCTCTTCCGACTCCTCAAAGGACAAAGCCAAAACCAAAGACATTTTTGACGGAAGCTTAAATTGCTCCATATGCATGCAGTTACCGGAGAGACACCTTGTGGGCACAACTTGTGTTTGAGATGTTTCGAGAAGTGGGTCGGACAGGGGAAGCGCACCTGTGCCAATTGCCGTGCTCAAATCCCGGCGAAGATGGCGAGTCAGCCGAGGATCAACTCTCAGCTGGCAATGGCCATCCGATTGGCGAAGGCGGCCAAGTCGGGAGAAGGGTCCTCGGGCCCACCCAAGGTGTACCACTTTGTCCGCAACCAGGACCGCCCCGATACCGCATTCACCACAGAGCGAGCCAAGAAGACTGGGAAAGCCAATGCTTGCAGTGGTAAGATTTTTGTGACTGTTCCTCCTGACCATTTTGGTCCCATCCCGTCTGAAAACGACCCCATCAGGAACCGCGGTGTTCTTGTTGGTGACACGTGGGAGGACAGGATGGAGTGTCGCCAGTGGGGTGCTCATTTGCCTCATGTTGCCGGCATTGCTGGACAGAGTGGCTATGGTTCCCAGTCTGTTGCCCTTTCTGGTGGTTACGAGGATGACGAGGATCACGGTGAGTGGTTCCTTTACACTGGCAGTGGTGGCAGAGATCTCAGTGGTAACAAACGAACCAACAAGCTTCAATCCTTTGACCAGAAGTTTGAAAACATGAACGAGGCCTTGAGAGTCAGCTGCAGGAAGGGTTATCCCGTTCGGGTTGTAAGGTCGCACAAGGAAAAGCGTTCTTCTTATGCACCGGAGTCTGGAGTGCGTTACGATGGAGTTTATAGAATAGAGAAATGCTGGCGCAAAAATGGAACACAAGGTTGCAAGGTTTGTAGGTATTTGTTTGTGAGATGTGACAATGAGCCAGCACCCTGGACAAGTGATGAAATTGGAGATCGCCCACGCCCACTGCCTAAAATTGATGAGTTGAAGGGTGCGGTTGATATAACTGAAAGGAAGGGTGATCCATCGTGGGATTTTGATGAGGAAAAGGGGTCCTGGTTGTGGAAGAAGCCTCCACCAGAAAGCAAGAAATCAGTGGACATTAAAGCTGAAGATGGAACAACAATCAGAGTTAAACGGAAAGCAAAAAATGTGTCCGTGAAAGAAAGGCTATTGAAAGAGTTTGGTTGCCAAATATGTCGCAAGGCGATGGCTTCCCCTCTTACTACACCTTGTGCTCACAACTTCTGCAAAGCCTGTTTGGAGGGTGCCTTTTCTGGCCAAAGTTTCATCAGAAATAGGGCATGTGGAGGTGGACGCACTTTACGAGCGCAGAAGAATTTTATGAAATGCCCATCATGTTCAACTGACATTGCTGACTTTCTCCAGAATCCACAGGTTAATAGAGAAATGCTGGCTGTTATAGAATCACTACAACGCCAGGCTGAAGATGAAAATTCTGAAGAGTCAAGTGATAAAAATGATGAAAATCTGCATGACCCAACTGAGGTTTCTAAACCTTGTGATTCTAGTGATAAGGTCCTGGAGGAAATTAAGGACAATGAGCTGAATCAGCCACACAAGCGAAGGAAAGAGTGAAGGCCGGGTTATTTTGGTCCTTTGGATTATGGGTTTTCATTAAACAGCAAGGGACGGACTGCTGATGCAATTTTTAAGTGCTATAGATTGCTAGATATTGACTTATATATGGTCTTTTGATATATTTTTTCCTTGTCTTGGTGTGTTATGATCGGAGTAGAGGTTCATGTGATAGAAAATTTAAACTGTAATGCATATCTTAATGCATTATGTGTTTTTATTGAAGATGTTATGTTAACTACTAATAGTATTAAACAAGTTTGAATTTTTAATGTTGACTTCCGTTGTAAAGTTATTTAAATTATGATATAATATAAAGATAGGATTAAAAAACTTCATACTACAATGCATTGTAGGTACACACATTAGACTAATAGTATGCACGGGGTAGATTATG

Coding sequences of Glyma.02g309100

Limit To All Plant Sequences

>Glyma.02g309100.1 sequence-type=CDS polypeptide=Glyma.02g309100.1.p locus=Glyma.02g309100 ID=Glyma.02g309100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGCAGCTTCCCTGCGACTCCGATGGCGTCTGCATGCTCTGCAAACAGAAACCCAGTCCCTCCCAAACCCTCTCCTGTAGAACATGTGCTACTCCCTGGCACCTTTCGTGTCTCCCTTCGGCCCCTCTCTCCCTCTCCGACTCACATTGGGACTGCCCCGACTGTTCCGACACCTCCAACCATTACCCCGTCGCTCCCACCGCCGACCTTGTCTCCGCCGTTCATGCCATTCAGGCCGACACCTCTCTCACTGACCAGGAGAAGGCAAAGAAACGTCAAGAACTCCTCGCTGGCTCTTCCGACTCCTCAAAGGACAAAGCCAAAACCAAAGACATTTTTGACGGAAGCTTAAATTGCTCCATATGCATGCAGTTACCGGAGAGGCCCGTCACGACACCTTGTGGGCACAACTTGTGTTTGAGATGTTTCGAGAAGTGGGTCGGACAGGGGAAGCGCACCTGTGCCAATTGCCGTGCTCAAATCCCGGCGAAGATGGCGAGTCAGCCGAGGATCAACTCTCAGCTGGCAATGGCCATCCGATTGGCGAAGGCGGCCAAGTCGGGAGAAGGGTCCTCGGGCCCACCCAAGGTGTACCACTTTGTCCGCAACCAGGACCGCCCCGATACCGCATTCACCACAGAGCGAGCCAAGAAGACTGGGAAAGCCAATGCTTGCAGTGGTAAGATTTTTGTGACTGTTCCTCCTGACCATTTTGGTCCCATCCCGTCTGAAAACGACCCCATCAGGAACCGCGGTGTTCTTGTTGGTGACACGTGGGAGGACAGGATGGAGTGTCGCCAGTGGGGTGCTCATTTGCCTCATGTTGCCGGCATTGCTGGACAGAGTGGCTATGGTTCCCAGTCTGTTGCCCTTTCTGGTGGTTACGAGGATGACGAGGATCACGGTGAGTGGTTCCTTTACACTGGCAGTGGTGGCAGAGATCTCAGTGGTAACAAACGAACCAACAAGCTTCAATCCTTTGACCAGAAGTTTGAAAACATGAACGAGGCCTTGAGAGTCAGCTGCAGGAAGGGTTATCCCGTTCGGGTTGTAAGGTCGCACAAGGAAAAGCGTTCTTCTTATGCACCGGAGTCTGGAGTGCGTTACGATGGAGTTTATAGAATAGAGAAATGCTGGCGCAAAAATGGAACACAAGGTTGCAAGGTTTGTAGGTATTTGTTTGTGAGATGTGACAATGAGCCAGCACCCTGGACAAGTGATGAAATTGGAGATCGCCCACGCCCACTGCCTAAAATTGATGAGTTGAAGGGTGCGGTTGATATAACTGAAAGGAAGGGTGATCCATCGTGGGATTTTGATGAGGAAAAGGGGTCCTGGTTGTGGAAGAAGCCTCCACCAGAAAGCAAGAAATCAGTGGACATTAAAGCTGAAGATGGAACAACAATCAGAGTTAAACGGAAAGCAAAAAATGTGTCCGTGAAAGAAAGGCTATTGAAAGAGTTTGGTTGCCAAATATGTCGCAAGGCGATGGCTTCCCCTCTTACTACACCTTGTGCTCACAACTTCTGCAAAGCCTGTTTGGAGGGTGCCTTTTCTGGCCAAAGTTTCATCAGAAATAGGGCATGTGGAGGTGGACGCACTTTACGAGCGCAGAAGAATTTTATGAAATGCCCATCATGTTCAACTGACATTGCTGACTTTCTCCAGAATCCACAGGTTAATAGAGAAATGCTGGCTGTTATAGAATCACTACAACGCCAGGCTGAAGATGAAAATTCTGAAGAGTCAAGTGATAAAAATGATGAAAATCTGCATGACCCAACTGAGGTTTCTAAACCTTGTGATTCTAGTGATAAGGTCCTGGAGGAAATTAAGGACAATGAGCTGAATCAGCCACACAAGCGAAGGAAAGAGTGA

>Glyma.02g309100.2 sequence-type=CDS polypeptide=Glyma.02g309100.2.p locus=Glyma.02g309100 ID=Glyma.02g309100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCATGCAGTTACCGGAGAGACACCTTGTGGGCACAACTTGTGTTTGAGATGTTTCGAGAAGTGGGTCGGACAGGGGAAGCGCACCTGTGCCAATTGCCGTGCTCAAATCCCGGCGAAGATGGCGAGTCAGCCGAGGATCAACTCTCAGCTGGCAATGGCCATCCGATTGGCGAAGGCGGCCAAGTCGGGAGAAGGGTCCTCGGGCCCACCCAAGGTGTACCACTTTGTCCGCAACCAGGACCGCCCCGATACCGCATTCACCACAGAGCGAGCCAAGAAGACTGGGAAAGCCAATGCTTGCAGTGGTAAGATTTTTGTGACTGTTCCTCCTGACCATTTTGGTCCCATCCCGTCTGAAAACGACCCCATCAGGAACCGCGGTGTTCTTGTTGGTGACACGTGGGAGGACAGGATGGAGTGTCGCCAGTGGGGTGCTCATTTGCCTCATGTTGCCGGCATTGCTGGACAGAGTGGCTATGGTTCCCAGTCTGTTGCCCTTTCTGGTGGTTACGAGGATGACGAGGATCACGGTGAGTGGTTCCTTTACACTGGCAGTGGTGGCAGAGATCTCAGTGGTAACAAACGAACCAACAAGCTTCAATCCTTTGACCAGAAGTTTGAAAACATGAACGAGGCCTTGAGAGTCAGCTGCAGGAAGGGTTATCCCGTTCGGGTTGTAAGGTCGCACAAGGAAAAGCGTTCTTCTTATGCACCGGAGTCTGGAGTGCGTTACGATGGAGTTTATAGAATAGAGAAATGCTGGCGCAAAAATGGAACACAAGGTTGCAAGGTTTGTAGGTATTTGTTTGTGAGATGTGACAATGAGCCAGCACCCTGGACAAGTGATGAAATTGGAGATCGCCCACGCCCACTGCCTAAAATTGATGAGTTGAAGGGTGCGGTTGATATAACTGAAAGGAAGGGTGATCCATCGTGGGATTTTGATGAGGAAAAGGGGTCCTGGTTGTGGAAGAAGCCTCCACCAGAAAGCAAGAAATCAGTGGACATTAAAGCTGAAGATGGAACAACAATCAGAGTTAAACGGAAAGCAAAAAATGTGTCCGTGAAAGAAAGGCTATTGAAAGAGTTTGGTTGCCAAATATGTCGCAAGGCGATGGCTTCCCCTCTTACTACACCTTGTGCTCACAACTTCTGCAAAGCCTGTTTGGAGGGTGCCTTTTCTGGCCAAAGTTTCATCAGAAATAGGGCATGTGGAGGTGGACGCACTTTACGAGCGCAGAAGAATTTTATGAAATGCCCATCATGTTCAACTGACATTGCTGACTTTCTCCAGAATCCACAGGTTAATAGAGAAATGCTGGCTGTTATAGAATCACTACAACGCCAGGCTGAAGATGAAAATTCTGAAGAGTCAAGTGATAAAAATGATGAAAATCTGCATGACCCAACTGAGGTTTCTAAACCTTGTGATTCTAGTGATAAGGTCCTGGAGGAAATTAAGGACAATGAGCTGAATCAGCCACACAAGCGAAGGAAAGAGTGA

Predicted protein sequences of Glyma.02g309100

Limit To All Plant Sequences

>Glyma.02g309100.1.p sequence-type=predicted peptide transcript=Glyma.02g309100.1 locus=Glyma.02g309100 ID=Glyma.02g309100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAQLPCDSDGVCMLCKQKPSPSQTLSCRTCATPWHLSCLPSAPLSLSDSHWDCPDCSDTSNHYPVAPTADLVSAVHAIQADTSLTDQEKAKKRQELLAGSSDSSKDKAKTKDIFDGSLNCSICMQLPERPVTTPCGHNLCLRCFEKWVGQGKRTCANCRAQIPAKMASQPRINSQLAMAIRLAKAAKSGEGSSGPPKVYHFVRNQDRPDTAFTTERAKKTGKANACSGKIFVTVPPDHFGPIPSENDPIRNRGVLVGDTWEDRMECRQWGAHLPHVAGIAGQSGYGSQSVALSGGYEDDEDHGEWFLYTGSGGRDLSGNKRTNKLQSFDQKFENMNEALRVSCRKGYPVRVVRSHKEKRSSYAPESGVRYDGVYRIEKCWRKNGTQGCKVCRYLFVRCDNEPAPWTSDEIGDRPRPLPKIDELKGAVDITERKGDPSWDFDEEKGSWLWKKPPPESKKSVDIKAEDGTTIRVKRKAKNVSVKERLLKEFGCQICRKAMASPLTTPCAHNFCKACLEGAFSGQSFIRNRACGGGRTLRAQKNFMKCPSCSTDIADFLQNPQVNREMLAVIESLQRQAEDENSEESSDKNDENLHDPTEVSKPCDSSDKVLEEIKDNELNQPHKRRKE*

>Glyma.02g309100.2.p sequence-type=predicted peptide transcript=Glyma.02g309100.2 locus=Glyma.02g309100 ID=Glyma.02g309100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MHAVTGETPCGHNLCLRCFEKWVGQGKRTCANCRAQIPAKMASQPRINSQLAMAIRLAKAAKSGEGSSGPPKVYHFVRNQDRPDTAFTTERAKKTGKANACSGKIFVTVPPDHFGPIPSENDPIRNRGVLVGDTWEDRMECRQWGAHLPHVAGIAGQSGYGSQSVALSGGYEDDEDHGEWFLYTGSGGRDLSGNKRTNKLQSFDQKFENMNEALRVSCRKGYPVRVVRSHKEKRSSYAPESGVRYDGVYRIEKCWRKNGTQGCKVCRYLFVRCDNEPAPWTSDEIGDRPRPLPKIDELKGAVDITERKGDPSWDFDEEKGSWLWKKPPPESKKSVDIKAEDGTTIRVKRKAKNVSVKERLLKEFGCQICRKAMASPLTTPCAHNFCKACLEGAFSGQSFIRNRACGGGRTLRAQKNFMKCPSCSTDIADFLQNPQVNREMLAVIESLQRQAEDENSEESSDKNDENLHDPTEVSKPCDSSDKVLEEIKDNELNQPHKRRKE*

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