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Report for Sequence Feature Glyma.02g305200

Feature Type:gene_model
Chromosome:Gm02
Start:48008920
stop:48016163
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g305200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G05120.1AT Nucleoporin, Nup133/Nup155-like JGI N/AIEA
GO:0000972GO-bp transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery EnsemblGenomesN/AIEA
GO:0006325GO-bp chromatin organization EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006405GO-bp RNA export from nucleus EnsemblGenomesN/AIEA
GO:0006606GO-bp protein import into nucleus EnsemblGenomesN/AIEA
GO:0031081GO-bp nuclear pore distribution EnsemblGenomesN/AIEA
GO:0000777GO-cc condensed chromosome kinetochore EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0031080GO-cc nuclear pore outer ring EnsemblGenomesN/AIEA
GO:0017056GO-mf structural constituent of nuclear pore EnsemblGenomesN/AIEA
PTHR13405Panther FAMILY NOT NAMED JGI N/AIEA
PTHR13405:SF4Panther JGI N/AIEA
PF03177PFAM Non-repetitive/WGA-negative nucleoporin C-terminal JGI N/AIEA
PF08801PFAM Nup133 N terminal like JGI N/AIEA

Expression Patterns of Glyma.02g305200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g305200
ParalogEvidenceComments
Glyma.14g008200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g305200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g47530 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g305200
>Glyma.02g305200.1 sequence-type=CDS polypeptide=Glyma.02g305200.1.p locus=Glyma.02g305200 ID=Glyma.02g305200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTTTCTTGCGGAACGAAGAAGAGCAATGTTCGCTCTCGCAGAGAGCAAGGTCGCGATTCCACGGTGGTAGATTCTCCGGTCACTCCTGCTCGAACCTCTTTCCACGATAACGCCGTTCCCAATCGCCCGACCACCGGCACTCCCGTTCCTTGGGCTCCCCGCTTATCCGTTCTTGCCAGGGTTCCTCAGGTCAACAGAACTGGAAAAGGCGACGACACAGATCCTACCAAACCTGTTTTCGTCGGCGAGTTTCCGCAAGTGGTTCGTGATGAGCAGAGCATTTTGCTACACAATCGAATTCCTGCTGAAGATCGCGTGTGTGGTGGAATTGACAAGAGCACATCCCTTGCTTGGATTATTTGTGGGAACAGGGTCTACCTATGGTGTTATTTGTCGCCCGCATCCTCCGTGAAATGTGCTGTCCTCGAGATTCCTTTGAATGATGCTGATGTTGGCAGAAATCATGCTGGTAGTTGGTTGCTTTGTGTTGTTAATTGTGATGCCACGTCTGTGGGAACGAATAAAGTTGCAAAACAGTGCAACTCTGCTGCTGTGGTTTTGTGCAATTGTCGGACTCGGGCTGTTATATACTGGCCGGACATCTATTCTCAGTTGCATGCTCCGGTCACTAGTCTTGTGTCTTCTGACGAGCTGGAGGCTGTTTTGACTCCTGATAGGAAAGCGTCCTTCAACAGGCAGCGGCGACAAAGTAAGCTGGGAAGTAGTTTGAGTGGATTGCACACATTTAACTCTATGATTGCTTCTGCTGATCCCAGTTGTAAGTTTGTATGTGTTGCCCTTGCGTGCAGCTCGAGTGATGAACTTTGGCAGTTTAAATGCACTCCTACTGGCATTCATCGAAGGAAAGTATATGAAAATATTATGCATTTCCCACTCCAACAGGGTGAATCAGGTCAAATTGTGAGCAATATTGGGTACCCTAGATCTCTGATGTGGCATTTTCCTCATTATTCTATCCAGGAATCAAGTCGGCAATTCTTGGTATTGACAGACCATGAGATACAGTGTTTCAGAGTAGAGTTTGGTTCTGATATACCTATTTCAAAGCTTTGGTCTCAGGCAATTGTTGGAACAGATGCTGAGGTCGGCATTAAGAAGGATCTGGCTGGTCAAAAGAGAATCTGGCCTCTTGATATGCAAGTAGATGATCATGGTAAAGTCATTACCATTCTTGTTGCAACCTTTTGCAATGACCGGATTAGCAGTTCAAGCTACATGCAGTATTCTCTCCTGATCATGCAATATAAATCAGGGATGGGTTTAGAGACTACAAATGACAGGGTTTTGGAGAAAAAAGCCCCTATTGAGGTGATAATGCCAAAAGCTAGAGTTGAAGACGAAGACTTCTTGTTTTCCATGAGGCTTCGGATAGGGGGCAAGCCTTCAGGATCTGCAGTCATAATATCTGGGGATGGAACAGCAACTGTCTCCCATTATTATAGAAACTCTACACAACTCTATCAGTTTGATTTACCCTATGATGCTGGGAAAGTGCTAGATGCTTCTATCCTTCCTTCTGCAGATGATTATGAAGAAGGTGCATGGGTTGTATTAACAGAGAAAGCAGGAATATGGGCAATACCAGAGAAAGCTGTCATACTTGGAGGAGTGGAACCACCTGAGAGAAGCTTATCTCGTAAAGGCAGTTCAAATGAAAGATCTGCACAAGAAGAGATAAGAAATCTTACATTTGCAGGTAATTTTGCTCCTAGAAGGGCTAGCTCTGAAGCATGGAGTGCTGGAGACAAACAGAGGATGGTTTTGAGTGGGATTGCACGTCGAACTGCACTAGATGAAGAATCAGAAGCTTTATTGAATAATCTTTTCAATGAATTTTTAACATCTGGCCAAATTGACAGGTCTCTTGAAAAGCTAGAAACTTCTGGTTCATTTGAAAGGGATGGGGAAACCAATGTTTTTGTTCGGATGAGCAAATCAATTATAGACACCTTAGCTAAACATTGGACAACAACCAGAGGTGTAGAGATTTTGGCCATGGCTGTTGTTTCAACCCAACTCTTAGAAAAGCAACAGAAACATAAAAAGTTCCTTCACTTTCTTGCCTTATCCAAATGCCACGAGGAGCTGTGTTCTAAGCAGAGACATGCATTGCAAATTATTTTGGAGCATGGTGAAAAGTTATCTGCAATGATTCAGCTGAGGGAACTGCAAAATCTGATTAGCCAAAATCGATCAACTAATGTTGACTCCTCAAATTCTAGCTTGGATATTCAGACGTCAGGTGCTCTTTGGGACATGATACAATTAGTTGGTGAGAGAGCTCGTCGGAATACTGTCCTTTTGATGGATAGAGATAATGCTGAAGTGTTCTACAGTAAGGTTTCAGATCTTGAAGATCTCTTTTACTGCTTAGATGCAGAGTTAGAATATGTTATAAGACCAGAGCATCCATTAGGAATCCAGATTCAGAGGGCATGCAAACTCTCTACTGCATGTGTTACCATAATTAGGACATGCTTCAACTATAAAAATGAGAACCGATTATGGTATCCACCACCTGAAGGTTTAACACCTTGGTATTGCAAACCTGTTGTACGGACTGGTATTTGGAGTGTTGCTTCTGTCCTGCTTCACTTGTTAAATGAAATATCTGGACTTGATAAAACAGCAAAATTAGATCTGTACAATCATTTAGAAGCCCTAGCTGAAGTTCTACTTGAGGCATATTCTGGTGCTGTTACAGCTAAAAATGAGTGTGGAGAAGAACACAAAGGTCTGTTAAATGAATATTGGGAGAGGCGAGATAGCCTTCTTGAATCTCTCTATCAAAAAGTTAAAGAATTTGAAGATACTCGCAAGGATTCGATTGAAGGAGCTGGAGAGCAGAATGAAGAGGCCTTAATGAAGGTTACTTCACATCTGTTATCAATTGCTAAACGACATGGATGCTACAAAGTTATGTGGACAATTTGTTGTGATGTGAATGACTCAGAATTACTGAGAAATATTATGCATGAAAGCCTGGGACCTAATGGGGGATTTAGTTACTATGTCTTTAAGAAACTCCATGAAAGCAGACAATTTTCTCAACTTTTAAGGTTAGGGGAAGAATTTCCTGATGAGCTATCCATTTTCCTGAGGGAGCATCCAGATCTTCTTTGGCTTCATGATTTGTTCCTTCATCAATTTTCCTCTGCTTCAGAAACACTTCATGCATTGGCTCTCTTACAAAACATGCAATCTACTTCTGTTGCTGAAGAGGAAGGAGAACAGGAGTATATGAAGATGAAACTAAAATTGACTGACAGAAAAAATCTTTTATTTCTCTCTAAGGTTGCTGCCTTTGCAGCTGGTAACGAAGCTGGTACTCAAGTCAAGGTGGACCGCATTGAGGCTGATTTGAAGATTCTAAAATTACAGGAGGAAGTAATGAAACGTCATCCTTCCATTGAAGATCAGCTGCTTCATCCTGAAGACTTGATTAAATTGTGCCTGGAAGGTGAAGATCGAGAACTCTCGTTGTGGGCGTTTGACGTGTTTGCATGGACTAGTTCCCTGTTTCGGAAGATCCACAGAAAACTTTTGGAGGATTGTTGGAAGAAAGCTGCTAGTCAGGACGATTGGAGTAAATTCCATGATTCATACATAGCTGAAGGATGGAGTGACCAGGAAATCCTGCAAAACTTAAAAAATACTATACTTTTCCAGGCTTCAAGTAGGTGTTATGGACCTCAAAGTGAAACATTTGAAGAAGGGTTTGGCCAAGTATTTTCCTTGAGACAAGAAAACATGGAGACTTCTATTTTGGGGGATATGGGTAGTTCAGTTGAAACAATATTGATGCAGCACAAGGATTTTCCAGTTGCAGGCAAACTTATGCTAATGGCAATCATGCTAGGCAGCGAGCATAGTAGTGACATCAGAATTGAAGAAGGACCTTCCCCAATGGAATAG
Predicted protein sequences of Glyma.02g305200
>Glyma.02g305200.1.p sequence-type=predicted peptide transcript=Glyma.02g305200.1 locus=Glyma.02g305200 ID=Glyma.02g305200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFSCGTKKSNVRSRREQGRDSTVVDSPVTPARTSFHDNAVPNRPTTGTPVPWAPRLSVLARVPQVNRTGKGDDTDPTKPVFVGEFPQVVRDEQSILLHNRIPAEDRVCGGIDKSTSLAWIICGNRVYLWCYLSPASSVKCAVLEIPLNDADVGRNHAGSWLLCVVNCDATSVGTNKVAKQCNSAAVVLCNCRTRAVIYWPDIYSQLHAPVTSLVSSDELEAVLTPDRKASFNRQRRQSKLGSSLSGLHTFNSMIASADPSCKFVCVALACSSSDELWQFKCTPTGIHRRKVYENIMHFPLQQGESGQIVSNIGYPRSLMWHFPHYSIQESSRQFLVLTDHEIQCFRVEFGSDIPISKLWSQAIVGTDAEVGIKKDLAGQKRIWPLDMQVDDHGKVITILVATFCNDRISSSSYMQYSLLIMQYKSGMGLETTNDRVLEKKAPIEVIMPKARVEDEDFLFSMRLRIGGKPSGSAVIISGDGTATVSHYYRNSTQLYQFDLPYDAGKVLDASILPSADDYEEGAWVVLTEKAGIWAIPEKAVILGGVEPPERSLSRKGSSNERSAQEEIRNLTFAGNFAPRRASSEAWSAGDKQRMVLSGIARRTALDEESEALLNNLFNEFLTSGQIDRSLEKLETSGSFERDGETNVFVRMSKSIIDTLAKHWTTTRGVEILAMAVVSTQLLEKQQKHKKFLHFLALSKCHEELCSKQRHALQIILEHGEKLSAMIQLRELQNLISQNRSTNVDSSNSSLDIQTSGALWDMIQLVGERARRNTVLLMDRDNAEVFYSKVSDLEDLFYCLDAELEYVIRPEHPLGIQIQRACKLSTACVTIIRTCFNYKNENRLWYPPPEGLTPWYCKPVVRTGIWSVASVLLHLLNEISGLDKTAKLDLYNHLEALAEVLLEAYSGAVTAKNECGEEHKGLLNEYWERRDSLLESLYQKVKEFEDTRKDSIEGAGEQNEEALMKVTSHLLSIAKRHGCYKVMWTICCDVNDSELLRNIMHESLGPNGGFSYYVFKKLHESRQFSQLLRLGEEFPDELSIFLREHPDLLWLHDLFLHQFSSASETLHALALLQNMQSTSVAEEEGEQEYMKMKLKLTDRKNLLFLSKVAAFAAGNEAGTQVKVDRIEADLKILKLQEEVMKRHPSIEDQLLHPEDLIKLCLEGEDRELSLWAFDVFAWTSSLFRKIHRKLLEDCWKKAASQDDWSKFHDSYIAEGWSDQEILQNLKNTILFQASSRCYGPQSETFEEGFGQVFSLRQENMETSILGDMGSSVETILMQHKDFPVAGKLMLMAIMLGSEHSSDIRIEEGPSPME*






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