Glyma.02g305000

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.02g305000

Feature Type:	gene_model
Chromosome:	Gm02
Start:	47994943
stop:	47998270
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.02g305000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G05250.1	AT	DNAJ heat shock N-terminal domain-containing protein	JGI	N/A	IEA
PTHR25040	Panther	FAMILY NOT NAMED	JGI	N/A	IEA
PTHR25040:SF41	Panther		JGI	N/A	IEA
PF00226	PFAM	DnaJ domain	JGI	N/A	IEA
PF11926	PFAM	Domain of unknown function (DUF3444)	JGI	N/A	IEA

Expression Patterns of Glyma.02g305000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.02g305000

Paralog	Evidence	Comments
Glyma.14g008900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g305000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma02g47510	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.02g305000

Limit To All Plant Sequences

>Glyma.02g305000.2 sequence-type=transcript locus=Glyma.02g305000 ID=Glyma.02g305000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATCATCATTTTATTTATAATAATTCCTATTTTTATTTTGGTGCCTTCTCTTTCTGATCGGCGATTGTCGGAAGCTCCTATTCATCGCCGCCACCTTGCTCCGAATCGGACCCACTTCGGATCCGAGAGCCACCCGAATCCTTTGTTCCCAGCTTTTGTTTTTCTATAACAAAGCCTTCACCTTTACCATTTACCACACACACACCACTCTGTCCATACAAATCGGGTTCTGTGTTTTCCTGTTTTTAGCGAAGCGAGATTCACACCTAATTTTGCTTCATCTCGTAACTACACGTGGCGATCTGGCTCTTCTTCAACACCCCATTATCGTCTCCAATCTCACAGACATGTAAACGAGGTTATATATGATATTGGAAAAGATGTTGGGCTGGGCGTAGTTTCTGTTTCAAGAGTTCAGTTGTGAAGTGATTTTTTGTTCCTACATGGAAGCAAACAAGGAGGAAGCACTTAAAGCGATAGAGATTGCTGAAAAGCGATTTGCTCTGAGAGACTTTGCCGGTGCAAAAAACTATGCTGTAAAGGCTAAAACACTCTGTCCAGGATTGGAGGGTATATCTCAAATGGTGGCCACATTTGAAGTTTACGTTGCTTCTGAGGTCAAACATAATGGTGATCTAGATTACTATTCGATTCTTGGATTAAAACCTTTTGCAGATAAGGAGGCTGTGAAGAAACAGTACAAGAAGTTGGCAGTGTTGCTTCACCCAGATAAGAACAAATGTGTGGGAGCTGATGAGGCATTTAAGCTTGTTTCTGAGGCTTGGACTTGGCTATCAGATAGTGCTATGCGCAGTTCTTATGATCTCAAGAGAAATGTGCAGCTGGGTGGGGCTAACCAGACAAATTTGTCTCCTGCCCATGCTACAGGGACTGCAGGTTATACCAAATGTTCCAATTTGCCAACCCCTTGTGGTAGGCTTGACACCTTTTGGACAATCTGCACCTCTTGTAAGGTTCAGTATGAGTATCTGCGCAAGTATGTGAATAAAAGACTCTCTTGTAAGAACTGTCGTGGCACTTTTGTTGCTGTTGAAACTGGGGCGGCCCCAGCAAATGGTTCGTTTCCATATTGTCCTTGGTCATATGTGGCAGGAAATGGGTATGGAAGTCATTCATTTGATGGAGTTACATATGTTCCAACTAGTGCCCCCTATTTCAATGGGAATGGGGTCACAGGGTACCATTCTGGACATGGTTATGAGTACGTTCCAAATGTTTCATTTCAGTGGGGCTCTGCTGGAGTTGTCAACCAAAATGGATCAACTACCTTACCTGCTGATTCTGTTCATCGGGCCAATGGAAATGTGAAGAGGGGAAGGCCAAAAGTCAAGTTGGGAGCTGATAAGAGGCATCACGTGATAGAGACTATGGTCAATACAAATTCAGATGTACCATTCTCCTGTAGTGAACCACAGGAAGATAAACTAAGTAGACCTGACAAGAAACAGAAAGTTGTTGTGGGAGCCAGTTTCAGAAATGGCTATGAAGAAAAGGGTTCAAAATGTGCTTCAGAGTTGATAGTGGCTAACGGAAATGATAGCATGGGACATGGCCAAAAGCCTTCCTGCACAGTCGAAGTTCAAACCAAACAGTGTTCCATGGCACCAGCATTTGACGCAAGAAAATTATTGATTGAGAAAGCCAGGAAAGAAATCAGGAAGAAACTGGAGGAGATGAAGTTGTCGTCTGCAGCAGCAGCTGCTGCAGCTCTGAATGAGAAAGAAAAATCACAAGCTGAAGTTGGTAAAGTAAAAAGAGAGACATGTAGAAAAGCAGCTCCGAATGTTTCTGGTCTACAATTAGAGAATGGGAAAACTGGTCCAGTCTCAATTACTGTCCCAGATTCTGACTTTCATGACTTTGACAAAGATAGGTCAGAGGAATGCTTCAGGCCAAAGCAAATATGGGCCTTGTATGATGAGGAAGATGGAATGCCACGGTTGTATTGTATGATCCGTGAGGTTGTGTCTGTCAATCCATTTAAGATTCACATCAGTTACTTGAGTTCCAAAACTGATAGTGAGTTTGGCTCAGTAAACTGGCTTGATTCAGGTTTTACCAAATCTTGTGGAAATTTCAGGGCTTTCAATTCAGATGCTGTTGATCAAGTTAACATATTTTCTCATGTTCTAAATAAGGAGAAGGCTGGTCGAGGTGGTTGTGTCCGAATATATCCTAGAAGTGGAGATATTTGGGCTGTGTATCGAAATTGGTCGCCAGATTGGAGCAGATCTACTCCAGATGAAGTGAGGCATCAGTATGAAATGGTTGAGGTGCTGGATGATTACTCTGAGGAACTTGGTGTTTGTGTTAGTCCTCTTATTAAGTTGGCTGGATTTAAAACGGTATATCAGAGTAATACAGACAAGAGTACCATAAAATGGATACCCAGAAGAGAGATGTTGCGCTTTTCACATCAAGTGCCTTCTTGGTTACTGAAGGGGGAAGCTAGCAATTTGCCTGAAAGGTGTTGGGACCTTGATCCGGCTGCAACTCCAGATGAGCTTCTTCATGCTGCTACAGAACCAAATGCTTTGTAG

Coding sequences of Glyma.02g305000

Limit To All Plant Sequences

>Glyma.02g305000.1 sequence-type=CDS polypeptide=Glyma.02g305000.1.p locus=Glyma.02g305000 ID=Glyma.02g305000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGCAAACAAGGAGGAAGCACTTAAAGCGATAGAGATTGCTGAAAAGCGATTTGCTCTGAGAGACTTTGCCGGTGCAAAAAACTATGCTGTAAAGGCTAAAACACTCTGTCCAGGATTGGAGGGTATATCTCAAATGGTGGCCACATTTGAAGTTTACGTTGCTTCTGAGGTCAAACATAATGGTGATCTAGATTACTATTCGATTCTTGGATTAAAACCTTTTGCAGATAAGGAGGCTGTGAAGAAACAGTACAAGAAGTTGGCAGTGTTGCTTCACCCAGATAAGAACAAATGTGTGGGAGCTGATGAGGCATTTAAGCTTGTTTCTGAGGCTTGGACTTGGCTATCAGATAGTGCTATGCGCAGTTCTTATGATCTCAAGAGAAATGTGCAGCTGGGTGGGGCTAACCAGACAAATTTGTCTCCTGCCCATGCTACAGGGACTGCAGGTTATACCAAATGTTCCAATTTGCCAACCCCTTGTGGTAGGCTTGACACCTTTTGGACAATCTGCACCTCTTGTAAGGTTCAGTATGAGTATCTGCGCAAGTATGTGAATAAAAGACTCTCTTGTAAGAACTGTCGTGGCACTTTTGTTGCTGTTGAAACTGGGGCGGCCCCAGCAAATGGTTCGTTTCCATATTGTCCTTGGTCATATGTGGCAGGAAATGGGTATGGAAGTCATTCATTTGATGGAGTTACATATGTTCCAACTAGTGCCCCCTATTTCAATGGGAATGGGGTCACAGGGTACCATTCTGGACATGGTTATGAGTACGTTCCAAATGTTTCATTTCAGTGGGGCTCTGCTGGAGTTGTCAACCAAAATGGATCAACTACCTTACCTGCTGATTCTGTTCATCGGGCCAATGGAAATGTGAAGAGGGGAAGGCCAAAAGTCAAGTTGGGAGCTGATAAGAGGCATCACGTGATAGAGACTATGGTCAATACAAATTCAGATGTACCATTCTCCTGTAGTGAACCACAGGAAGATAAACTAAGTAGACCTGACAAGAAACAGAAAGTTGTTGTGGGAGCCAGTTTCAGAAATGGCTATGAAGAAAAGGGTTCAAAATGTGCTTCAGAGTTGATAGTGGCTAACGGAAATGATAGCATGGGACATGGCCAAAAGCCTTCCTGCACAGTCGAAGTTCAAACCAAACAGTGTTCCATGGCACCAGCATTTGACGCAAGAAAATTATTGATTGAGAAAGCCAGGAAAGAAATCAGGAAGAAACTGGAGGAGATGAAGTTGTCGTCTGCAGCAGCAGCTGCTGCAGCTCTGAATGAGAAAGAAAAATCACAAGCTGAAGTTGGTAAAGTAAAAAGAGAGACATGTAGAAAAGCAGCTCCGAATGTTTCTGGTCTACAATTAGAGAATGGGAAAACTGGTCCAGTCTCAATTACTGTCCCAGATTCTGACTTTCATGACTTTGACAAAGATAGGTCAGAGGAATGCTTCAGGCCAAAGCAAATATGGGCCTTGTATGATGAGGAAGATGGAATGCCACGGTTGTATTGTATGATCCGTGAGGTTGTGTCTGTCAATCCATTTAAGATTCACATCAGTTACTTGAGTTCCAAAACTGATAGTGAGTTTGGCTCAGTAAACTGGCTTGATTCAGGTTTTACCAAATCTTGTGGAAATTTCAGGGCTTTCAATTCAGATGCTGTTGATCAAGTTAACATATTTTCTCATGTTCTAAATAAGGAGAAGGCTGGTCGAGGTGGTTGTGTCCGAATATATCCTAGAAGTGGAGATATTTGGGCTGTGTATCGAAATTGGTCGCCAGATTGGAGCAGATCTACTCCAGATGAAGTGAGGCATCAGTATGAAATGGTTGAGGTGCTGGATGATTACTCTGAGGAACTTGGTGTTTGTGTTAGTCCTCTTATTAAGTTGGCTGGATTTAAAACGGTATATCAGAGTAATACAGACAAGAGTACCATAAAATGGATACCCAGAAGAGAGATGTTGCGCTTTTCACATCAAGTGCCTTCTTGGTTACTGAAGGGGGAAGCTAGCAATTTGCCTGAAAGGTGTTGGGACCTTGATCCGGCTGCAACTCCAGATGAGCTTCTTCATGCTGCTACAGAACCAAATGCTTTGTAG

>Glyma.02g305000.2 sequence-type=CDS polypeptide=Glyma.02g305000.2.p locus=Glyma.02g305000 ID=Glyma.02g305000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGCAAACAAGGAGGAAGCACTTAAAGCGATAGAGATTGCTGAAAAGCGATTTGCTCTGAGAGACTTTGCCGGTGCAAAAAACTATGCTGTAAAGGCTAAAACACTCTGTCCAGGATTGGAGGGTATATCTCAAATGGTGGCCACATTTGAAGTTTACGTTGCTTCTGAGGTCAAACATAATGGTGATCTAGATTACTATTCGATTCTTGGATTAAAACCTTTTGCAGATAAGGAGGCTGTGAAGAAACAGTACAAGAAGTTGGCAGTGTTGCTTCACCCAGATAAGAACAAATGTGTGGGAGCTGATGAGGCATTTAAGCTTGTTTCTGAGGCTTGGACTTGGCTATCAGATAGTGCTATGCGCAGTTCTTATGATCTCAAGAGAAATGTGCAGCTGGGTGGGGCTAACCAGACAAATTTGTCTCCTGCCCATGCTACAGGGACTGCAGGTTATACCAAATGTTCCAATTTGCCAACCCCTTGTGGTAGGCTTGACACCTTTTGGACAATCTGCACCTCTTGTAAGGTTCAGTATGAGTATCTGCGCAAGTATGTGAATAAAAGACTCTCTTGTAAGAACTGTCGTGGCACTTTTGTTGCTGTTGAAACTGGGGCGGCCCCAGCAAATGGTTCGTTTCCATATTGTCCTTGGTCATATGTGGCAGGAAATGGGTATGGAAGTCATTCATTTGATGGAGTTACATATGTTCCAACTAGTGCCCCCTATTTCAATGGGAATGGGGTCACAGGGTACCATTCTGGACATGGTTATGAGTACGTTCCAAATGTTTCATTTCAGTGGGGCTCTGCTGGAGTTGTCAACCAAAATGGATCAACTACCTTACCTGCTGATTCTGTTCATCGGGCCAATGGAAATGTGAAGAGGGGAAGGCCAAAAGTCAAGTTGGGAGCTGATAAGAGGCATCACGTGATAGAGACTATGGTCAATACAAATTCAGATGTACCATTCTCCTGTAGTGAACCACAGGAAGATAAACTAAGTAGACCTGACAAGAAACAGAAAGTTGTTGTGGGAGCCAGTTTCAGAAATGGCTATGAAGAAAAGGGTTCAAAATGTGCTTCAGAGTTGATAGTGGCTAACGGAAATGATAGCATGGGACATGGCCAAAAGCCTTCCTGCACAGTCGAAGTTCAAACCAAACAGTGTTCCATGGCACCAGCATTTGACGCAAGAAAATTATTGATTGAGAAAGCCAGGAAAGAAATCAGGAAGAAACTGGAGGAGATGAAGTTGTCGTCTGCAGCAGCAGCTGCTGCAGCTCTGAATGAGAAAGAAAAATCACAAGCTGAAGTTGGTAAAGTAAAAAGAGAGACATGTAGAAAAGCAGCTCCGAATGTTTCTGGTCTACAATTAGAGAATGGGAAAACTGGTCCAGTCTCAATTACTGTCCCAGATTCTGACTTTCATGACTTTGACAAAGATAGGTCAGAGGAATGCTTCAGGCCAAAGCAAATATGGGCCTTGTATGATGAGGAAGATGGAATGCCACGGTTGTATTGTATGATCCGTGAGGTTGTGTCTGTCAATCCATTTAAGATTCACATCAGTTACTTGAGTTCCAAAACTGATAGTGAGTTTGGCTCAGTAAACTGGCTTGATTCAGGTTTTACCAAATCTTGTGGAAATTTCAGGGCTTTCAATTCAGATGCTGTTGATCAAGTTAACATATTTTCTCATGTTCTAAATAAGGAGAAGGCTGGTCGAGGTGGTTGTGTCCGAATATATCCTAGAAGTGGAGATATTTGGGCTGTGTATCGAAATTGGTCGCCAGATTGGAGCAGATCTACTCCAGATGAAGTGAGGCATCAGTATGAAATGGTTGAGGTGCTGGATGATTACTCTGAGGAACTTGGTGTTTGTGTTAGTCCTCTTATTAAGTTGGCTGGATTTAAAACGGTATATCAGAGTAATACAGACAAGAGTACCATAAAATGGATACCCAGAAGAGAGATGTTGCGCTTTTCACATCAAGTGCCTTCTTGGTTACTGAAGGGGGAAGCTAGCAATTTGCCTGAAAGGTGTTGGGACCTTGATCCGGCTGCAACTCCAGATGAGCTTCTTCATGCTGCTACAGAACCAAATGCTTTGTAG

Predicted protein sequences of Glyma.02g305000

Limit To All Plant Sequences

>Glyma.02g305000.1.p sequence-type=predicted peptide transcript=Glyma.02g305000.1 locus=Glyma.02g305000 ID=Glyma.02g305000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEANKEEALKAIEIAEKRFALRDFAGAKNYAVKAKTLCPGLEGISQMVATFEVYVASEVKHNGDLDYYSILGLKPFADKEAVKKQYKKLAVLLHPDKNKCVGADEAFKLVSEAWTWLSDSAMRSSYDLKRNVQLGGANQTNLSPAHATGTAGYTKCSNLPTPCGRLDTFWTICTSCKVQYEYLRKYVNKRLSCKNCRGTFVAVETGAAPANGSFPYCPWSYVAGNGYGSHSFDGVTYVPTSAPYFNGNGVTGYHSGHGYEYVPNVSFQWGSAGVVNQNGSTTLPADSVHRANGNVKRGRPKVKLGADKRHHVIETMVNTNSDVPFSCSEPQEDKLSRPDKKQKVVVGASFRNGYEEKGSKCASELIVANGNDSMGHGQKPSCTVEVQTKQCSMAPAFDARKLLIEKARKEIRKKLEEMKLSSAAAAAAALNEKEKSQAEVGKVKRETCRKAAPNVSGLQLENGKTGPVSITVPDSDFHDFDKDRSEECFRPKQIWALYDEEDGMPRLYCMIREVVSVNPFKIHISYLSSKTDSEFGSVNWLDSGFTKSCGNFRAFNSDAVDQVNIFSHVLNKEKAGRGGCVRIYPRSGDIWAVYRNWSPDWSRSTPDEVRHQYEMVEVLDDYSEELGVCVSPLIKLAGFKTVYQSNTDKSTIKWIPRREMLRFSHQVPSWLLKGEASNLPERCWDLDPAATPDELLHAATEPNAL*

>Glyma.02g305000.2.p sequence-type=predicted peptide transcript=Glyma.02g305000.2 locus=Glyma.02g305000 ID=Glyma.02g305000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEANKEEALKAIEIAEKRFALRDFAGAKNYAVKAKTLCPGLEGISQMVATFEVYVASEVKHNGDLDYYSILGLKPFADKEAVKKQYKKLAVLLHPDKNKCVGADEAFKLVSEAWTWLSDSAMRSSYDLKRNVQLGGANQTNLSPAHATGTAGYTKCSNLPTPCGRLDTFWTICTSCKVQYEYLRKYVNKRLSCKNCRGTFVAVETGAAPANGSFPYCPWSYVAGNGYGSHSFDGVTYVPTSAPYFNGNGVTGYHSGHGYEYVPNVSFQWGSAGVVNQNGSTTLPADSVHRANGNVKRGRPKVKLGADKRHHVIETMVNTNSDVPFSCSEPQEDKLSRPDKKQKVVVGASFRNGYEEKGSKCASELIVANGNDSMGHGQKPSCTVEVQTKQCSMAPAFDARKLLIEKARKEIRKKLEEMKLSSAAAAAAALNEKEKSQAEVGKVKRETCRKAAPNVSGLQLENGKTGPVSITVPDSDFHDFDKDRSEECFRPKQIWALYDEEDGMPRLYCMIREVVSVNPFKIHISYLSSKTDSEFGSVNWLDSGFTKSCGNFRAFNSDAVDQVNIFSHVLNKEKAGRGGCVRIYPRSGDIWAVYRNWSPDWSRSTPDEVRHQYEMVEVLDDYSEELGVCVSPLIKLAGFKTVYQSNTDKSTIKWIPRREMLRFSHQVPSWLLKGEASNLPERCWDLDPAATPDELLHAATEPNAL*

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