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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G48300.1 | AT | ADP glucose pyrophosphorylase 1 | JGI | N/A | IEA |
| GO:0005978 | GO-bp | glycogen biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009058 | GO-bp | biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009058 | GO-bp | biosynthetic process | JGI | N/A | IEA |
| GO:0019252 | GO-bp | starch biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009507 | GO-cc | chloroplast | EnsemblGenomes | N/A | IEA |
| GO:0009536 | GO-cc | plastid | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0008878 | GO-mf | glucose-1-phosphate adenylyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016779 | GO-mf | nucleotidyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016779 | GO-mf | nucleotidyltransferase activity | JGI | N/A | IEA |
| KOG1322 | KOG | GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase | JGI | N/A | IEA |
| PTHR22572 | Panther | SUGAR-1-PHOSPHATE GUANYL TRANSFERASE | JGI | N/A | IEA |
| PTHR22572:SF10 | Panther | GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 2, CHLOROPLASTIC-RELATED | JGI | N/A | IEA |
| PF00483 | PFAM | Nucleotidyl transferase | JGI | N/A | IEA |
| PWY-622 | SoyCyc9 | starch biosynthesis | Plant Metabolic Network | ISS | |
| PWYQT-4466 | SoyCyc9 | superpathway of sucrose and starch metabolism I (non-photosynthetic tissue) | Plant Metabolic Network | ISS | |
| GN7V-67643 | SoyCyc9-rxn | glucose-1-phosphate adenylyltransferase | Plant Metabolic Network | ISS |
|
Glyma.02g304500 not represented in the dataset |
Glyma.02g304500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.14g009300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma02g47460 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.02g304500.2 sequence-type=transcript locus=Glyma.02g304500 ID=Glyma.02g304500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATCTGAAGTGTCGCACTGTGAGCCAAGTGACAGTCTGAACGAGTAATGGCATCCATGGCGGCTATAGGTTCTCTGAATGTTCCTTGTTCTGCTTCTTCGCGTTCATCGAATGTGGGAAGAAAAAGCTTTCCACGCAGCCTTTCATTCTCTGCATCACAACTTTGTGGAGACAAGATTCACACAGATTCAGTTTCATTCGCACCAAAAATCGGTCGCAATCCTGTAATTGTTACCCCTAAAGCAGTTTCTGATTCCCAAAACTCCCAAACCTGTCTTGATCCCGATGCTAGCAGAagtgtgcttgGCATTATACTTGGAGGTGGTGCTGGGACTCGTCTTTATCCACTGACCAAGAAGAGGGCAAAGCCAGCTGTTCCTCTTGGAGCTAACTATAGGCTAATTGACATTCCTGTTAGCAACTGCTTGAATAGCAACGTCTCCAAGATCTATGTTCTCACTCAATTCAATTCCGCCTCGTTAAACCGACACCTTTCTCGTGCTTATGCAAGCAACATGGGTGGCTACAAAAATGAGGGATTTGTTGAGGTTCTTGCTGCTCAGCAGAGTCCTGAGAATCCTAATTGGTTCCAGGGTACTGCAGATGCTGTCAGGCAGTATTTGTGGCTTTTTGAAGAGCACAATGTTTTGGAATTCTTGGTTCTGGCTGGTGACCATTTGTATCGAATGGATTACGAGAAATTTATCCAAGCGCATAGGGAAACTGATGCTGATATCACTGTGGCTGCATTGCCAATGGATGAAAAGCGTGCCACTGCATTTGGCCTGATGAAGATTGATGAAGAGGGGCGTATAATTGAATTCGCCGAAAAGCCAAAAGGAGAACAGTTGAAAGCTATGAAGGTTGATACTACAATTTTGGGTCTTGATGACGAGAGAGCAAAGGAATTGCCTTATATTGCTAGCATGGGTATATATGTTGTTAGCAAAAACGTGATGTTAGACCTGCTCCGTGAGAAGTTTCCTGGTGCAAATGACTTTGGGAGTGAAGTGATTCCTGGTGCTACTTCTATTGGAATGAGGGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGTTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCCCTCTAAGATGCTTGATGCTGATGTCACTGATAGTGTTATTGGTGAAGGATGTGTGATTAAGAACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAGACGGAGGCTGATAAGAGGTTTCTGGCTGCTAAAGGCAGTGTTCCAATTGGTATAGGCAGGAACTCTCATATCAAAAGGGCAATTATCGACAAGAATGCTCGAATTGGGGAAAATGTCAAGATTATTAACAGTGACAATGTCCAAGAAGCTGCAAGGGAAACAGATGGGTATTTCATAAAAAGTGGGATTGTCACAGTAATCAAGGATGCTTTAATTCCTAGTGGAACAGTCATCTAAACACCACCACCACCCCAAAAAATTTCTTGTACCCCAAATCCTAATGGTGACTGCAAAGCTCATTACCACCGCTGGAGAGTTTATCAAGCTATGCTTCCTCGTCTAAGATAGGCTTTTGTGTTTCATGATATTTATTTTTGGGCAGTGGCTTGTAAATTATAGCGGGAGAGAAGGCCCGCTATGAGCAATCACGCTGTAAAGTTCATTATTCAATTGAATAAAAGTTTCTTCGTTTCGTACTAATTACAA
>Glyma.02g304500.1 sequence-type=CDS polypeptide=Glyma.02g304500.1.p locus=Glyma.02g304500 ID=Glyma.02g304500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCATCCATGGCGGCTATAGGTTCTCTGAATGTTCCTTGTTCTGCTTCTTCGCGTTCATCGAATGTGGGAAGAAAAAGCTTTCCACGCAGCCTTTCATTCTCTGCATCACAACTTTGTGGAGACAAGATTCACACAGATTCAGTTTCATTCGCACCAAAAATCGGTCGCAATCCTGTAATTGTTACCCCTAAAGCAGTTTCTGATTCCCAAAACTCCCAAACCTGTCTTGATCCCGATGCTAGCAGAAGTGTGCTTGGCATTATACTTGGAGGTGGTGCTGGGACTCGTCTTTATCCACTGACCAAGAAGAGGGCAAAGCCAGCTGTTCCTCTTGGAGCTAACTATAGGCTAATTGACATTCCTGTTAGCAACTGCTTGAATAGCAACGTCTCCAAGATCTATGTTCTCACTCAATTCAATTCCGCCTCGTTAAACCGACACCTTTCTCGTGCTTATGCAAGCAACATGGGTGGCTACAAAAATGAGGGATTTGTTGAGGTTCTTGCTGCTCAGCAGAGTCCTGAGAATCCTAATTGGTTCCAGGGTACTGCAGATGCTGTCAGGCAGTATTTGTGGCTTTTTGAAGAGCACAATGTTTTGGAATTCTTGGTTCTGGCTGGTGACCATTTGTATCGAATGGATTACGAGAAATTTATCCAAGCGCATAGGGAAACTGATGCTGATATCACTGTGGCTGCATTGCCAATGGATGAAAAGCGTGCCACTGCATTTGGCCTGATGAAGATTGATGAAGAGGGGCGTATAATTGAATTCGCCGAAAAGCCAAAAGGAGAACAGTTGAAAGCTATGAAGGTTGATACTACAATTTTGGGTCTTGATGACGAGAGAGCAAAGGAATTGCCTTATATTGCTAGCATGGGTATATATGTTGTTAGCAAAAACGTGATGTTAGACCTGCTCCGTGAGAAGTTTCCTGGTGCAAATGACTTTGGGAGTGAAGTGATTCCTGGTGCTACTTCTATTGGAATGAGGGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGTTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCCCTCTAAGATGCTTGATGCTGATGTCACTGATAGTGTTATTGGTGAAGGATGTGTGATTAAGAACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAGACGGAGGCTGATAAGAGGTTTCTGGCTGCTAAAGGCAGTGTTCCAATTGGTATAGGCAGGAACTCTCATATCAAAAGGGCAATTATCGACAAGAATGCTCGAATTGGGGAAAATGTCAAGATTATTAACAGTGACAATGTCCAAGAAGCTGCAAGGGAAACAGATGGGTATTTCATAAAAAGTGGGATTGTCACAGTAATCAAGGATGCTTTAATTCCTAGTGGAACAGTCATCTAA >Glyma.02g304500.2 sequence-type=CDS polypeptide=Glyma.02g304500.2.p locus=Glyma.02g304500 ID=Glyma.02g304500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCATCCATGGCGGCTATAGGTTCTCTGAATGTTCCTTGTTCTGCTTCTTCGCGTTCATCGAATGTGGGAAGAAAAAGCTTTCCACGCAGCCTTTCATTCTCTGCATCACAACTTTGTGGAGACAAGATTCACACAGATTCAGTTTCATTCGCACCAAAAATCGGTCGCAATCCTGTAATTGTTACCCCTAAAGCAGTTTCTGATTCCCAAAACTCCCAAACCTGTCTTGATCCCGATGCTAGCAGAAGTGTGCTTGGCATTATACTTGGAGGTGGTGCTGGGACTCGTCTTTATCCACTGACCAAGAAGAGGGCAAAGCCAGCTGTTCCTCTTGGAGCTAACTATAGGCTAATTGACATTCCTGTTAGCAACTGCTTGAATAGCAACGTCTCCAAGATCTATGTTCTCACTCAATTCAATTCCGCCTCGTTAAACCGACACCTTTCTCGTGCTTATGCAAGCAACATGGGTGGCTACAAAAATGAGGGATTTGTTGAGGTTCTTGCTGCTCAGCAGAGTCCTGAGAATCCTAATTGGTTCCAGGGTACTGCAGATGCTGTCAGGCAGTATTTGTGGCTTTTTGAAGAGCACAATGTTTTGGAATTCTTGGTTCTGGCTGGTGACCATTTGTATCGAATGGATTACGAGAAATTTATCCAAGCGCATAGGGAAACTGATGCTGATATCACTGTGGCTGCATTGCCAATGGATGAAAAGCGTGCCACTGCATTTGGCCTGATGAAGATTGATGAAGAGGGGCGTATAATTGAATTCGCCGAAAAGCCAAAAGGAGAACAGTTGAAAGCTATGAAGGTTGATACTACAATTTTGGGTCTTGATGACGAGAGAGCAAAGGAATTGCCTTATATTGCTAGCATGGGTATATATGTTGTTAGCAAAAACGTGATGTTAGACCTGCTCCGTGAGAAGTTTCCTGGTGCAAATGACTTTGGGAGTGAAGTGATTCCTGGTGCTACTTCTATTGGAATGAGGGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGTTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCCCTCTAAGATGCTTGATGCTGATGTCACTGATAGTGTTATTGGTGAAGGATGTGTGATTAAGAACTGCAAAATTCACCATTCTGTGGTTGGGCTGCGATCTTGCATATCAGAAGGTGCAATTATTGAAGACACGTTATTAATGGGGGCAGATTATTACGAGACGGAGGCTGATAAGAGGTTTCTGGCTGCTAAAGGCAGTGTTCCAATTGGTATAGGCAGGAACTCTCATATCAAAAGGGCAATTATCGACAAGAATGCTCGAATTGGGGAAAATGTCAAGATTATTAACAGTGACAATGTCCAAGAAGCTGCAAGGGAAACAGATGGGTATTTCATAAAAAGTGGGATTGTCACAGTAATCAAGGATGCTTTAATTCCTAGTGGAACAGTCATCTAA
>Glyma.02g304500.1.p sequence-type=predicted peptide transcript=Glyma.02g304500.1 locus=Glyma.02g304500 ID=Glyma.02g304500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASMAAIGSLNVPCSASSRSSNVGRKSFPRSLSFSASQLCGDKIHTDSVSFAPKIGRNPVIVTPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNVSKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTILGLDDERAKELPYIASMGIYVVSKNVMLDLLREKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETEADKRFLAAKGSVPIGIGRNSHIKRAIIDKNARIGENVKIINSDNVQEAARETDGYFIKSGIVTVIKDALIPSGTVI* >Glyma.02g304500.2.p sequence-type=predicted peptide transcript=Glyma.02g304500.2 locus=Glyma.02g304500 ID=Glyma.02g304500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASMAAIGSLNVPCSASSRSSNVGRKSFPRSLSFSASQLCGDKIHTDSVSFAPKIGRNPVIVTPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNVSKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTILGLDDERAKELPYIASMGIYVVSKNVMLDLLREKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETEADKRFLAAKGSVPIGIGRNSHIKRAIIDKNARIGENVKIINSDNVQEAARETDGYFIKSGIVTVIKDALIPSGTVI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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