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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G29560.1 | AT | cytosolic enolase | JGI | N/A | IEA |
| GO:0006096 | GO-bp | glycolytic process | EnsemblGenomes | N/A | IEA |
| GO:0006096 | GO-bp | glycolysis | JGI | N/A | IEA |
| GO:0000015 | GO-cc | phosphopyruvate hydratase complex | EnsemblGenomes | N/A | IEA |
| GO:0000015 | GO-cc | phosphopyruvate hydratase complex | JGI | N/A | IEA |
| GO:0000287 | GO-mf | magnesium ion binding | EnsemblGenomes | N/A | IEA |
| GO:0000287 | GO-mf | magnesium ion binding | JGI | N/A | IEA |
| GO:0004634 | GO-mf | phosphopyruvate hydratase activity | EnsemblGenomes | N/A | IEA |
| GO:0004634 | GO-mf | phosphopyruvate hydratase activity | JGI | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| KOG2670 | KOG | Enolase | JGI | N/A | IEA |
| PTHR11902 | Panther | ENOLASE | JGI | N/A | IEA |
| PF00113 | PFAM | Enolase, C-terminal TIM barrel domain | JGI | N/A | IEA |
| PF03952 | PFAM | Enolase, N-terminal domain | JGI | N/A | IEA |
| GLUCONEO-PWY | SoyCyc9 | gluconeogenesis I | Plant Metabolic Network | ISS | |
| GLYCOLYSIS | SoyCyc9 | glycolysis I (from glucose 6-phosphate) | Plant Metabolic Network | ISS | |
| PWY-1042 | SoyCyc9 | glycolysis IV (plant cytosol) | Plant Metabolic Network | ISS | |
| PWY-5464 | SoyCyc9 | superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle | Plant Metabolic Network | ISS | |
| PWY-5484 | SoyCyc9 | glycolysis II (from fructose 6-phosphate) | Plant Metabolic Network | ISS | |
| PWY-5723 | SoyCyc9 | Rubisco shunt | Plant Metabolic Network | ISS | |
| PWY-7345 | SoyCyc9 | superpathway of anaerobic sucrose degradation | Plant Metabolic Network | ISS | |
| GN7V-49637 | SoyCyc9-rxn | phosphopyruvate hydratase | Plant Metabolic Network | ISS |
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Glyma.02g304200 not represented in the dataset |
Glyma.02g304200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.14g009600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma02g47430 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.02g304200.1 sequence-type=CDS polypeptide=Glyma.02g304200.1.p locus=Glyma.02g304200 ID=Glyma.02g304200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCAGTGCAAGATTACCTGGATAAGCACATGCTTTCCCGAAAACTCGAAGATGCCGTCAATGCCGCCGTTAGGGCCAAAACCTCCGATCCCGTTCTCTTCATCTCGAATCACATGCGAAAAGCAGTGCAATCGGTGATAACAAAAATCAAGGCGAGGCAGATCCTAGATAGCAGAGGAATTCCAACCGTCGAAGTCGACTTGCACACTAACAAAGGCGTGTTCCGCGCTTCCGTTCCCAGCGGCAACTCCACCAGCATGTATGAAGCTGTTGAGTTACGCGACGGTGACAAAGGAGTGTATCTCGGAAATGGCGTGGCCAAAGCTGTTAAAAATATCAATGACAAGATATCTGAGGCGTTGATTGGTATGGATCCTACGCTTCAGTCGCAGATTGATCAGGCCATGATTGACCTCGACAAAACTGAGAAGAAGGGGGAACTTGGAGCCAATGCTATATTAGCTGTGTCCATTGCTGCCTGTAAAGCTGGTGCTGCAGAAAAGGAGGTTCCACTTTACAAGCACATTGCTGACCTGTCTGGAAAAACCAGCCCAACACTTCCTGTTCCTGCCTTTACTGTCATAAGTGGTGGAAAACATGCTGGGAGTAATCTGGCCATTCAGGAAATCATGATTCTCCCAATTGGAGCAAGCAAATTTGAGGAAGCATTGCGAATGGGCACTGAGACCTATCATCACTTAAAGGCTGTCATTACAGAAAAATATGGTGCACATAACTGTAATGTGGGTGAAGATGGTGGCTTTGCTCCTAATATATCCAGCTTTAGAGAAGCCCTGGATCTTGTGAAGGAGGCCATTAGCAGAGCTGGTTATGATGAGAAAATAAAGATAGCTCTTGATGTTGCTGCTACAGATTTTTGCATAGGTAAAAGATATGATCTGGACTTTCAATCTCCTCAAAAGTCTGGACAGAATTTTAAGTCAGCAGAGGATATGATAGACTTGTACAAGGAACTATGCTCTGAATACCCTATTGTGTCAATAGAAGATCCATTTGACAAGGAAGATTGGGAACATATCAAGCATATCTCAAGTCTGGGGATTTGTCAGGTAGTTGGGGATGATCTCTTGATGTCAAATGCAAAACGCATTGAGAGAGCAATAACTGAGTCTGCTTGTAATGCCCTTCTTCTGAAGGTCAACCAAGTTGGAACTATTACAGAGGTCATTGAAGTGGTGAAGCTGGCAAAAGAAGCACATTGGGGGGTGGTAACGTCTCATAGATGTGGAGAAACTATAGACTCTTTCATTGCTGATTTATCTGTTGGCCTTGCTTCTGGTGTAATTAAAGCAGGAGCTCCTTGCAGAGGAGAGCGGCTAGAAAAGTACAACCAGTTACTTCGGATTGAGGAGGAGCTCGGAGATCAAGCAGTTTATGCCGGTGAAGATTGGAGGCAATAA
>Glyma.02g304200.1.p sequence-type=predicted peptide transcript=Glyma.02g304200.1 locus=Glyma.02g304200 ID=Glyma.02g304200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSVQDYLDKHMLSRKLEDAVNAAVRAKTSDPVLFISNHMRKAVQSVITKIKARQILDSRGIPTVEVDLHTNKGVFRASVPSGNSTSMYEAVELRDGDKGVYLGNGVAKAVKNINDKISEALIGMDPTLQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLSGKTSPTLPVPAFTVISGGKHAGSNLAIQEIMILPIGASKFEEALRMGTETYHHLKAVITEKYGAHNCNVGEDGGFAPNISSFREALDLVKEAISRAGYDEKIKIALDVAATDFCIGKRYDLDFQSPQKSGQNFKSAEDMIDLYKELCSEYPIVSIEDPFDKEDWEHIKHISSLGICQVVGDDLLMSNAKRIERAITESACNALLLKVNQVGTITEVIEVVKLAKEAHWGVVTSHRCGETIDSFIADLSVGLASGVIKAGAPCRGERLEKYNQLLRIEEELGDQAVYAGEDWRQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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