SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.02g301000

Feature Type:gene_model
Chromosome:Gm02
Start:49527127
stop:49534182
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.02g301000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G13180.1AT JGI N/AIEA
2.1.1.176EC 16S rRNA (cytosine967-C5)-methyltransferase JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0032259GO-bp methylation JGI N/AIEA
GO:0003723GO-mf RNA binding JGI N/AIEA
GO:0008168GO-mf methyltransferase activity JGI N/AIEA
K03500KEGG Ribosome biogenesis JGI N/AIEA
KOG1122 KOG tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) JGI N/AIEA
PTHR22807PantherFam NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING JGI N/AIEA
PTHR22807:SF30PantherFam 28S RRNA (CYTOSINE(4447)-C(5))-METHYLTRANSFERASE-RELATED JGI N/AIEA
PF01029Pfam NusB family JGI N/AIEA
PF01728Pfam FtsJ-like methyltransferase JGI N/AIEA

Gene model name correspondences to Glyma.02g301000 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g47060 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g301000
>Glyma.02g301000.1 sequence-type=CDS polypeptide=Glyma.02g301000.1.p locus=Glyma.02g301000 id=Glyma.02g301000.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGGCGCGGGTGCTGTATATGGGTTTACCTTTCCCCGCAGAACCCCAGAAAACTGCACCTTCTTCTTCTTCTTCTTCTTCTCCCTCGAAGCCATTGAAGCTTCCCCATAGAACCTGCAGCACCAACATATCCATTCCCAGCACTGCCAAAGGCGGTGGCAATCGTTTGCTGAAAACCCAGAAGCTGAATTCAGAGGTTTCTCCTCACAGAGCTGTGTCAGCGGTGAGATTGATGCGGATTGAGCTTGGTGGTGCTTTTGCTGACCTTCTCAACGAGAAAGGGAAAGGTTCTGGTGAAAACGAGATGGGATATGTTCAAAGAACGCTTGGCTTTCGCACTCGGGAATTGAATCACCATGATCTTAGATTGGTCACAGACATTGTTGGGGGTACGATTCGCTGGAGAAGATATCTTGATCATCTTATCAGTTCACTATGTCATGATAAAGATATATCTAGCATGGAACCTCTTCTCTTACAGATTCTAAGAATTGGCTTCTATGAGATTGTCAAATTAGATATGCCACCTTATGCTGTCGTTGATGAGAACGTGAAGCTTGCTAAATTTGCTCTCAGACCTGGGGCTGGCAACATGGTCAATGGAATTCTCCGAAAGCTAGTTGTGCTGAAGGAGAAGGAAAGTCTTCCTTTGCCCAAAGTGGAGGGTGATGACCGTGCTCAAGCACGTGCTTTGGCAACTCTGTACTCACATCCAGTTTGGATGGTAAGGAGATGGACAAAGTATCTTGGCCAGGAAGAAGCCATTAAATTGATGATATGGAACAACAGTGAACCCAGTTTCAGCTTAAGAGCAAACCGTGCAAGAGGTTTTTCAAGAGATGACCTTGTGACACAGCTTAATGCATTGAAGGTCCCACACAAACTTTCACCGCATTTGGATGAATTTGTTCGTATCAAAACTGGGTTGCAGATTATTATTCAAGCTGGTCTTCTCAAAAAGGGTTTATGTTCAGTTCAGGATGAGAGTGCAGGTCTGGTAGTTTCTGTTGTGGATCCTCAACCTGGTGAAACTATCATTGATTGCTGTGCTGCTCCTGGTGGAAAGACCCTCTACATGGCCTCTCATTTAAGTGGCCAAGGTAAGGTATTTGCAATTGATGTAAATAGTGGTAGGTTGAGAATTCTTAAAGAGACAGCAAAGTTGCACCAAGTGGATGGTGTCATTACTGCCATCCATGCTGATCTTCGTACATTACCTGATAGTGGACAGCTTAAGAGTAACAAAGTTTTGTTGGACGCTCCATGCTCTGGACTTGGTGTTCTTTCCAAGAGAGCGGACTTGCGTTGGAACAAGAATCTGGAGGATATGGAACAACTGAAGGAATTACAGGATGAGCTCCTGGATGCAGCATCCAAATTGGTAAAACCTGGGGGAGTATTAGTTTACAGTACATGCTCCATAGATCCTGAAGAGAATGACGACAGGGTAGTGGCATTTCTTGCAAGACATTCGGATTTCCACATTGATCCAGTAGACAGATATGTTCCTCCTGATTTTGAGACAAGCAGTGGTTTCTTTTTCTCCAACCCAGTTAAACATTCACTAGATGGCTCCTTTGCAGCTCGTTTAGTACGTGATTTATAG
Predicted protein sequences of Glyma.02g301000
>Glyma.02g301000.1.p sequence-type=predicted peptide transcript=Glyma.02g301000.1 locus=Glyma.02g301000 id=Glyma.02g301000.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MARVLYMGLPFPAEPQKTAPSSSSSSSPSKPLKLPHRTCSTNISIPSTAKGGGNRLLKTQKLNSEVSPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELNHHDLRLVTDIVGGTIRWRRYLDHLISSLCHDKDISSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVKLAKFALRPGAGNMVNGILRKLVVLKEKESLPLPKVEGDDRAQARALATLYSHPVWMVRRWTKYLGQEEAIKLMIWNNSEPSFSLRANRARGFSRDDLVTQLNALKVPHKLSPHLDEFVRIKTGLQIIIQAGLLKKGLCSVQDESAGLVVSVVDPQPGETIIDCCAAPGGKTLYMASHLSGQGKVFAIDVNSGRLRILKETAKLHQVDGVITAIHADLRTLPDSGQLKSNKVLLDAPCSGLGVLSKRADLRWNKNLEDMEQLKELQDELLDAASKLVKPGGVLVYSTCSIDPEENDDRVVAFLARHSDFHIDPVDRYVPPDFETSSGFFFSNPVKHSLDGSFAARLVRDL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo