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A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT5G40580.1 | AT | 20S proteasome beta subunit PBB2 | JGI | N/A | IEA |
GO:0006508 | GO-bp | proteolysis | EnsemblGenomes | N/A | IEA |
GO:0051603 | GO-bp | proteolysis involved in cellular protein catabolic process | EnsemblGenomes | N/A | IEA |
GO:0051603 | GO-bp | proteolysis involved in cellular protein catabolic process | JGI | N/A | IEA |
GO:0000502 | GO-cc | proteasome complex | EnsemblGenomes | N/A | IEA |
GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
GO:0005839 | GO-cc | proteasome core complex | EnsemblGenomes | N/A | IEA |
GO:0005839 | GO-cc | proteasome core complex | JGI | N/A | IEA |
GO:0004175 | GO-mf | endopeptidase activity | EnsemblGenomes | N/A | IEA |
GO:0004298 | GO-mf | threonine-type endopeptidase activity | EnsemblGenomes | N/A | IEA |
GO:0004298 | GO-mf | threonine-type endopeptidase activity | JGI | N/A | IEA |
GO:0008233 | GO-mf | peptidase activity | EnsemblGenomes | N/A | IEA |
GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
KOG0173 | KOG | 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 | JGI | N/A | IEA |
KOG0177 | KOG | 20S proteasome, regulatory subunit beta type PSMB2/PRE1 | JGI | N/A | IEA |
PTHR11599 | Panther | PROTEASOME SUBUNIT ALPHA/BETA | JGI | N/A | IEA |
PTHR11599:SF1 | Panther | JGI | N/A | IEA | |
PF00227 | PFAM | Proteasome subunit | JGI | N/A | IEA |
Glyma.02g299000 not represented in the dataset |
Glyma.02g299000 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.14g014800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma02g46860 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.02g299000.2 sequence-type=transcript locus=Glyma.02g299000 ID=Glyma.02g299000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 CTTCAAGCAATTGAGGATTCACAAATGATAATCATCTCTACTGACCAAATCTGAAGAAAATTGCTTTCTCTTTGGTTCCTAGCTCGCACTCTCTCTACGCACGCCTCAACATCCCTTCTCTGCTCCATTCATTATGTCTCCGTCGTTGGATCTTCCCCCCAAGGGTGGCTTCAGTTTTGATCTATGCCGAAGAAACGCAATGCTTCAAAACAAGGGCCTCAAAGCCCCAACCTTTCTCAAAACTGGCACCACTATTGTCGGTTTAGTTTTCCAGGATGGTGTCATTCTTGGGGCTGATACTAGGGCAACTGAAGGACCTATAGTGGCTGATAAAAACTGTGAGAAAATTCATTATATGGCACCCAACATATATTGCTGTGGAGCAGGCACAGCTGCTGATACAGAGGCTGTAACAGACATGGTTAGCTCACAGCTGCAACTACATCGCTACCATACTGGTCGGGAATCAAGAGTTGTTACGGCACTGACTCTTCTTAAGAAACACCTGTTCAATTATCAAGGGCATGTCTCAGCTGCTTTAGTTCTTGGTGGGGTTGATATCACTGGACCTCATTTGCATACTATTTATCCTCATGGGTCAACTGACACCCTCCCATTTGCTACAATGGGATCAGGTTCACTTGCTGCAATGTCTGTATTTGAGTCTAAGTACAAGGAAAGTTTGAGTAGGGATGAAGGCATTAAGCTAGTTGTTGAGGCGATATGTGCTGGTATATTTAATGACCTAGGAAGTGGAAGTAATGTTGATGTTTGTGTGATAACCAAGGGACATAAGGAATATCTCAGGAACCACCTTCTACCAAATCCTCGTACCTATGTCAATCCAAAAGGCTTTGATTTCCCCAAAAAGACAGAGGTCCTCTTAACAAAGATTACACCGTTGAAGGAGAAGGTGGAAGTGATTGAAGGAGATGCTATGGAAGAGTAACAATCATTCCAAAAAAAATTGGTGTATGAGTATGAAACTTGATTAGTGCAATGGCTGTGATATTTGATTTTGTACTTTCACAACTTTGGCTTTTATTACCAAAATTTATTTGAATTCAATTAGATCATTGCAAATTGTTCCTCAAATTTCTTCATTTGGTTGGATTTTGGCTAGAAAATGCTTAACAAAACACCAAATATATACAATTTGATTGATGAAAGATGTTACTTGTTTTGTTTTTT >Glyma.02g299000.3 sequence-type=transcript locus=Glyma.02g299000 ID=Glyma.02g299000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 CTTCAAGCAATTGAGGATTCACAAATGATAATCATCTCTACTGACCAAATCTGAAGAAAATTGCTTTCTCTTTGGTTCCTAGCTCGCACTCTCTCTACGCACGCCTCAACATCCCTTCTCTGCTCCATTCATTATGTCTCCGTCGTTGGATCTTCCCCCCAAGGGTGGCTTCAGTTTTGATCTATGCCGAAGAAACGCAATGCTTCAAAACAAGGGCCTCAAAGCCCCAACCTTTCTCAAAACTGGCACCACTATTGTCGGTTTAGTTTTCCAGGATGGTGTCATTCTTGGGGCTGATACTAGGGCAACTGAAGGACCTATAGTGGCTGATAAAAACTGTGAGAAAATTCATTATATGGCACCCAACATATATTGCTGTGGAGCAGGCACAGCTGCTGATACAGAGGCTGTAACAGACATGGTTAGCTCACAGCTGCAACTACATCGCTACCATACTGGTCGGGAATCAAGAGTTGTTACGGCACTGACTCTTCTTAAGAAACACCTGTTCAATTATCAAGGGCATGTCTCAGCTGCTTTAGTTCTTGGTGGGGTTGATATCACTGGACCTCATTTGCATACTATTTATCCTCATGGGTCAACTGACACCCTCCCATTTGCTACAATGGGATCAGGTTCACTTGCTGCAATGTCTGTATTTGAGTCTAAGTACAAGGAAAGTTTGAGTGTAAAGGGATGAAGGCATTAAGCTAGTTGTTGAGGCGATATGTGCTGGTATATTTAATGACCTAGGAAGTGGAAGTAATGTTGATGTTTGTGTGATAACCAAGGGACATAAGGAATATCTCAGGAACCACCTTCTACCAAATCCTCGTACCTATGTCAATCCAAAAGGCTTTGATTTCCCCAAAAAGACAGAGGTCCTCTTAACAAAGATTACACCGTTGAAGGAGAAGGTGGAAGTGATTGAAGGAGATGCTATGGAAGAGTAACAATCATTCCAAAAAAAATTGGTGTATGAGTATGAAACTTGATTAGTGCAATGGCTGTGATATTTGATTTTGTACTTTCACAACTTTGGCTTTTATTACCAAAATTTATTTGAATTCAATTAGATCATTGCAAATTGTTCCTCAAATTTCTTCATTTGGTTGGATTTTGGCTAGAAAATGCTTAACAAAACACCAAATATATACAATTTGATTGATGAAAGATGTTACTTGTTTTGTTTTTT >Glyma.02g299000.4 sequence-type=transcript locus=Glyma.02g299000 ID=Glyma.02g299000.4.Wm82.a2.v1 annot-version=Wm82.a2.v1 CTTCAAGCAATTGAGGATTCACAAATGATAATCATCTCTACTGACCAAATCTGAAGAAAATTGCTTTCTCTTTGGTTCCTAGCTCGCACTCTCTCTACGCACGCCTCAACATCCCTTCTCTGCTCCATTCATTATGTCTCCGTCGTTGGATCTTCCCCCCAAGGGTGGCTTCAGTTTTGATCTATGCCGAAGAAACGCAATGCTTCAAAACAAGGGCCTCAAAGCCCCAACCTTTCTCAAAACTGGCACCACTATTGTCGGTTTAGTTTTCCAGGATGGTGTCATTCTTGGGGCTGATACTAGGGCAACTGAAGGACCTATAGTGGCTGATAAAAACTGTGAGAAAATTCATTATATGGCACCCAACATATATTGCTGTGGAGCAGGCACAGCTGCTGATACAGAGGCTGTAACAGACATGGTTAGCTCACAGCTGCAACTACATCGCTACCATACTGGTCGGGAATCAAGAGTTGTTACGGCACTGACTCTTCTTAAGAAACACCTGTTCAATTATCAAGGGCATGTCTCAGCTGCTTTAGTTCTTGGTGGGGTTGATATCACTGGACCTCATTTGCATACTATTTATCCTCATGGGTCAACTGACACCCTCCCATTTGCTACAATGGGATCAGGTTCACTTGCTGCAATGTCTGTATTTGAGTCTAAGTACAAGGAAAGTTTGAGTGTAAGTAAGCATACAAGGCTCACAGCCTTAGAGGAGTGCATTTGATACATTGTTGTTAAATGGAG
>Glyma.02g299000.1 sequence-type=CDS polypeptide=Glyma.02g299000.1.p locus=Glyma.02g299000 ID=Glyma.02g299000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCTCCGTCGTTGGATCTTCCCCCCAAGGGTGGCTTCAGTTTTGATCTATGCCGAAGAAACGCAATGCTTCAAAACAAGGGCCTCAAAGCCCCAACCTTTCTCAAAACTGGCACCACTATTGTCGGTTTAGTTTTCCAGGATGGTGTCATTCTTGGGGCTGATACTAGGGCAACTGAAGGACCTATAGTGGCTGATAAAAACTGTGAGAAAATTCATTATATGGCACCCAACATATATTGCTGTGGAGCAGGCACAGCTGCTGATACAGAGGCTGTAACAGACATGGTTAGCTCACAGCTGCAACTACATCGCTACCATACTGGTCGGGAATCAAGAGTTGTTACGGCACTGACTCTTCTTAAGAAACACCTGTTCAATTATCAAGGGCATGTCTCAGCTGCTTTAGTTCTTGGTGGGGTTGATATCACTGGACCTCATTTGCATACTATTTATCCTCATGGGTCAACTGACACCCTCCCATTTGCTACAATGGGATCAGGTTCACTTGCTGCAATGTCTGTATTTGAGTCTAAGTACAAGGAAAGTTTGAGTAGGGATGAAGGCATTAAGCTAGTTGTTGAGGCGATATGTGCTGGTATATTTAATGACCTAGGAAGTGGAAGTAATGTTGATGTTTGTGTGATAACCAAGGGACATAAGGAATATCTCAGGAACCACCTTCTACCAAATCCTCGTACCTATGTCAATCCAAAAGGCTTTGATTTCCCCAAAAAGACAGAGGTCCTCTTAACAAAGATTACACCGTTGAAGGAGAAGGTGGAAGTGATTGAAGGAGATGCTATGGAAGAGTAA >Glyma.02g299000.2 sequence-type=CDS polypeptide=Glyma.02g299000.2.p locus=Glyma.02g299000 ID=Glyma.02g299000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCTCCGTCGTTGGATCTTCCCCCCAAGGGTGGCTTCAGTTTTGATCTATGCCGAAGAAACGCAATGCTTCAAAACAAGGGCCTCAAAGCCCCAACCTTTCTCAAAACTGGCACCACTATTGTCGGTTTAGTTTTCCAGGATGGTGTCATTCTTGGGGCTGATACTAGGGCAACTGAAGGACCTATAGTGGCTGATAAAAACTGTGAGAAAATTCATTATATGGCACCCAACATATATTGCTGTGGAGCAGGCACAGCTGCTGATACAGAGGCTGTAACAGACATGGTTAGCTCACAGCTGCAACTACATCGCTACCATACTGGTCGGGAATCAAGAGTTGTTACGGCACTGACTCTTCTTAAGAAACACCTGTTCAATTATCAAGGGCATGTCTCAGCTGCTTTAGTTCTTGGTGGGGTTGATATCACTGGACCTCATTTGCATACTATTTATCCTCATGGGTCAACTGACACCCTCCCATTTGCTACAATGGGATCAGGTTCACTTGCTGCAATGTCTGTATTTGAGTCTAAGTACAAGGAAAGTTTGAGTAGGGATGAAGGCATTAAGCTAGTTGTTGAGGCGATATGTGCTGGTATATTTAATGACCTAGGAAGTGGAAGTAATGTTGATGTTTGTGTGATAACCAAGGGACATAAGGAATATCTCAGGAACCACCTTCTACCAAATCCTCGTACCTATGTCAATCCAAAAGGCTTTGATTTCCCCAAAAAGACAGAGGTCCTCTTAACAAAGATTACACCGTTGAAGGAGAAGGTGGAAGTGATTGAAGGAGATGCTATGGAAGAGTAA >Glyma.02g299000.3 sequence-type=CDS polypeptide=Glyma.02g299000.3.p locus=Glyma.02g299000 ID=Glyma.02g299000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCTCCGTCGTTGGATCTTCCCCCCAAGGGTGGCTTCAGTTTTGATCTATGCCGAAGAAACGCAATGCTTCAAAACAAGGGCCTCAAAGCCCCAACCTTTCTCAAAACTGGCACCACTATTGTCGGTTTAGTTTTCCAGGATGGTGTCATTCTTGGGGCTGATACTAGGGCAACTGAAGGACCTATAGTGGCTGATAAAAACTGTGAGAAAATTCATTATATGGCACCCAACATATATTGCTGTGGAGCAGGCACAGCTGCTGATACAGAGGCTGTAACAGACATGGTTAGCTCACAGCTGCAACTACATCGCTACCATACTGGTCGGGAATCAAGAGTTGTTACGGCACTGACTCTTCTTAAGAAACACCTGTTCAATTATCAAGGGCATGTCTCAGCTGCTTTAGTTCTTGGTGGGGTTGATATCACTGGACCTCATTTGCATACTATTTATCCTCATGGGTCAACTGACACCCTCCCATTTGCTACAATGGGATCAGGTTCACTTGCTGCAATGTCTGTATTTGAGTCTAAGTACAAGGAAAGTTTGAGTGTAAAGGGATGA >Glyma.02g299000.4 sequence-type=CDS polypeptide=Glyma.02g299000.4.p locus=Glyma.02g299000 ID=Glyma.02g299000.4.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCTCCGTCGTTGGATCTTCCCCCCAAGGGTGGCTTCAGTTTTGATCTATGCCGAAGAAACGCAATGCTTCAAAACAAGGGCCTCAAAGCCCCAACCTTTCTCAAAACTGGCACCACTATTGTCGGTTTAGTTTTCCAGGATGGTGTCATTCTTGGGGCTGATACTAGGGCAACTGAAGGACCTATAGTGGCTGATAAAAACTGTGAGAAAATTCATTATATGGCACCCAACATATATTGCTGTGGAGCAGGCACAGCTGCTGATACAGAGGCTGTAACAGACATGGTTAGCTCACAGCTGCAACTACATCGCTACCATACTGGTCGGGAATCAAGAGTTGTTACGGCACTGACTCTTCTTAAGAAACACCTGTTCAATTATCAAGGGCATGTCTCAGCTGCTTTAGTTCTTGGTGGGGTTGATATCACTGGACCTCATTTGCATACTATTTATCCTCATGGGTCAACTGACACCCTCCCATTTGCTACAATGGGATCAGGTTCACTTGCTGCAATGTCTGTATTTGAGTCTAAGTACAAGGAAAGTTTGAGTGTAAGTAAGCATACAAGGCTCACAGCCTTAGAGGAGTGCATTTGA
>Glyma.02g299000.1.p sequence-type=predicted peptide transcript=Glyma.02g299000.1 locus=Glyma.02g299000 ID=Glyma.02g299000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSPSLDLPPKGGFSFDLCRRNAMLQNKGLKAPTFLKTGTTIVGLVFQDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFESKYKESLSRDEGIKLVVEAICAGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTYVNPKGFDFPKKTEVLLTKITPLKEKVEVIEGDAMEE* >Glyma.02g299000.2.p sequence-type=predicted peptide transcript=Glyma.02g299000.2 locus=Glyma.02g299000 ID=Glyma.02g299000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSPSLDLPPKGGFSFDLCRRNAMLQNKGLKAPTFLKTGTTIVGLVFQDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFESKYKESLSRDEGIKLVVEAICAGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTYVNPKGFDFPKKTEVLLTKITPLKEKVEVIEGDAMEE* >Glyma.02g299000.3.p sequence-type=predicted peptide transcript=Glyma.02g299000.3 locus=Glyma.02g299000 ID=Glyma.02g299000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSPSLDLPPKGGFSFDLCRRNAMLQNKGLKAPTFLKTGTTIVGLVFQDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFESKYKESLSVKG* >Glyma.02g299000.4.p sequence-type=predicted peptide transcript=Glyma.02g299000.4 locus=Glyma.02g299000 ID=Glyma.02g299000.4.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSPSLDLPPKGGFSFDLCRRNAMLQNKGLKAPTFLKTGTTIVGLVFQDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFESKYKESLSVSKHTRLTALEECI*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||