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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G55930.1 | AT | CBS domain-containing protein / transporter associated domain-containing protein | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0016614 | GO-mf | oxidoreductase activity, acting on CH-OH group of donors | EnsemblGenomes | N/A | IEA |
| GO:0030554 | GO-mf | adenyl nucleotide binding | JGI | N/A | IEA |
| GO:0050660 | GO-mf | flavin adenine dinucleotide binding | EnsemblGenomes | N/A | IEA |
| KOG2118 | KOG | Predicted membrane protein, contains two CBS domains | JGI | N/A | IEA |
| PTHR22777 | Panther | HEMOLYSIN-RELATED | JGI | N/A | IEA |
| PF00571 | PFAM | CBS domain | JGI | N/A | IEA |
| PF01595 | PFAM | Domain of unknown function DUF21 | JGI | N/A | IEA |
| PF03471 | PFAM | Transporter associated domain | JGI | N/A | IEA |
|
Glyma.02g298200 not represented in the dataset |
Glyma.02g298200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.14g015600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma02g46780 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.02g298200.2 sequence-type=transcript locus=Glyma.02g298200 ID=Glyma.02g298200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 TTGGGAGCTGGCAAGTAGCAACTACCAAGGGCCACCAATGCACGCGCCACCTTTTCCAGTTTCCACTATTCCCTTCCAAACCCTAATTTTACTCCAATTCTCCGTTTAACATTTGCAATTTTTTATTCCAAAACACCCCAAAATATAATTTATTTAGCGCATATACGTTTCCTCTTTCTTTTTTGCCGTTCCCCTTCCTGTGTTGCATAACACAACCAATTCTTTTACCACTCTGTGATTTGATTACTAAGCAACATACAACTACTTTCTCAGCTTGATTGAGTTTATTTACAGTTCTTTGTACGAAACTTTGATTTTGAATTGGTGGGTGTTTTTGTTCTGTTATGAGTGATGATGACACTCGAATCTTGGGTTCTCAGTCACCAAATGTTCTCCTCCAGTTCCAGATTGTTTTACCCCGCGCATGAGAATCGGCGAAAGAGCTTGCCAATCAAAGTTTTGGGTAGAAACACTAGATACTCATTTCCCTTTGTGCCCAATTGTGTTGCTCCATCCTCTTTTACAAGGCTTCATGCTTCAAGTTTTGAAGCAGATGCCAAGTTACAAGATAGAACTCGACTGAGGTGTTTAGGTAGTAGCAGTGATTGTTTGAGCGATAGAAATGTCGTTTCCAACTCCAATTTGAACTGTATACAGGAATTGTTAAAGAGGGGAATCATCCTTGCTGCAACTGTTTGTGGGTTATTGGTGTTTGGATGTTCACGAGTTTTCGCCGTTGAAGGGGTTGTGAATGCAGGATATGGTGTCTTTGGACAGAGCATTCTTTTGCTTAGGAATACATGGCCTAAAGTGTTGCAAGTTCTTCGTATATTTAAGGAGCAAGGTTTGGTGCTGGCAGTGCTTTTGGGCCTTTCAGCTTTTTTCTCAATGGCAGAGACTTCAATCACTACTCTTTGGCCTTGGAAGGGTGGTCAATATTGGGGCAACTGCTCTTGTCACTGAAGCAGCAACTGCTATGTTTGGTGAAGCTGGTGTCAGTGCAGCAACAGGAGTGATGACTGTTGCCATTTTGCTTCTCACTGAAATCACTCCAAAAAGCATAGCTGTTCATAACGCCACAGAGGTGGCTCGGTTTGTGGTCAGGCCAGTGGCATGGCTTTCCCTGGTGTTGTATCCTGTAGGAAGAATTGTTACTTATCTTTCAATGGGGATGCTGAAATTGCTTGGCCTAAAAGGAAGAAGTGAGCCATATGTAACTGAAGATGAGCTAAAATTGATGCTAAGAGGTGCAGAATTAAGTGGGGCAATAGAGGAGGAAGAACAGGATATGATTGAAAATGTGTTAGAGATAAAAGACACACATGTCAGAGAGGTTATGACACCTCTTGTTGATGTTGTTGCAATTGATGCAAGTTCAAGCCTGGTAGACTTTCATCACTTGTGGGTCACACATCAGTACTCAAGGGTACCTGTTTTTGAGCAACGTGTTGATAATATAATGGGTATAGCATATGCAATGGATCTGCTGGATTATGTTCAAAAGGGTGAGTTGCTAGAAAGTACTACGGTTGGAGATATGGCTCACAAACCTGCTTATTTTGTACCTGATTCAATGTCTGTTTGGAATCTTCTTAGAGAGTTCAGAATCAGGAAGGTTCACATGGCGGTTGTTCTTAACGAGTATGGTGGAACTGTGGGGATTGTAACACTCGAAGATGTTGTTGAGGAAATTGTTGGTGAAATATTTGATGAAAATGACTCAAAGGAGGAGATACAGAAAAAAACTGGTTACATTGTAATGCGAGCTGAGGGTGTTTTTGATGTGGATGCAAACACATCCATTGATCAGCTCTCTGAAGATTTGAACATCAAGATGCCAGAGGGTCACCAATATGAGACGGTATCAGGCTTTGTGTGTGAAGCATTTGGATACATTCCAAGGACAGGTGAGTGCATCAAAGTAGTTCTTGAAAGGGAAGATGAAGATGATAACAATGAGTCCAATGCTGACCAGCAGGATCAGAAGGAGAAGAACCAGAGTTTCAAACTTGAGATACTAGCTGGAAATGCCAGAAAGGTGAGCGCTGTTCGGTTTGAACACATAAATAATAATGATGAAATGTTGGAGACTAAAGTAACTCGCATGATCCCCAAAATCATGAAAAGAAAATGGAGGAGTGATGCAAACTCAGACAATGATGCAGAATATGACGGAGATACATTTGCAAAGACACCACAGGATGACATTTCTAGTGAATATTTAGTTGATCAGGAAAATTCTAACAGAGGTTAAGTTTGTCCGTTATTCATATTTTTTCTCCTTTCTTTATACCTGGCATGCTTTTGTGCCATTTTTGCAACAGCCTATAAGATGAAAAAATTGAGATACATGTTCAAAATGAGAAGCAATGAGTTCAAGCATGTAAAACCTTGCAAAAGACGAATTTGAGGCGTCTTTGCTAACGAAAGTCTTTGGTATAATAAAGATGTCAGGTTTGATCAAAACCATAGCCATTCTTCC
>Glyma.02g298200.1 sequence-type=CDS polypeptide=Glyma.02g298200.1.p locus=Glyma.02g298200 ID=Glyma.02g298200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGATGACACTCGAATCTTGGGTTCTCAGTCACCAAATGTTCTCCTCCAGTTCCAGATTGTTTTACCCCGCGCATGAGAATCGGCGAAAGAGCTTGCCAATCAAAGTTTTGGGTAGAAACACTAGATACTCATTTCCCTTTGTGCCCAATTGTGTTGCTCCATCCTCTTTTACAAGGCTTCATGCTTCAAGTTTTGAAGCAGATGCCAAGTTACAAGATAGAACTCGACTGAGGTGTTTAGGTAGTAGCAGTGATTGTTTGAGCGATAGAAATGTCGTTTCCAACTCCAATTTGAACTGTATACAGGAATTGTTAAAGAGGGGAATCATCCTTGCTGCAACTGTTTGTGGGTTATTGGTGTTTGGATGTTCACGAGTTTTCGCCGTTGAAGGGGTTGTGAATGCAGGATATGGTGTCTTTGGACAGAGCATTCTTTTGCTTAGGAATACATGGCCTAAAGTGTTGCAAGTTCTTCGTATATTTAAGGAGCAAGGTTTGGTGCTGGCAGTGCTTTTGGGCCTTTCAGCTTTTTTCTCAATGGCAGAGACTTCAATCACTACTCTTTGGCCTTGGAAGGTTCGTGAGTTGGCTGAAAAGGAGTCTGAAAACGGTGTCTTCAGACTACTCCGAAGTGATGTTACTCGGTTCCTTACCACAATACTTATTGGCACAACGGTGGTCAATATTGGGGCAACTGCTCTTGTCACTGAAGCAGCAACTGCTATGTTTGGTGAAGCTGGTGTCAGTGCAGCAACAGGAGTGATGACTGTTGCCATTTTGCTTCTCACTGAAATCACTCCAAAAAGCATAGCTGTTCATAACGCCACAGAGGTGGCTCGGTTTGTGGTCAGGCCAGTGGCATGGCTTTCCCTGGTGTTGTATCCTGTAGGAAGAATTGTTACTTATCTTTCAATGGGGATGCTGAAATTGCTTGGCCTAAAAGGAAGAAGTGAGCCATATGTAACTGAAGATGAGCTAAAATTGATGCTAAGAGGTGCAGAATTAAGTGGGGCAATAGAGGAGGAAGAACAGGATATGATTGAAAATGTGTTAGAGATAAAAGACACACATGTCAGAGAGGTTATGACACCTCTTGTTGATGTTGTTGCAATTGATGCAAGTTCAAGCCTGGTAGACTTTCATCACTTGTGGGTCACACATCAGTACTCAAGGGTACCTGTTTTTGAGCAACGTGTTGATAATATAATGGGTATAGCATATGCAATGGATCTGCTGGATTATGTTCAAAAGGGTGAGTTGCTAGAAAGTACTACGGTTGGAGATATGGCTCACAAACCTGCTTATTTTGTACCTGATTCAATGTCTGTTTGGAATCTTCTTAGAGAGTTCAGAATCAGGAAGGTTCACATGGCGGTTGTTCTTAACGAGTATGGTGGAACTGTGGGGATTGTAACACTCGAAGATGTTGTTGAGGAAATTGTTGGTGAAATATTTGATGAAAATGACTCAAAGGAGGAGATACAGAAAAAAACTGGTTACATTGTAATGCGAGCTGAGGGTGTTTTTGATGTGGATGCAAACACATCCATTGATCAGCTCTCTGAAGATTTGAACATCAAGATGCCAGAGGGTCACCAATATGAGACGGTATCAGGCTTTGTGTGTGAAGCATTTGGATACATTCCAAGGACAGGTGAGTGCATCAAAGTAGTTCTTGAAAGGGAAGATGAAGATGATAACAATGAGTCCAATGCTGACCAGCAGGATCAGAAGGAGAAGAACCAGAGTTTCAAACTTGAGATACTAGCTGGAAATGCCAGAAAGGTGAGCGCTGTTCGGTTTGAACACATAAATAATAATGATGAAATGTTGGAGACTAAAGTAACTCGCATGATCCCCAAAATCATGAAAAGAAAATGGAGGAGTGATGCAAACTCAGACAATGATGCAGAATATGACGGAGATACATTTGCAAAGACACCACAGGATGACATTTCTAGTGAATATTTAGTTGATCAGGAAAATTCTAACAGAGGTTAA >Glyma.02g298200.2 sequence-type=CDS polypeptide=Glyma.02g298200.2.p locus=Glyma.02g298200 ID=Glyma.02g298200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCAGGATATGGTGTCTTTGGACAGAGCATTCTTTTGCTTAGGAATACATGGCCTAAAGTGTTGCAAGTTCTTCGTATATTTAAGGAGCAAGGTTTGGTGCTGGCAGTGCTTTTGGGCCTTTCAGCTTTTTTCTCAATGGCAGAGACTTCAATCACTACTCTTTGGCCTTGGAAGGGTGGTCAATATTGGGGCAACTGCTCTTGTCACTGAAGCAGCAACTGCTATGTTTGGTGAAGCTGGTGTCAGTGCAGCAACAGGAGTGATGACTGTTGCCATTTTGCTTCTCACTGAAATCACTCCAAAAAGCATAGCTGTTCATAACGCCACAGAGGTGGCTCGGTTTGTGGTCAGGCCAGTGGCATGGCTTTCCCTGGTGTTGTATCCTGTAGGAAGAATTGTTACTTATCTTTCAATGGGGATGCTGAAATTGCTTGGCCTAAAAGGAAGAAGTGAGCCATATGTAACTGAAGATGAGCTAAAATTGATGCTAAGAGGTGCAGAATTAAGTGGGGCAATAGAGGAGGAAGAACAGGATATGATTGAAAATGTGTTAGAGATAAAAGACACACATGTCAGAGAGGTTATGACACCTCTTGTTGATGTTGTTGCAATTGATGCAAGTTCAAGCCTGGTAGACTTTCATCACTTGTGGGTCACACATCAGTACTCAAGGGTACCTGTTTTTGAGCAACGTGTTGATAATATAATGGGTATAGCATATGCAATGGATCTGCTGGATTATGTTCAAAAGGGTGAGTTGCTAGAAAGTACTACGGTTGGAGATATGGCTCACAAACCTGCTTATTTTGTACCTGATTCAATGTCTGTTTGGAATCTTCTTAGAGAGTTCAGAATCAGGAAGGTTCACATGGCGGTTGTTCTTAACGAGTATGGTGGAACTGTGGGGATTGTAACACTCGAAGATGTTGTTGAGGAAATTGTTGGTGAAATATTTGATGAAAATGACTCAAAGGAGGAGATACAGAAAAAAACTGGTTACATTGTAATGCGAGCTGAGGGTGTTTTTGATGTGGATGCAAACACATCCATTGATCAGCTCTCTGAAGATTTGAACATCAAGATGCCAGAGGGTCACCAATATGAGACGGTATCAGGCTTTGTGTGTGAAGCATTTGGATACATTCCAAGGACAGGTGAGTGCATCAAAGTAGTTCTTGAAAGGGAAGATGAAGATGATAACAATGAGTCCAATGCTGACCAGCAGGATCAGAAGGAGAAGAACCAGAGTTTCAAACTTGAGATACTAGCTGGAAATGCCAGAAAGGTGAGCGCTGTTCGGTTTGAACACATAAATAATAATGATGAAATGTTGGAGACTAAAGTAACTCGCATGATCCCCAAAATCATGAAAAGAAAATGGAGGAGTGATGCAAACTCAGACAATGATGCAGAATATGACGGAGATACATTTGCAAAGACACCACAGGATGACATTTCTAGTGAATATTTAGTTGATCAGGAAAATTCTAACAGAGGTTAA
>Glyma.02g298200.1.p sequence-type=predicted peptide transcript=Glyma.02g298200.1 locus=Glyma.02g298200 ID=Glyma.02g298200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MMTLESWVLSHQMFSSSSRLFYPAHENRRKSLPIKVLGRNTRYSFPFVPNCVAPSSFTRLHASSFEADAKLQDRTRLRCLGSSSDCLSDRNVVSNSNLNCIQELLKRGIILAATVCGLLVFGCSRVFAVEGVVNAGYGVFGQSILLLRNTWPKVLQVLRIFKEQGLVLAVLLGLSAFFSMAETSITTLWPWKVRELAEKESENGVFRLLRSDVTRFLTTILIGTTVVNIGATALVTEAATAMFGEAGVSAATGVMTVAILLLTEITPKSIAVHNATEVARFVVRPVAWLSLVLYPVGRIVTYLSMGMLKLLGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDASSSLVDFHHLWVTHQYSRVPVFEQRVDNIMGIAYAMDLLDYVQKGELLESTTVGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIQKKTGYIVMRAEGVFDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGECIKVVLEREDEDDNNESNADQQDQKEKNQSFKLEILAGNARKVSAVRFEHINNNDEMLETKVTRMIPKIMKRKWRSDANSDNDAEYDGDTFAKTPQDDISSEYLVDQENSNRG* >Glyma.02g298200.2.p sequence-type=predicted peptide transcript=Glyma.02g298200.2 locus=Glyma.02g298200 ID=Glyma.02g298200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MQDMVSLDRAFFCLGIHGLKCCKFFVYLRSKVWCWQCFWAFQLFSQWQRLQSLLFGLGRVVNIGATALVTEAATAMFGEAGVSAATGVMTVAILLLTEITPKSIAVHNATEVARFVVRPVAWLSLVLYPVGRIVTYLSMGMLKLLGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDASSSLVDFHHLWVTHQYSRVPVFEQRVDNIMGIAYAMDLLDYVQKGELLESTTVGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIQKKTGYIVMRAEGVFDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGECIKVVLEREDEDDNNESNADQQDQKEKNQSFKLEILAGNARKVSAVRFEHINNNDEMLETKVTRMIPKIMKRKWRSDANSDNDAEYDGDTFAKTPQDDISSEYLVDQENSNRG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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