Glyma.02g296300

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Report for Sequence Feature Glyma.02g296300

Feature Type:	gene_model
Chromosome:	Gm02
Start:	47399263
stop:	47406220
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.02g296300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G26700.1	AT	fimbrin 1	JGI	N/A	IEA
GO:0051017	GO-bp	actin filament bundle assembly	EnsemblGenomes	N/A	IEA
GO:0051639	GO-bp	actin filament network formation	EnsemblGenomes	N/A	IEA
GO:0051764	GO-bp	actin crosslink formation	EnsemblGenomes	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0005884	GO-cc	actin filament	EnsemblGenomes	N/A	IEA
GO:0032432	GO-cc	actin filament bundle	EnsemblGenomes	N/A	IEA
GO:0003779	GO-mf	actin binding	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
GO:0051015	GO-mf	actin filament binding	EnsemblGenomes	N/A	IEA
KOG0046	KOG	Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily	JGI	N/A	IEA
PTHR19961	Panther	FIMBRIN/PLASTIN	JGI	N/A	IEA
PTHR19961:SF9	Panther		JGI	N/A	IEA
PF00307	PFAM	Calponin homology (CH) domain	JGI	N/A	IEA

Expression Patterns of Glyma.02g296300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g296300 not represented in the dataset	Glyma.02g296300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.02g296300

Paralog	Evidence	Comments
Glyma.14g017400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g296300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma02g46580	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.02g296300

Limit To All Plant Sequences

>Glyma.02g296300.2 sequence-type=transcript locus=Glyma.02g296300 ID=Glyma.02g296300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGCTGAGATCACAAAGTCGGTTCCACAAAACACCAAAAAAACTATACACCCAAAGAACAACGTGTGCGAAGCTTAGAGCGAGTTCAGCATACTCTCGTGGTTAACCCACGCGCGCAATCTGAAAATAAACCAAAAACAAAGACAGTCTCATTCTCATAGTACTTGGGAGTCACACGGTCGGTTCTCTTCTCTGTCACTTTGCCTACCCACTAAGAAAAATCGATCctttcttctcttccatacgcttctttctcttctcttcATTCATTTCAATTTGTGGTGTTAGTGAAATAATAATGAAGGGGTAGTTGAACATTCAAACAACCCATGCCCTCATTTTTATGTGTGGGTTGGTGACTCCGGGAGCTAAACCACTTCTTGTTTGGGTTTTGTTGTAGATTTGGTCTTATATTTGGATTAGACCGTGTAGAATTGCATCTGGCAATAGGTTGTTGAGTAATACGCATAACGCATTGTTTTGTGATACAAGTACTCTTAAGCTTTTCTGGGGAATTTTTAGTTTGGGGTATACATTACAATTTCTAGCTTTGGTTAGTAATTCTCCAAGATGTCAAAATTTGAGGGTGTTATTGTCTCCGATCAATGGCTTCATAGCCAGTTCACGCAGGTTGAGCTTCGCAGCCTGAAATCAAAATTTGTCTCTTTAAAGAATCAGAATGGTAAAGTTACATTTGGAGATTTGCCGCCTTTGATGGTGAAGCTAAACGCATTCAGAGATATGTACAGTGAGGATGAGATTAGGGGTATCTTGGGTGAATCAGGCACTGATTTTACCAATGACATTGATTTTGAAGCCTTCTTAAAGGCATATTTGAATTTGCAAAGCCAAGCTACTACAAAACAAGGTGGTAGGAGACACTCCTCGTCATTCCTCAAAGAAACCGTGACCACCCTTCTTCACACAATCAGTGAATCAGAAAAGGCCTGCTATGTTGCCCACATAAACAGCTACCTTGGTGATGATCCATTTTTGAAGCAATATCTTCCTTTGGACCCAGCTACAAATGATATATTTGATCTTGCAAAAGATGGTGTTCTTCTGTGTAAACTTATCAATGTTGCTGTGCCTGGGACTATAGATGAACGGACCATCAATTGCAAACGGAATCCTAGTTTTTGGGAGGTAAACGAGAACCATACTCTATGCCTCAATTCAGCCAAGGCTATTGGCTGCACAGTGGTTAACATTGGCGCACAGGACTTAGTTGAAGGAAGACCTCATCTTGTTCTAGGGTTGATTTCCCAAATCATAAAGATTCAGCTGCTGGCTGATCTCAACCTTAAGAAGACACCTCAGCTTGTGGAATTGGTTGATGACAACGAGGAGATCGAAGAGCTTCTTAATTTGTCTCCTGAAAAGGTTCTACTAAAATGGATGAATTTTCATCTCCAGAGAGCAGGTTACGAGAAAACTGTCAGAAATTTTTCTTCTGATGTTAAGGATGGAGAGGCCTATGCTTATCTGCTTAATGTCCTTGCTCCTGAACATTGCAGTCCGGCCACCTTGGATACCAAGGACGCCAATGAAAGGGCAAATCTGGTTCTTGATCATGCAGAGAGAATGGGCTGCAAAAGATACTTGACCCCAAGGGATGTTGCAGAGGGTACTTCAAACTTGAATCTTGCATTTGTTGCACAATTGTTTCATCATAGGAGTTGTCTATCTACAGACACTAAGAAGATGTCCTATGCTGAGATGATGACGGATGATGTGCAAACATCTAGAGAAGAGAGATGCTTCCGAATGTGGATCAATAGTCTTGGAATTTCTACACATGTAAATAATCTGTTTGAGGATGTCAGAAATGGATGGATACTTTTAGAAGTGTTAGACAAGATATTTCCTGGATCAGTTAACTGGAAACATGCAACAAGACCTCCAATTAGAATGCCATTCAGAAAAGTAGAGAACTGCAATCAGGTCATAAAAATTGGTAAACAACTGAGATTCTCACTAGTCAATGTAGCTGGTAATGACATTGTGCAAGGAAATAAGAAGCTCATTCTTGCTTTATTGTGGCAGCTCATGCGATTCACAATGCTTCAACTGTTGAAAAATTTGAGATCTCATTCCCAAGGAAAGGAGATCAGTGATGCTGATATCCTGAAATGGGTGAACAGAAAAGTGAAGATCATTGGTAGAACTTCTCACATAGAGAGCTTCAAGGAGAAGAGCTTGTCAAGTGGACTCTTTTTCCTTGAGCTTCTGAGTGCTGTTGAGCCTAGGGTTGTCAATTGGAACCTTGTCACCAAGGGTGAAAGTGATGATGAGAAGAGGTTGAATGCCACTTATATAATCAGCGTTGCACGGAAGCTCGGTTGTTCTATATTTTTGTTACCTGAGGATATTATGGAGGTTAATCAGAAGATGATTCTCACTCTTGCAGCCAGTATAATGTATTGGAGCCTGCAACAACAGACTGAAGACACGGATTCATTTCCTTCACCTGTCAACACTGCTACTACCACCACGCCCGAAGCATCCCCGGCACCTTCGGTGTGTGGTGAAGATGAAAGTTCCTCCATTGGCGGTGAATTCTCCAACTTGAGTGTTGACGATGCCACCTCTGACACCACAGCCACTTCTTCACAACCCGAGTCTGACAGTGTTTCTGCTGGAGATGAGCTGTTATGAGTCATCTAGTTGGCATAAGATGAGTGCTAAATGTTTTTTGTTAAAGGGAGAATATAATGAGTAATGACATTGCAAAGCTTATGAAACACCTCCACCATGGTCTCAACCTTCAAAAAAGTTAGGGAAGTAAAGATACCTATAGAATAGTAGATGTGAATAGTCTGTACAAAAATATCATGTTCTTTGGAGAGAAATGCTTATTCAGAGGGATCAGAATGAATAAAGCTTGGAGGGGAAGAAAGAAATGAATGTGATCGATTCACACGACTCCCTTATATTGCCTTTAAGTGGGTTCCACTACTGTATTTGTATTTTGTCATTCGTTACGTTATGATGACCAACAATGATGACCATTTACCGTGTCAGATGAACAGAAAATTTATAATTAGCTCTCATTCGTTCTTAAGGTTTAGTCTGATAAAAAAGATGAAATGCATTGTGAATGTCTCAAAGCCTTGTCATCATTTTTCTGTCGATAGATTCGTTGAGCGAGTTGGATTTGTTGAGTTAATTCGTTTGATTTTTTTTTTGCGGTACAGGTTAGGTTTTTAATCCAACAGTGTTTTGACTTATCCCATTTAATCTGTCTCAAAGATTAGATGTGAATATGATTTTCTTATTATCATGATATTGATATGAAAGGtatttttctct

Coding sequences of Glyma.02g296300

Limit To All Plant Sequences

>Glyma.02g296300.1 sequence-type=CDS polypeptide=Glyma.02g296300.1.p locus=Glyma.02g296300 ID=Glyma.02g296300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAAAATTTGAGGGTGTTATTGTCTCCGATCAATGGCTTCATAGCCAGTTCACGCAGGTTGAGCTTCGCAGCCTGAAATCAAAATTTGTCTCTTTAAAGAATCAGAATGGTAAAGTTACATTTGGAGATTTGCCGCCTTTGATGGTGAAGCTAAACGCATTCAGAGATATGTACAGTGAGGATGAGATTAGGGGTATCTTGGGTGAATCAGGCACTGATTTTACCAATGACATTGATTTTGAAGCCTTCTTAAAGGCATATTTGAATTTGCAAAGCCAAGCTACTACAAAACAAGGTGGTAGGAGACACTCCTCGTCATTCCTCAAAGAAACCGTGACCACCCTTCTTCACACAATCAGTGAATCAGAAAAGGCCTGCTATGTTGCCCACATAAACAGCTACCTTGGTGATGATCCATTTTTGAAGCAATATCTTCCTTTGGACCCAGCTACAAATGATATATTTGATCTTGCAAAAGATGGTGTTCTTCTGTGTAAACTTATCAATGTTGCTGTGCCTGGGACTATAGATGAACGGACCATCAATTGCAAACGGAATCCTAGTTTTTGGGAGGTAAACGAGAACCATACTCTATGCCTCAATTCAGCCAAGGCTATTGGCTGCACAGTGGTTAACATTGGCGCACAGGACTTAGTTGAAGGAAGACCTCATCTTGTTCTAGGGTTGATTTCCCAAATCATAAAGATTCAGCTGCTGGCTGATCTCAACCTTAAGAAGACACCTCAGCTTGTGGAATTGGTTGATGACAACGAGGAGATCGAAGAGCTTCTTAATTTGTCTCCTGAAAAGGTTCTACTAAAATGGATGAATTTTCATCTCCAGAGAGCAGGTTACGAGAAAACTGTCAGAAATTTTTCTTCTGATGTTAAGGATGGAGAGGCCTATGCTTATCTGCTTAATGTCCTTGCTCCTGAACATTGCAGTCCGGCCACCTTGGATACCAAGGACGCCAATGAAAGGGCAAATCTGGTTCTTGATCATGCAGAGAGAATGGGCTGCAAAAGATACTTGACCCCAAGGGATGTTGCAGAGGGTACTTCAAACTTGAATCTTGCATTTGTTGCACAATTGTTTCATCATAGGAGTTGTCTATCTACAGACACTAAGAAGATGTCCTATGCTGAGATGATGACGGATGATGTGCAAACATCTAGAGAAGAGAGATGCTTCCGAATGTGGATCAATAGTCTTGGAATTTCTACACATGTAAATAATCTGTTTGAGGATGTCAGAAATGGATGGATACTTTTAGAAGTGTTAGACAAGATATTTCCTGGATCAGTTAACTGGAAACATGCAACAAGACCTCCAATTAGAATGCCATTCAGAAAAGTAGAGAACTGCAATCAGGTCATAAAAATTGGTAAACAACTGAGATTCTCACTAGTCAATGTAGCTGGTAATGACATTGTGCAAGGAAATAAGAAGCTCATTCTTGCTTTATTGTGGCAGCTCATGCGATTCACAATGCTTCAACTGTTGAAAAATTTGAGATCTCATTCCCAAGGAAAGGAGATCAGTGATGCTGATATCCTGAAATGGGTGAACAGAAAAGTGAAGATCATTGGTAGAACTTCTCACATAGAGAGCTTCAAGGAGAAGAGCTTGTCAAGTGGACTCTTTTTCCTTGAGCTTCTGAGTGCTGTTGAGCCTAGGGTTGTCAATTGGAACCTTGTCACCAAGGGTGAAAGTGATGATGAGAAGAGGTTGAATGCCACTTATATAATCAGCGTTGCACGGAAGCTCGGTTGTTCTATATTTTTGTTACCTGAGGATATTATGGAGGTTAATCAGAAGATGATTCTCACTCTTGCAGCCAGTATAATGTATTGGAGCCTGCAACAACAGACTGAAGACACGGATTCATTTCCTTCACCTGTCAACACTGCTACTACCACCACGCCCGAAGCATCCCCGGCACCTTCGGTGTGTGGTGAAGATGAAAGTTCCTCCATTGGCGGTGAATTCTCCAACTTGAGTGTTGACGATGCCACCTCTGACACCACAGCCACTTCTTCACAACCCGAGTCTGACAGTGTTTCTGCTGGAGATGAGCTGTTATGA

>Glyma.02g296300.2 sequence-type=CDS polypeptide=Glyma.02g296300.2.p locus=Glyma.02g296300 ID=Glyma.02g296300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAAAATTTGAGGGTGTTATTGTCTCCGATCAATGGCTTCATAGCCAGTTCACGCAGGTTGAGCTTCGCAGCCTGAAATCAAAATTTGTCTCTTTAAAGAATCAGAATGGTAAAGTTACATTTGGAGATTTGCCGCCTTTGATGGTGAAGCTAAACGCATTCAGAGATATGTACAGTGAGGATGAGATTAGGGGTATCTTGGGTGAATCAGGCACTGATTTTACCAATGACATTGATTTTGAAGCCTTCTTAAAGGCATATTTGAATTTGCAAAGCCAAGCTACTACAAAACAAGGTGGTAGGAGACACTCCTCGTCATTCCTCAAAGAAACCGTGACCACCCTTCTTCACACAATCAGTGAATCAGAAAAGGCCTGCTATGTTGCCCACATAAACAGCTACCTTGGTGATGATCCATTTTTGAAGCAATATCTTCCTTTGGACCCAGCTACAAATGATATATTTGATCTTGCAAAAGATGGTGTTCTTCTGTGTAAACTTATCAATGTTGCTGTGCCTGGGACTATAGATGAACGGACCATCAATTGCAAACGGAATCCTAGTTTTTGGGAGGTAAACGAGAACCATACTCTATGCCTCAATTCAGCCAAGGCTATTGGCTGCACAGTGGTTAACATTGGCGCACAGGACTTAGTTGAAGGAAGACCTCATCTTGTTCTAGGGTTGATTTCCCAAATCATAAAGATTCAGCTGCTGGCTGATCTCAACCTTAAGAAGACACCTCAGCTTGTGGAATTGGTTGATGACAACGAGGAGATCGAAGAGCTTCTTAATTTGTCTCCTGAAAAGGTTCTACTAAAATGGATGAATTTTCATCTCCAGAGAGCAGGTTACGAGAAAACTGTCAGAAATTTTTCTTCTGATGTTAAGGATGGAGAGGCCTATGCTTATCTGCTTAATGTCCTTGCTCCTGAACATTGCAGTCCGGCCACCTTGGATACCAAGGACGCCAATGAAAGGGCAAATCTGGTTCTTGATCATGCAGAGAGAATGGGCTGCAAAAGATACTTGACCCCAAGGGATGTTGCAGAGGGTACTTCAAACTTGAATCTTGCATTTGTTGCACAATTGTTTCATCATAGGAGTTGTCTATCTACAGACACTAAGAAGATGTCCTATGCTGAGATGATGACGGATGATGTGCAAACATCTAGAGAAGAGAGATGCTTCCGAATGTGGATCAATAGTCTTGGAATTTCTACACATGTAAATAATCTGTTTGAGGATGTCAGAAATGGATGGATACTTTTAGAAGTGTTAGACAAGATATTTCCTGGATCAGTTAACTGGAAACATGCAACAAGACCTCCAATTAGAATGCCATTCAGAAAAGTAGAGAACTGCAATCAGGTCATAAAAATTGGTAAACAACTGAGATTCTCACTAGTCAATGTAGCTGGTAATGACATTGTGCAAGGAAATAAGAAGCTCATTCTTGCTTTATTGTGGCAGCTCATGCGATTCACAATGCTTCAACTGTTGAAAAATTTGAGATCTCATTCCCAAGGAAAGGAGATCAGTGATGCTGATATCCTGAAATGGGTGAACAGAAAAGTGAAGATCATTGGTAGAACTTCTCACATAGAGAGCTTCAAGGAGAAGAGCTTGTCAAGTGGACTCTTTTTCCTTGAGCTTCTGAGTGCTGTTGAGCCTAGGGTTGTCAATTGGAACCTTGTCACCAAGGGTGAAAGTGATGATGAGAAGAGGTTGAATGCCACTTATATAATCAGCGTTGCACGGAAGCTCGGTTGTTCTATATTTTTGTTACCTGAGGATATTATGGAGGTTAATCAGAAGATGATTCTCACTCTTGCAGCCAGTATAATGTATTGGAGCCTGCAACAACAGACTGAAGACACGGATTCATTTCCTTCACCTGTCAACACTGCTACTACCACCACGCCCGAAGCATCCCCGGCACCTTCGGTGTGTGGTGAAGATGAAAGTTCCTCCATTGGCGGTGAATTCTCCAACTTGAGTGTTGACGATGCCACCTCTGACACCACAGCCACTTCTTCACAACCCGAGTCTGACAGTGTTTCTGCTGGAGATGAGCTGTTATGA

Predicted protein sequences of Glyma.02g296300

Limit To All Plant Sequences

>Glyma.02g296300.1.p sequence-type=predicted peptide transcript=Glyma.02g296300.1 locus=Glyma.02g296300 ID=Glyma.02g296300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSKFEGVIVSDQWLHSQFTQVELRSLKSKFVSLKNQNGKVTFGDLPPLMVKLNAFRDMYSEDEIRGILGESGTDFTNDIDFEAFLKAYLNLQSQATTKQGGRRHSSSFLKETVTTLLHTISESEKACYVAHINSYLGDDPFLKQYLPLDPATNDIFDLAKDGVLLCKLINVAVPGTIDERTINCKRNPSFWEVNENHTLCLNSAKAIGCTVVNIGAQDLVEGRPHLVLGLISQIIKIQLLADLNLKKTPQLVELVDDNEEIEELLNLSPEKVLLKWMNFHLQRAGYEKTVRNFSSDVKDGEAYAYLLNVLAPEHCSPATLDTKDANERANLVLDHAERMGCKRYLTPRDVAEGTSNLNLAFVAQLFHHRSCLSTDTKKMSYAEMMTDDVQTSREERCFRMWINSLGISTHVNNLFEDVRNGWILLEVLDKIFPGSVNWKHATRPPIRMPFRKVENCNQVIKIGKQLRFSLVNVAGNDIVQGNKKLILALLWQLMRFTMLQLLKNLRSHSQGKEISDADILKWVNRKVKIIGRTSHIESFKEKSLSSGLFFLELLSAVEPRVVNWNLVTKGESDDEKRLNATYIISVARKLGCSIFLLPEDIMEVNQKMILTLAASIMYWSLQQQTEDTDSFPSPVNTATTTTPEASPAPSVCGEDESSSIGGEFSNLSVDDATSDTTATSSQPESDSVSAGDELL*

>Glyma.02g296300.2.p sequence-type=predicted peptide transcript=Glyma.02g296300.2 locus=Glyma.02g296300 ID=Glyma.02g296300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSKFEGVIVSDQWLHSQFTQVELRSLKSKFVSLKNQNGKVTFGDLPPLMVKLNAFRDMYSEDEIRGILGESGTDFTNDIDFEAFLKAYLNLQSQATTKQGGRRHSSSFLKETVTTLLHTISESEKACYVAHINSYLGDDPFLKQYLPLDPATNDIFDLAKDGVLLCKLINVAVPGTIDERTINCKRNPSFWEVNENHTLCLNSAKAIGCTVVNIGAQDLVEGRPHLVLGLISQIIKIQLLADLNLKKTPQLVELVDDNEEIEELLNLSPEKVLLKWMNFHLQRAGYEKTVRNFSSDVKDGEAYAYLLNVLAPEHCSPATLDTKDANERANLVLDHAERMGCKRYLTPRDVAEGTSNLNLAFVAQLFHHRSCLSTDTKKMSYAEMMTDDVQTSREERCFRMWINSLGISTHVNNLFEDVRNGWILLEVLDKIFPGSVNWKHATRPPIRMPFRKVENCNQVIKIGKQLRFSLVNVAGNDIVQGNKKLILALLWQLMRFTMLQLLKNLRSHSQGKEISDADILKWVNRKVKIIGRTSHIESFKEKSLSSGLFFLELLSAVEPRVVNWNLVTKGESDDEKRLNATYIISVARKLGCSIFLLPEDIMEVNQKMILTLAASIMYWSLQQQTEDTDSFPSPVNTATTTTPEASPAPSVCGEDESSSIGGEFSNLSVDDATSDTTATSSQPESDSVSAGDELL*

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