Glyma.02g294200

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.02g294200): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.02g294200): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.02g294200

Feature Type:	gene_model
Chromosome:	Gm02
Start:	47256480
stop:	47263517
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.02g294200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G20290.1	AT	EPS15 homology domain 1	JGI	N/A	IEA
GO:0003924	GO-mf	GTPase activity	JGI	N/A	IEA
GO:0005509	GO-mf	calcium ion binding	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	EnsemblGenomes	N/A	IEA
GO:0005525	GO-mf	GTP binding	EnsemblGenomes	N/A	IEA
GO:0005525	GO-mf	GTP binding	JGI	N/A	IEA
KOG1954	KOG	Endocytosis/signaling protein EHD1	JGI	N/A	IEA
PTHR11216	Panther	EH DOMAIN	JGI	N/A	IEA
PTHR11216:SF31	Panther	AT21416P	JGI	N/A	IEA
PF00350	PFAM	Dynamin family	JGI	N/A	IEA

Expression Patterns of Glyma.02g294200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g294200 not represented in the dataset	Glyma.02g294200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.02g294200 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma02g46350	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.02g294200

Limit To All Plant Sequences

>Glyma.02g294200.2 sequence-type=transcript locus=Glyma.02g294200 ID=Glyma.02g294200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CAAAGGTGAGTTGGAACTACGAGACAAGGCGTAATTTGTCGCATTTAGATGAAACTCACAACTTTACTTGGCACTATTTTTTGGTAAACAAGATCAATATTCGTTAAAGCAGCATTTCTGCGCCAAATCTAGTTAGTTTCCATCGCCAATACAATACGACACCGCTTAATGCAAGTCCTCGTCGTCGTTTAACGCTCACGTTTTCTGTTCTCTGAGAAGGTAAAAAGCGTTAAAACGCAGCATCTCAAACACGCGATTCCGAAGCTTTTCTGCGATCAATGGAGTTCGACCCGATCCCAATCGGTTCGTGCTCCAAAGAACACCAGATGATCTATAAGGAGTGGTTCAATTACGCTGATTCAGATAGCGATGGCCGCATTACGGGGAGTGATGCCACCAAGTTTTTCGCCATGTCCAATTTGCCCCGCGAAGATCTTAAGCAGGTGTGGGCTATTGCAGATTCAAAGCGACAAGGATATCTTGGTTTCACTGAATTTATCATTGCTATGCAGCTAGTTTCTTTGGCTCAATCTGGGCACTCAATAACACCCGATCTGCTGACTAGTGATGTTGATTTTACAAATGGAAAACCTCCCTCAATGGAGGGTTTGGACGTATTACTAGTTAAGAAAAAGCATAAACAAAAAGAGGTTGATGCAAATGGTAGTTCTCAATTGCAGCCATCACCATCAAGTAATTGGTTTTCTTCAAAGTCAACAAAAAAGGTGCCTCTTTCCTCTGTGACATCAATAATTGACGGCTTGAAGAGACTCTACATTCAGAAGTTGAAGCCATTAGAAGTTACTTACCGTTTTAATGATTTTGTATCCCCATTACTGACAAATAGTGACTTTGATGCCAAACCAATGGTTATGCTTTTGGGTCAGTACTCAACTGGTAAAACAACATTTATCAAACATCTGCTTAAAAGTAGTTATCCAGGAGCACATATTGGACCTGAGCCAACAACTGATAGGTTTGTTGTTGTCATGTCTGGATCTGATGAGAGAAGCGTTCCTGGAAATACTGTTGCTGTCCAAGCAGACATGCCATTTAGTGGTCTTACAACTTTTGGCACAGCATTTTTGTCAAAATTTGTGTGTTCACAGATGCCTCATCCTCTACTGGAACACATCACATTTGTTGACACTCCGGGAGTTCTATCTGGAGAAAAGCAACGCACACAACGAGCATATGATTTTACGGGTGTAACATCTTGGTTTGCTGCTAAGTGTGATTTGATTCTCCTTCTGTTTGATCCTCACAAACTTGACATCAGTGATGAGTTCAATCGTGTGATATCATCCTTACGGGGGCATGATGACAAAATCCGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACCCAACAATTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAGACACCTGAAGTAATGCGAGTGTATATTGGCTCCTTCAATGACAAGCCTGTAAATGATGCTGCCACTGGTCCACTTGGGAAGGAACTCTTTGAAAAGGAACAGGATGATCTACTCTCGGATCTGAAAGATGTACCAAAAGCAGCTTGTGATCGAAGAATCAATGAGTTTGTAAAACGGGCCCGAGCAGCCAAGATACATGCTTACATTATCAGCCATCTTAAAAAGGAGATGCCTGCTATGATAGGCAAAGCTAAAGCTCAACAAAAGCTCATCGATAATTTGGCAGCTGAATTTGGAAAGGTACAAAGGGAGTTCCATTTACCTCCTGGCGATTTTCCAAATGTAGAGTTTTTCAGAGAGAGATTGAGTGGTTACAATATTGATAAGTTTGAAAAATTGAAACCAAAAATGACACAAGCAGTTGATGACATGTTAGCTTACGACATTCCTAATCTCTTGAAGAATTTTAGGAATCCCTATGATTAAATTTCTGAGCAATTGAGTCGGTGCTATAATTAGATTAGTTAGAGTGACATTTGTAGCGTACAAATTTTACGGGATCTTTATGCAATGTATGTGTGTCATGAGATCTTTATGTGCCATCCGGTGGCCTTTCTTTTCTAGTAGGAAGTTTTATTATTTAATATATGTTTTTGTATTTATGTATATTTTGTTATCTACAATCAAGTGTCAAGACAGAAAATAAAGGGAAAACACAATTACTTGTTTGCATC

Coding sequences of Glyma.02g294200

Limit To All Plant Sequences

>Glyma.02g294200.1 sequence-type=CDS polypeptide=Glyma.02g294200.1.p locus=Glyma.02g294200 ID=Glyma.02g294200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGTTCGACCCGATCCCAATCGGTTCGTGCTCCAAAGAACACCAGATGATCTATAAGGAGTGGTTCAATTACGCTGATTCAGATAGCGATGGCCGCATTACGGGGAGTGATGCCACCAAGTTTTTCGCCATGTCCAATTTGCCCCGCGAAGATCTTAAGCAGGTGTGGGCTATTGCAGATTCAAAGCGACAAGGATATCTTGGTTTCACTGAATTTATCATTGCTATGCAGCTAGTTTCTTTGGCTCAATCTGGGCACTCAATAACACCCGATCTGCTGACTAGTGATGTTGATTTTACAAATGGAAAACCTCCCTCAATGGAGGGTTTGGACGTATTACTAGTTAAGAAAAAGCATAAACAAAAAGAGGTTGATGCAAATGCAATTAGCAATAATGCAGGTAGTTCTCAATTGCAGCCATCACCATCAAGTAATTGGTTTTCTTCAAAGTCAACAAAAAAGGTGCCTCTTTCCTCTGTGACATCAATAATTGACGGCTTGAAGAGACTCTACATTCAGAAGTTGAAGCCATTAGAAGTTACTTACCGTTTTAATGATTTTGTATCCCCATTACTGACAAATAGTGACTTTGATGCCAAACCAATGGTTATGCTTTTGGGTCAGTACTCAACTGGTAAAACAACATTTATCAAACATCTGCTTAAAAGTAGTTATCCAGGAGCACATATTGGACCTGAGCCAACAACTGATAGGTTTGTTGTTGTCATGTCTGGATCTGATGAGAGAAGCGTTCCTGGAAATACTGTTGCTGTCCAAGCAGACATGCCATTTAGTGGTCTTACAACTTTTGGCACAGCATTTTTGTCAAAATTTGTGTGTTCACAGATGCCTCATCCTCTACTGGAACACATCACATTTGTTGACACTCCGGGAGTTCTATCTGGAGAAAAGCAACGCACACAACGAGCATATGATTTTACGGGTGTAACATCTTGGTTTGCTGCTAAGTGTGATTTGATTCTCCTTCTGTTTGATCCTCACAAACTTGACATCAGTGATGAGTTCAATCGTGTGATATCATCCTTACGGGGGCATGATGACAAAATCCGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACCCAACAATTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAGACACCTGAAGTAATGCGAGTGTATATTGGCTCCTTCAATGACAAGCCTGTAAATGATGCTGCCACTGGTCCACTTGGGAAGGAACTCTTTGAAAAGGAACAGGATGATCTACTCTCGGATCTGAAAGATGTACCAAAAGCAGCTTGTGATCGAAGAATCAATGAGTTTGTAAAACGGGCCCGAGCAGCCAAGATACATGCTTACATTATCAGCCATCTTAAAAAGGAGATGCCTGCTATGATAGGCAAAGCTAAAGCTCAACAAAAGCTCATCGATAATTTGGCAGCTGAATTTGGAAAGGTACAAAGGGAGTTCCATTTACCTCCTGGCGATTTTCCAAATGTAGAGTTTTTCAGAGAGAGATTGAGTGGTTACAATATTGATAAGTTTGAAAAATTGAAACCAAAAATGACACAAGCAGTTGATGACATGTTAGCTTACGACATTCCTAATCTCTTGAAGAATTTTAGGAATCCCTATGATTAA

>Glyma.02g294200.2 sequence-type=CDS polypeptide=Glyma.02g294200.2.p locus=Glyma.02g294200 ID=Glyma.02g294200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGTTCGACCCGATCCCAATCGGTTCGTGCTCCAAAGAACACCAGATGATCTATAAGGAGTGGTTCAATTACGCTGATTCAGATAGCGATGGCCGCATTACGGGGAGTGATGCCACCAAGTTTTTCGCCATGTCCAATTTGCCCCGCGAAGATCTTAAGCAGGTGTGGGCTATTGCAGATTCAAAGCGACAAGGATATCTTGGTTTCACTGAATTTATCATTGCTATGCAGCTAGTTTCTTTGGCTCAATCTGGGCACTCAATAACACCCGATCTGCTGACTAGTGATGTTGATTTTACAAATGGAAAACCTCCCTCAATGGAGGGTTTGGACGTATTACTAGTTAAGAAAAAGCATAAACAAAAAGAGGTTGATGCAAATGGTAGTTCTCAATTGCAGCCATCACCATCAAGTAATTGGTTTTCTTCAAAGTCAACAAAAAAGGTGCCTCTTTCCTCTGTGACATCAATAATTGACGGCTTGAAGAGACTCTACATTCAGAAGTTGAAGCCATTAGAAGTTACTTACCGTTTTAATGATTTTGTATCCCCATTACTGACAAATAGTGACTTTGATGCCAAACCAATGGTTATGCTTTTGGGTCAGTACTCAACTGGTAAAACAACATTTATCAAACATCTGCTTAAAAGTAGTTATCCAGGAGCACATATTGGACCTGAGCCAACAACTGATAGGTTTGTTGTTGTCATGTCTGGATCTGATGAGAGAAGCGTTCCTGGAAATACTGTTGCTGTCCAAGCAGACATGCCATTTAGTGGTCTTACAACTTTTGGCACAGCATTTTTGTCAAAATTTGTGTGTTCACAGATGCCTCATCCTCTACTGGAACACATCACATTTGTTGACACTCCGGGAGTTCTATCTGGAGAAAAGCAACGCACACAACGAGCATATGATTTTACGGGTGTAACATCTTGGTTTGCTGCTAAGTGTGATTTGATTCTCCTTCTGTTTGATCCTCACAAACTTGACATCAGTGATGAGTTCAATCGTGTGATATCATCCTTACGGGGGCATGATGACAAAATCCGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACCCAACAATTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAGACACCTGAAGTAATGCGAGTGTATATTGGCTCCTTCAATGACAAGCCTGTAAATGATGCTGCCACTGGTCCACTTGGGAAGGAACTCTTTGAAAAGGAACAGGATGATCTACTCTCGGATCTGAAAGATGTACCAAAAGCAGCTTGTGATCGAAGAATCAATGAGTTTGTAAAACGGGCCCGAGCAGCCAAGATACATGCTTACATTATCAGCCATCTTAAAAAGGAGATGCCTGCTATGATAGGCAAAGCTAAAGCTCAACAAAAGCTCATCGATAATTTGGCAGCTGAATTTGGAAAGGTACAAAGGGAGTTCCATTTACCTCCTGGCGATTTTCCAAATGTAGAGTTTTTCAGAGAGAGATTGAGTGGTTACAATATTGATAAGTTTGAAAAATTGAAACCAAAAATGACACAAGCAGTTGATGACATGTTAGCTTACGACATTCCTAATCTCTTGAAGAATTTTAGGAATCCCTATGATTAA

Predicted protein sequences of Glyma.02g294200

Limit To All Plant Sequences

>Glyma.02g294200.1.p sequence-type=predicted peptide transcript=Glyma.02g294200.1 locus=Glyma.02g294200 ID=Glyma.02g294200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEFDPIPIGSCSKEHQMIYKEWFNYADSDSDGRITGSDATKFFAMSNLPREDLKQVWAIADSKRQGYLGFTEFIIAMQLVSLAQSGHSITPDLLTSDVDFTNGKPPSMEGLDVLLVKKKHKQKEVDANAISNNAGSSQLQPSPSSNWFSSKSTKKVPLSSVTSIIDGLKRLYIQKLKPLEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLKSSYPGAHIGPEPTTDRFVVVMSGSDERSVPGNTVAVQADMPFSGLTTFGTAFLSKFVCSQMPHPLLEHITFVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFNRVISSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLKTPEVMRVYIGSFNDKPVNDAATGPLGKELFEKEQDDLLSDLKDVPKAACDRRINEFVKRARAAKIHAYIISHLKKEMPAMIGKAKAQQKLIDNLAAEFGKVQREFHLPPGDFPNVEFFRERLSGYNIDKFEKLKPKMTQAVDDMLAYDIPNLLKNFRNPYD*

>Glyma.02g294200.2.p sequence-type=predicted peptide transcript=Glyma.02g294200.2 locus=Glyma.02g294200 ID=Glyma.02g294200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEFDPIPIGSCSKEHQMIYKEWFNYADSDSDGRITGSDATKFFAMSNLPREDLKQVWAIADSKRQGYLGFTEFIIAMQLVSLAQSGHSITPDLLTSDVDFTNGKPPSMEGLDVLLVKKKHKQKEVDANGSSQLQPSPSSNWFSSKSTKKVPLSSVTSIIDGLKRLYIQKLKPLEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLKSSYPGAHIGPEPTTDRFVVVMSGSDERSVPGNTVAVQADMPFSGLTTFGTAFLSKFVCSQMPHPLLEHITFVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFNRVISSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLKTPEVMRVYIGSFNDKPVNDAATGPLGKELFEKEQDDLLSDLKDVPKAACDRRINEFVKRARAAKIHAYIISHLKKEMPAMIGKAKAQQKLIDNLAAEFGKVQREFHLPPGDFPNVEFFRERLSGYNIDKFEKLKPKMTQAVDDMLAYDIPNLLKNFRNPYD*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain