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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G26850.1 | AT | mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase | JGI | N/A | IEA |
| GO:0006006 | GO-bp | glucose metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0080048 | GO-mf | GDP-D-glucose phosphorylase activity | EnsemblGenomes | N/A | IEA |
| KOG2720 | KOG | Predicted hydrolase (HIT family) | JGI | N/A | IEA |
| PTHR20884 | Panther | FAMILY NOT NAMED | JGI | N/A | IEA |
| PTHR20884:SF3 | Panther | JGI | N/A | IEA | |
| PWY-882 | SoyCyc9 | L-ascorbate biosynthesis I (L-galactose pathway) | Plant Metabolic Network | ISS | |
| PWY4FS-12 | SoyCyc9 | VTC2 cycle | Plant Metabolic Network | ISS | |
| PWY4FS-13 | SoyCyc9 | extended VTC2 cycle | Plant Metabolic Network | ISS | |
| GN7V-60188 | SoyCyc9-rxn | GDP-L-galactose:mannose-1-phosphate guanylyltransferase | Plant Metabolic Network | ISS |
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Glyma.02g292800 not represented in the dataset |
Glyma.02g292800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.14g021800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma02g46230 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.02g292800.1 sequence-type=CDS polypeptide=Glyma.02g292800.1.p locus=Glyma.02g292800 ID=Glyma.02g292800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGATGCTCAAAATCAAGAGGGTTCCCACTGTCGTTTCCAACTTCCAAAAAGACGACGCTGCAGACTCTCCTCGTCCCGTCGGAGGTTGTGGTCGGAATTGCCTCAAAGCTTGTTGCATTCCAGATGCAAAGCTGCCTTTGTATGGTTTCAAGAAGGCTAATATTGGGAAGGATTTGGCCCTGCATGCATGCGCCGGGGAGCCTCCCCTCGCATTCCTCGACTCTCTTCTTCTTGGAGAGTGGGAAGATCGCATGCAGAGAGGACTTTTTCGCTATGATGTTACCGCCTGTGAAACCAAGGTGATTCCTGGTGAATATGGTTTCGTTGCCCAGCTTAACGAGGGTCGTCACCTCAAGAAGAGGCCAACTGAGTTCCGAGTTGATAAGGTCCTTCAACCCTTTGATGAAAACAAATTCAACTTTACCAAAGTCGGGCAAGAAGAGGTCCTCTTCCAATTTGAAGCTAGCGAGGATGGACAAGTCCAGTTCTTTCCAAATGCTCCAGTTGATGTTGACAATTCTCCCAGCTTTGTTGCCATCAATGTCAGTCCTATTGAGTATGGGCATGTTTTGCTGATTCCGCGCATATTTGAGTGTTTGCCTCAAAGGATTGACCGTGAGAGCTTCCTCCTTGCACTTCAGATGGCAGTGGAAGCCGATAATCCTTATTTTCGATTGGGTTACAACAGCTTGGGTGCTTTTGCAACTATCAACCATCTTCACTTCCAGGCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAGAATTGCAAGTGTAAATGGTGGGGTGAAGATATCTGAACTGTTGAAGTATCCGGTTAGAGGCTTTGTCTTTGAGGGCGGCGAAATGCTGGAAGATCTATCAAACGTTGTTTCAGATGCATGTATATGTCTTCAGAACAACAACATACCTTTCAATGTTCTTATCTCTGACTGTGGAAAGCAAGTGTATCTGTTACCACAGTGTTATGCAGAGAAACAAGCTCTTGGAGAAGTGAATGCTGAGCTTCTTGACACCCAAGTGAATCCTGCTGTGTGGGAAATTAGTGGACACATGGTTTTAAAGAGGAGGAAGGATTATGATGAGGCGTCTGAAGGCAATGCTTGGAGGCTTCTTGCTGAGGTGTCCCTTTCTCAAGAGAGGTTTCAAGAAGTCAATGATCTTGTTTTTGAAGCCATTGGCTGTGGTGAATTGGAGGATGTCAATGTTCAAAGTGTCAAAAAAGAAGTTGATGCAGTCAGCACAAGCGAACACCCTACTGTGGTGGTGGTGGCTGGTTCACAAGAATGTGTGGTTCTACAGTAA
>Glyma.02g292800.1.p sequence-type=predicted peptide transcript=Glyma.02g292800.1 locus=Glyma.02g292800 ID=Glyma.02g292800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MMLKIKRVPTVVSNFQKDDAADSPRPVGGCGRNCLKACCIPDAKLPLYGFKKANIGKDLALHACAGEPPLAFLDSLLLGEWEDRMQRGLFRYDVTACETKVIPGEYGFVAQLNEGRHLKKRPTEFRVDKVLQPFDENKFNFTKVGQEEVLFQFEASEDGQVQFFPNAPVDVDNSPSFVAINVSPIEYGHVLLIPRIFECLPQRIDRESFLLALQMAVEADNPYFRLGYNSLGAFATINHLHFQAYYLALPFPIEKAPTKRIASVNGGVKISELLKYPVRGFVFEGGEMLEDLSNVVSDACICLQNNNIPFNVLISDCGKQVYLLPQCYAEKQALGEVNAELLDTQVNPAVWEISGHMVLKRRKDYDEASEGNAWRLLAEVSLSQERFQEVNDLVFEAIGCGELEDVNVQSVKKEVDAVSTSEHPTVVVVAGSQECVVLQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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