Glyma.02g291000

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Report for Sequence Feature Glyma.02g291000

Feature Type:	gene_model
Chromosome:	Gm02
Start:	47048477
stop:	47053231
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.02g291000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G50670.1	AT	OTU-like cysteine protease family protein	JGI	N/A	IEA
GO:0016579	GO-bp	protein deubiquitination	EnsemblGenomes	N/A	IEA
GO:0030433	GO-bp	ubiquitin-dependent ERAD pathway	EnsemblGenomes	N/A	IEA
GO:0030968	GO-bp	endoplasmic reticulum unfolded protein response	EnsemblGenomes	N/A	IEA
GO:1904153	GO-bp	negative regulation of retrograde protein transport, ER to cytosol	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0005829	GO-cc	cytosol	EnsemblGenomes	N/A	IEA
GO:0004843	GO-mf	thiol-dependent ubiquitin-specific protease activity	EnsemblGenomes	N/A	IEA
GO:1904265	GO-mf	ubiquitin-specific protease activity involved in negative regulation of retrograde protein transport, ER to cytosol	EnsemblGenomes	N/A	IEA
PTHR13312	Panther	HIV-INDUCED PROTEIN-7-LIKE PROTEASE	JGI	N/A	IEA
PF02338	PFAM	OTU-like cysteine protease	JGI	N/A	IEA

Expression Patterns of Glyma.02g291000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g291000 not represented in the dataset	Glyma.02g291000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.02g291000

Paralog	Evidence	Comments
Glyma.14g023700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g291000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma02g46040	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.02g291000

Limit To All Plant Sequences

>Glyma.02g291000.2 sequence-type=transcript locus=Glyma.02g291000 ID=Glyma.02g291000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAGAGGAAGGTGTTGTTGTGGTGTATTCCTTGCTTTGGCATGGAAGAGAGTAGTGGGGCATGCCGAGGAAAAGGACGGTGGCATCCGAACGAAAGCGGTAGCAAAATCCGTTTAAGTTAATTCTTTTGACGCATACAAAGGAAAACATTTTCTTATTCAAATACTcaccaataccaaatccaacacccacacccacaccaataacaaGCTTGGTTGGTACTTATCTACAATCTGCATCATGGAAGGTGTTATTCTGAGAAGGGTCATTCCTTCGGATAACAGTTGCCTCTTCAATGCAGTTGGGTAAGCAAAGCAATGGAATACAACCCCCTTTTAGTTTCATGTTGTATCGGTATTACTGCTACTTGTACAAATGATTCCACTTGTTATGTTCTTTCTTCTTTTTTTTGTGCTTAATCATTTCAGATATGTTATGGATCATGACAAAAAGAAAGCTGCTGAGTTGAGACAGGTTATAGCAGCAACAGTAGCAAGTGATCCACAGAAATATTGTGAAGCATTTCTTGGGAAGCCAAACGCTGAGTATTGTAACTGGATTCTTGACTCGGAGAAGTGGGGAGGTGCAATTGAACTTTCAATATTAGCAGATTATTATGGACGTGAAATTGCAGCATATGATATCCAAACAACTCGATGTGATTTGTATGGTCAGGAAAGTAACTATTCTGAAAGAGTGATGCTGATTTATGATGGTCTCCACTACGATGCATTAGTGATGTCTCCCTTTGAGGAAGCTCCTGAGGAGTTTGATCAGACCATATTTGCTGTACAGAAAAACAGAAGCATTGGACCTGTTGAGGGGCTTGCTCTAACTTTTGTGAAGGACCAGCAGAGGAAACGGAGTTACACTGACACATCCAACTTCACTCTCCGCTGTGGGGTATGCCAAATTGGAGTAATTGGTGAGAAGGAGGCAGTGGAGCATGCACAAGCAACTGGTCATGTTAACTTCCAAGAGTACAGATAATGCACTCCGTTGATTTGAATGGGATACAAATTCATGTGTAATCTCCGTTGATTTGAATGAGCATCATCGATAGAAGGTAGTTGCTTTGTTGCAGACAAAAAAAACTGAATAATTTCTGCATGAGAATTGTTGTGGCAACTTGTGTTGTAATAATAGTTCCTTGGTCTTGTTCCACAATGACTGTGATTATAAGAAACTCACCTCTAGTGACTCTAGTTGCAGACTAGATAAAGAAATTAGTAATCAATTATTTTTTTTATATTTCACTTCCTTTATATAACTTTTAGTGCAATAACTATGTAAACTCACGCCACTATTTTAACCTTGACGAGTGTTGAATGCTTTTGATACTATATAAAAATCCCTTTTATTGATAGTATATAA

>Glyma.02g291000.3 sequence-type=transcript locus=Glyma.02g291000 ID=Glyma.02g291000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAGAGGAAGGTGTTGTTGTGGTGTATTCCTTGCTTTGGCATGGAAGAGAGTAGTGGGGCATGCCGAGGAAAAGGACGGTGGCATCCGAACGAAAGCGGTAGCAAAATCCGTTTAAGTTAATTCTTTTGACGCATACAAAGGAAAACATTTTCTTATTCAAATACTcaccaataccaaatccaacacccacacccacaccaataacaaGCTTGGTTGGTACTTATCTACAATCTGCATCATGGAAGGTGTTATTCTGAGAAGGGTCATTCCTTCGGATAACAGTTGCCTCTTCAATGCAGTTGGATATGTTATGGATCATGACAAAAAGAAAGCTGCTGAGTTGAGACAGGTTATAGCAGCAACAGTAGCAAGTGATCCACAGAAATATTGTGAAGCATTTCTTGGGAAGCCAAACGCTGAGTATTGTAACTGGATTCTTGACTCGGAGAAGTGGGGAGGTGCAATTGAACTTTCAATATTAGCAGATTATTATGGACGTGAAATTGCAGCATATGATATCCAAACAACTCGATGTGATTTGTATGGTCAGGAAAGTAACTATTCTGAAAGAGTGATGCTGATTTATGATGGTCTCCACTACGATGCATTAGTGATGTCTCCCTTTGAGGAAGCTCCTGAGGAGTTTGATCAGACCATATTTGCTGTACAGAAAAACAGAAGCATTGGACCTGTTGAGGGGCTTGCTCTAACTTTTGTGAAGGACCAGCAGAGGAAACGGAGTTACACTGACACATCCAACTTCACTCTCCGCTGTGGGGTATGCCAAATTGGAGTAATTGGTGAGAAGGAGGCAGTGGAGCATGCACAAGCAACTGGTCATGTTAACTTCCAAGAGTACAGATAATGCACTCCGTTGATTTGAATGGGATACAAATTCATGTGTAATCTCCGTTGATTTGAATGAGCATCATCGATAGAAGGTAGTTGCTTTGTTGCAGACAAAAAAAACTGAATAATTTCTGCATGAGAATTGTTGTGGCAACTTGTGTTGTAATAATAGTTCCTTGGTCTTGTTCCACAATGACTGTGATTATAAGAAACTCACCTCTAGTGACTCTAGTTGCAGACTAGATAAAGAAATTAGTAATCAATTATTTTTTTTATATTTCACTTCCTTTATATAACTTTTAGTGCAATAACTATGTAAACTCACGCCACTATTTTAACCTTGACGAGTGTTGAATGCTTTTGATACTATATAAAAATCCCTTTTATTGATAGTATATAA

>Glyma.02g291000.4 sequence-type=transcript locus=Glyma.02g291000 ID=Glyma.02g291000.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAGAGGAAGGTGTTGTTGTGGTGTATTCCTTGCTTTGGCATGGAAGAGAGTAGTGGGGCATGCCGAGGAAAAGGACGGTGGCATCCGAACGAAAGCGGTAGCAAAATCCGTTTAAGTTAATTCTTTTGACGCATACAAAGGAAAACATTTTCTTATTCAAATACTcaccaataccaaatccaacacccacacccacaccaataacaaGCTTGGTTGGTACTTATCTACAATCTGCATCATGGAAGGTGTTATTCTGAGAAGGGTCATTCCTTCGGATAACAGTTGCCTCTTCAATGCAGTTGGATATGTTATGGATCATGACAAAAAGAAAGCTGCTGAGTTGAGACAGGTTATAGCAGCAACAGTAGCAAGTGATCCACAGAAATATTGTGAAGCATTTCTTGGGAAGCCAAACGCTGAGTATTGTAACTGGATTCTTGACTCGGAGAAGTGGGGAGGTGCAATTGAACTTTCAATATTAGCAGATTATTATGGACGTGAAATTGCAGCATATGATATCCAAACAACTCGATGTGATTTGTATGGTCAGGAAAGTAACTATTCTGAAAGAGTGATGCTGATTTATGATGGTCTCCACTACGATGCATTAGTGATGTCTCCCTTTGAGGAAGCTCCTGAGGAGTTTGATCAGACCATATTTGCTGTACAGAAAAACAGAAGCATTGGACCTGTTGAGGGGCTTGCTCTAACTTTTGTGAAGGACCAGCAGAGGAAACGGAGTTACACTGACACATCCAACTTCACTCTCCGCTGTGGGGTATGCCAAATTGGAGTAATTGGAGGCAGTGGAGCATGCACAAGCAACTGGTCATGTTAACTTCCAAGAGTACAGATAATGCACTCCGTTGATTTGAATGGGATACAAATTCATGTGTAATCTCCGTTGATTTGAATGAGCATCATCGATAGAAGGTAGTTGCTTTGTTGCAGACAAAAAAAACTGAATAATTTCTGCATGAGAATTGTTGTGGCAACTTGTGTTGTAATAATAGTTCCTTGGTCTTGTTCCACAATGACTGTGATTATAAGAAACTCACCTCTAGTGACTCTAGTTGCAGACTAGATAAAGAAATTAGTAATCAATTATTTTTTTTATATTTCACTTCCTTTATATAACTTTTAGTGCAATAACTATGTAAACTCACGCCACTATTTTAACCTTGACGAGTGTTGAATGCTTTTGATACTATATAAAAATCCCTTTTATTGATAGTATATAA

Coding sequences of Glyma.02g291000

Limit To All Plant Sequences

>Glyma.02g291000.1 sequence-type=CDS polypeptide=Glyma.02g291000.1.p locus=Glyma.02g291000 ID=Glyma.02g291000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGAGAGTAGTGGGGCATGCCGAGGAAAAGGACGGTGGCATCCGAACGAAAGCGGTTGGTACTTATCTACAATCTGCATCATGGAAGGTGTTATTCTGAGAAGGGTCATTCCTTCGGATAACAGTTGCCTCTTCAATGCAGTTGGATATGTTATGGATCATGACAAAAAGAAAGCTGCTGAGTTGAGACAGGTTATAGCAGCAACAGTAGCAAGTGATCCACAGAAATATTGTGAAGCATTTCTTGGGAAGCCAAACGCTGAGTATTGTAACTGGATTCTTGACTCGGAGAAGTGGGGAGGTGCAATTGAACTTTCAATATTAGCAGATTATTATGGACGTGAAATTGCAGCATATGATATCCAAACAACTCGATGTGATTTGTATGGTCAGGAAAGTAACTATTCTGAAAGAGTGATGCTGATTTATGATGGTCTCCACTACGATGCATTAGTGATGTCTCCCTTTGAGGAAGCTCCTGAGGAGTTTGATCAGACCATATTTGCTGTACAGAAAAACAGAAGCATTGGACCTGTTGAGGGGCTTGCTCTAACTTTTGTGAAGGACCAGCAGAGGAAACGGAGTTACACTGACACATCCAACTTCACTCTCCGCTGTGGGGTATGCCAAATTGGAGTAATTGGTGAGAAGGAGGCAGTGGAGCATGCACAAGCAACTGGTCATGTTAACTTCCAAGAGTACAGATAA

>Glyma.02g291000.2 sequence-type=CDS polypeptide=Glyma.02g291000.2.p locus=Glyma.02g291000 ID=Glyma.02g291000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATTCCACTTGTTATGTTCTTTCTTCTTTTTTTTGTGCTTAATCATTTCAGATATGTTATGGATCATGACAAAAAGAAAGCTGCTGAGTTGAGACAGGTTATAGCAGCAACAGTAGCAAGTGATCCACAGAAATATTGTGAAGCATTTCTTGGGAAGCCAAACGCTGAGTATTGTAACTGGATTCTTGACTCGGAGAAGTGGGGAGGTGCAATTGAACTTTCAATATTAGCAGATTATTATGGACGTGAAATTGCAGCATATGATATCCAAACAACTCGATGTGATTTGTATGGTCAGGAAAGTAACTATTCTGAAAGAGTGATGCTGATTTATGATGGTCTCCACTACGATGCATTAGTGATGTCTCCCTTTGAGGAAGCTCCTGAGGAGTTTGATCAGACCATATTTGCTGTACAGAAAAACAGAAGCATTGGACCTGTTGAGGGGCTTGCTCTAACTTTTGTGAAGGACCAGCAGAGGAAACGGAGTTACACTGACACATCCAACTTCACTCTCCGCTGTGGGGTATGCCAAATTGGAGTAATTGGTGAGAAGGAGGCAGTGGAGCATGCACAAGCAACTGGTCATGTTAACTTCCAAGAGTACAGATAA

>Glyma.02g291000.3 sequence-type=CDS polypeptide=Glyma.02g291000.3.p locus=Glyma.02g291000 ID=Glyma.02g291000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGGTGTTATTCTGAGAAGGGTCATTCCTTCGGATAACAGTTGCCTCTTCAATGCAGTTGGATATGTTATGGATCATGACAAAAAGAAAGCTGCTGAGTTGAGACAGGTTATAGCAGCAACAGTAGCAAGTGATCCACAGAAATATTGTGAAGCATTTCTTGGGAAGCCAAACGCTGAGTATTGTAACTGGATTCTTGACTCGGAGAAGTGGGGAGGTGCAATTGAACTTTCAATATTAGCAGATTATTATGGACGTGAAATTGCAGCATATGATATCCAAACAACTCGATGTGATTTGTATGGTCAGGAAAGTAACTATTCTGAAAGAGTGATGCTGATTTATGATGGTCTCCACTACGATGCATTAGTGATGTCTCCCTTTGAGGAAGCTCCTGAGGAGTTTGATCAGACCATATTTGCTGTACAGAAAAACAGAAGCATTGGACCTGTTGAGGGGCTTGCTCTAACTTTTGTGAAGGACCAGCAGAGGAAACGGAGTTACACTGACACATCCAACTTCACTCTCCGCTGTGGGGTATGCCAAATTGGAGTAATTGGTGAGAAGGAGGCAGTGGAGCATGCACAAGCAACTGGTCATGTTAACTTCCAAGAGTACAGATAA

>Glyma.02g291000.4 sequence-type=CDS polypeptide=Glyma.02g291000.4.p locus=Glyma.02g291000 ID=Glyma.02g291000.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGGTGTTATTCTGAGAAGGGTCATTCCTTCGGATAACAGTTGCCTCTTCAATGCAGTTGGATATGTTATGGATCATGACAAAAAGAAAGCTGCTGAGTTGAGACAGGTTATAGCAGCAACAGTAGCAAGTGATCCACAGAAATATTGTGAAGCATTTCTTGGGAAGCCAAACGCTGAGTATTGTAACTGGATTCTTGACTCGGAGAAGTGGGGAGGTGCAATTGAACTTTCAATATTAGCAGATTATTATGGACGTGAAATTGCAGCATATGATATCCAAACAACTCGATGTGATTTGTATGGTCAGGAAAGTAACTATTCTGAAAGAGTGATGCTGATTTATGATGGTCTCCACTACGATGCATTAGTGATGTCTCCCTTTGAGGAAGCTCCTGAGGAGTTTGATCAGACCATATTTGCTGTACAGAAAAACAGAAGCATTGGACCTGTTGAGGGGCTTGCTCTAACTTTTGTGAAGGACCAGCAGAGGAAACGGAGTTACACTGACACATCCAACTTCACTCTCCGCTGTGGGGTATGCCAAATTGGAGTAATTGGAGGCAGTGGAGCATGCACAAGCAACTGGTCATGTTAA

Predicted protein sequences of Glyma.02g291000

Limit To All Plant Sequences

>Glyma.02g291000.1.p sequence-type=predicted peptide transcript=Glyma.02g291000.1 locus=Glyma.02g291000 ID=Glyma.02g291000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEESSGACRGKGRWHPNESGWYLSTICIMEGVILRRVIPSDNSCLFNAVGYVMDHDKKKAAELRQVIAATVASDPQKYCEAFLGKPNAEYCNWILDSEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQESNYSERVMLIYDGLHYDALVMSPFEEAPEEFDQTIFAVQKNRSIGPVEGLALTFVKDQQRKRSYTDTSNFTLRCGVCQIGVIGEKEAVEHAQATGHVNFQEYR*

>Glyma.02g291000.2.p sequence-type=predicted peptide transcript=Glyma.02g291000.2 locus=Glyma.02g291000 ID=Glyma.02g291000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIPLVMFFLLFFVLNHFRYVMDHDKKKAAELRQVIAATVASDPQKYCEAFLGKPNAEYCNWILDSEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQESNYSERVMLIYDGLHYDALVMSPFEEAPEEFDQTIFAVQKNRSIGPVEGLALTFVKDQQRKRSYTDTSNFTLRCGVCQIGVIGEKEAVEHAQATGHVNFQEYR*

>Glyma.02g291000.3.p sequence-type=predicted peptide transcript=Glyma.02g291000.3 locus=Glyma.02g291000 ID=Glyma.02g291000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEGVILRRVIPSDNSCLFNAVGYVMDHDKKKAAELRQVIAATVASDPQKYCEAFLGKPNAEYCNWILDSEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQESNYSERVMLIYDGLHYDALVMSPFEEAPEEFDQTIFAVQKNRSIGPVEGLALTFVKDQQRKRSYTDTSNFTLRCGVCQIGVIGEKEAVEHAQATGHVNFQEYR*

>Glyma.02g291000.4.p sequence-type=predicted peptide transcript=Glyma.02g291000.4 locus=Glyma.02g291000 ID=Glyma.02g291000.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEGVILRRVIPSDNSCLFNAVGYVMDHDKKKAAELRQVIAATVASDPQKYCEAFLGKPNAEYCNWILDSEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQESNYSERVMLIYDGLHYDALVMSPFEEAPEEFDQTIFAVQKNRSIGPVEGLALTFVKDQQRKRSYTDTSNFTLRCGVCQIGVIGGSGACTSNWSC*

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