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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G06570.1 | AT | phytoene desaturation 1 | JGI | N/A | IEA |
| GO:0006572 | GO-bp | tyrosine catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0009072 | GO-bp | aromatic amino acid family metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0003868 | GO-mf | 4-hydroxyphenylpyruvate dioxygenase activity | EnsemblGenomes | N/A | IEA |
| GO:0016701 | GO-mf | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | EnsemblGenomes | N/A | IEA |
| KOG0638 | KOG | 4-hydroxyphenylpyruvate dioxygenase | JGI | N/A | IEA |
| PTHR11959 | Panther | 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE | JGI | N/A | IEA |
| PF00903 | PFAM | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily | JGI | N/A | IEA |
| PWY-1422 | SoyCyc9 | vitamin E biosynthesis (tocopherols) | Plant Metabolic Network | ISS | |
| PWY-1581 | SoyCyc9 | plastoquinol-9 biosynthesis I | Plant Metabolic Network | ISS | |
| PWY-5864 | SoyCyc9 | superpathway of plastoquinol biosynthesis | Plant Metabolic Network | ISS | |
| PWY-7432 | SoyCyc9 | L-phenylalanine biosynthesis III (cytosolic, plants) | Plant Metabolic Network | ISS | |
| GN7V-55830 | SoyCyc9-rxn | 4-hydroxyphenylpyruvate dioxygenase | Plant Metabolic Network | ISS |
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Glyma.02g284600 not represented in the dataset |
Glyma.02g284600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.14g030400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma02g45400 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.02g284600.1 sequence-type=CDS polypeptide=Glyma.02g284600.1.p locus=Glyma.02g284600 ID=Glyma.02g284600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCAGGAAGAGGAGCGTGAGAGAAGAGAGTCCAGCAATGTCCAAACCGGGTTTAAGCTCGTTGGTTTCACAAACTTCGTCCGAACCAACCCTAAATCGGACCGCTTTCAAGTTAACCGCTTCCACCACATCGGCTTCTGGTGCACCGATGCTACCAACTCTTCCCGCCGATTCTCTTGGGGACTTGGAATGCCTATTGTGGCAAAATCCGATCTCTCCACCGGAAACCAAATCCACGCCTCCTACCTCCTCCGCTCCGGTGACCTCTCCTTCCTCTTCTCCGCTGCCACCGGAGGCGCCTCCACCGCCTCCCTTCCAACCTTCGACGCCGCCACCTGCCTCGCCTTCGCCGCCAAGCACGGCTTCGGCGTCCGTGCCATCGCTTTGGAGGTAGCCGACGCGGAAGCCGCCTTCAACGCCAGCGTCGCCAACGGCGCCGAGCCGGCGTCTCCACCGGCTCTCCTCGACGGCCGCACCGGCTTCGCGGAGGTACGCCTCTACGGCGACGTCGTGCTCCGCTACGTAAGCCACAAGGACGCCGCGCCGCGGGCGGATCCGTCGCGGTGGTTCCTGCCGGGATTCGAGGCCGCGTCGTGGTCGTTTCCGGAGCTGGACTACGGGATTCGGCGGCTGGACCACGCCGTCGGGAACGTGCCCGAACTGGCGCCGGCGGTCAGGTACCTGAAAGGCTTCAGCGGATTCCACGAGTTCGCGGAGTTCACCGCGGAGGACGTGGGAACGAGCGAGAGCGGGTTGAACTCGGTGTTTCTGGCGAACAACTCGGAGACGGTGTTGCTGGCGCTGAACGAGCCTGTTTACGGAACGAAACGGAAGAGCCAGATTGAGACTTATTTGGAACACAACGAAGGTGCTGGTGTGCAGCATCTTGCGCTTGTTACTCACGACATTTTCACCACTCTGAGAGAGATGAGGAAGCGAAGTTTCCTTGGTGGATTTGAGTTCACGCCTTCGCCTACTCCCACCTATTACGCCAACCTTCACAAGCGTGCCGGTGATGTGTTGACCACAGAGATGATCAGGGCACTCTGCTTCAGAGGATTGGGTGCATGGTGGAGGATGAGGAAGGGAAGGCGTACCAGAAGGGTGCATGTGGGGGTTTTGGGAAAGGCAATATTTCCCAACTTGAAGAATATGAGAAGACTTTGGAAGCTAAAAGAACTCAGAGTGATCTCAGCTCTCTGCTTAAAAAAGTTCCGTTGCCGGGAATCGAACCCGGGTCTCCTGGGTGAAAGCCAGATATCCTAA
>Glyma.02g284600.1.p sequence-type=predicted peptide transcript=Glyma.02g284600.1 locus=Glyma.02g284600 ID=Glyma.02g284600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MQEEERERRESSNVQTGFKLVGFTNFVRTNPKSDRFQVNRFHHIGFWCTDATNSSRRFSWGLGMPIVAKSDLSTGNQIHASYLLRSGDLSFLFSAATGGASTASLPTFDAATCLAFAAKHGFGVRAIALEVADAEAAFNASVANGAEPASPPALLDGRTGFAEVRLYGDVVLRYVSHKDAAPRADPSRWFLPGFEAASWSFPELDYGIRRLDHAVGNVPELAPAVRYLKGFSGFHEFAEFTAEDVGTSESGLNSVFLANNSETVLLALNEPVYGTKRKSQIETYLEHNEGAGVQHLALVTHDIFTTLREMRKRSFLGGFEFTPSPTPTYYANLHKRAGDVLTTEMIRALCFRGLGAWWRMRKGRRTRRVHVGVLGKAIFPNLKNMRRLWKLKELRVISALCLKKFRCRESNPGLLGESQIS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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