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Report for Sequence Feature Glyma.02g283900

Feature Type:gene_model
Chromosome:Gm02
Start:46550397
stop:46551943
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g283900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G30860.1AT glutathione S-transferase PHI 9 JGI N/AIEA
GO:0006749GO-bp glutathione metabolic process EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0004364GO-mf glutathione transferase activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
KOG0867 KOG Glutathione S-transferase JGI N/AIEA
PTHR11260Panther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING JGI N/AIEA
PTHR11260:SF55Panther JGI N/AIEA
PF00043PFAM Glutathione S-transferase, C-terminal domain JGI N/AIEA
PF02798PFAM Glutathione S-transferase, N-terminal domain JGI N/AIEA
GN7V-56049SoyCyc9-rxn glutathione transferase Plant Metabolic Network ISS

Expression Patterns of Glyma.02g283900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g283900 not represented in the dataset
Glyma.02g283900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g283900
ParalogEvidenceComments
Glyma.14g031000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g283900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g45336 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g283900
>Glyma.02g283900.1 sequence-type=CDS polypeptide=Glyma.02g283900.1.p locus=Glyma.02g283900 ID=Glyma.02g283900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTAGTGAAGGTTTACGGTCCCCACTGTGCTTCCACAAAGCGGGTGCTGGTTTGTCTGGTTGAGAAGGAAGTCGAATTTGATGTTGTCCCTGTTGATGTCACTAAGGGGGAGCAGAAGGATCCTGAGTACCTCAAATTACAGCCCTTTGGAGTTGTTCCTGTCATCAAAGATGGAGACTATACCTTATATGAATCTCGTGCTATAATAAGGTATTATGCAGAAAAATACAGATCTCAAGGGGCTGAGTTGCTGGGGAAGACAATAGAAGAAAGGGGTCTTGTGGAGCAATGGCTAGAAGTTGAAGCACACAACTTTCACCCACCAGCCTACAACTTGTGTCTTCATGGTTTGTTTGGTTCACTATTTGGTGTGACTCCAGATCCCAAGGTGATTGAGGAGAGTGAAGCAAAGCTGGTGCAGGTGTTGAACATTTATGAGGAGAGGCTGTCAAAGACTAAGTATTTGGCTGGGGATTTCTTCAGCATTGCTGATATTAGCCACCTTCCATTTCTTGATTATGTTGTGAACAATATGGAGAAAAAGTATTTGTTAAAGGAGAGGAAGCATGTGGGTGCCTGGTGGGATGACATAAGCAGTAGACCATCATGGAACAAGGTTCTCCAGCTTTACCGAGCCCCAATCTAG
Predicted protein sequences of Glyma.02g283900
>Glyma.02g283900.1.p sequence-type=predicted peptide transcript=Glyma.02g283900.1 locus=Glyma.02g283900 ID=Glyma.02g283900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVVKVYGPHCASTKRVLVCLVEKEVEFDVVPVDVTKGEQKDPEYLKLQPFGVVPVIKDGDYTLYESRAIIRYYAEKYRSQGAELLGKTIEERGLVEQWLEVEAHNFHPPAYNLCLHGLFGSLFGVTPDPKVIEESEAKLVQVLNIYEERLSKTKYLAGDFFSIADISHLPFLDYVVNNMEKKYLLKERKHVGAWWDDISSRPSWNKVLQLYRAPI*






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