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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G27150.1 | AT | abscisic aldehyde oxidase 3 | JGI | N/A | IEA |
| GO:0022900 | GO-bp | electron transport chain | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0005506 | GO-mf | iron ion binding | EnsemblGenomes | N/A | IEA |
| GO:0009055 | GO-mf | electron transfer activity | EnsemblGenomes | N/A | IEA |
| GO:0009055 | GO-mf | electron carrier activity | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| GO:0016614 | GO-mf | oxidoreductase activity, acting on CH-OH group of donors | EnsemblGenomes | N/A | IEA |
| GO:0016903 | GO-mf | oxidoreductase activity, acting on the aldehyde or oxo group of donors | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | JGI | N/A | IEA |
| GO:0050660 | GO-mf | flavin adenine dinucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0051536 | GO-mf | iron-sulfur cluster binding | EnsemblGenomes | N/A | IEA |
| GO:0051536 | GO-mf | iron-sulfur cluster binding | JGI | N/A | IEA |
| GO:0051537 | GO-mf | 2 iron, 2 sulfur cluster binding | EnsemblGenomes | N/A | IEA |
| GO:0071949 | GO-mf | FAD binding | EnsemblGenomes | N/A | IEA |
| KOG0430 | KOG | Xanthine dehydrogenase | JGI | N/A | IEA |
| PTHR11908 | Panther | XANTHINE DEHYDROGENASE | JGI | N/A | IEA |
| PTHR11908:SF15 | Panther | JGI | N/A | IEA | |
| PF00111 | PFAM | 2Fe-2S iron-sulfur cluster binding domain | JGI | N/A | IEA |
| PF00941 | PFAM | FAD binding domain in molybdopterin dehydrogenase | JGI | N/A | IEA |
| PF01315 | PFAM | Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain | JGI | N/A | IEA |
| PF01799 | PFAM | [2Fe-2S] binding domain | JGI | N/A | IEA |
| PF02738 | PFAM | Molybdopterin-binding domain of aldehyde dehydrogenase | JGI | N/A | IEA |
| PF03450 | PFAM | CO dehydrogenase flavoprotein C-terminal domain | JGI | N/A | IEA |
| GN7V-61118 | SoyCyc9-rxn | indole-3-acetaldehyde oxidase | Plant Metabolic Network | ISS |
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Glyma.02g272200 not represented in the dataset |
Glyma.02g272200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.14g045100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma02g43993 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.02g272200.1 sequence-type=CDS polypeptide=Glyma.02g272200.1.p locus=Glyma.02g272200 ID=Glyma.02g272200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAACTGAAGAAGACACCAACAAGTTTGGTTTTTGCTGTTAATGGTGAGAGGTTCGACCTCTCCCACGTTGACCCTTCAACCACTTTACTCGAATTCTTACGCACTCGCACTCGTTTCAAGAGTGTCAAGCTCGGTTGTGGTGAAGGTGGTTGTGGTGCTTGCGTAGTTTTAATCTCCAAATATGATCCTGTGCATGACCAAGTTGAGGATTTTACAGCAAGCTCTTGTCTCACACTACTTTGCAGCATACATGGCTGGTCAATAACGACTAGTGAAGGCATTGGCAATACTAAAGAAGGATTCCACCCAATTCATGAAAGATTTGCAGGATTCCATGCTACTCAATGTGGCTTTTGTACACCTGGAATGTGTGTCTCACTCTATGGAACACTTGTCAATGCTGAAAAAACTAGTTCTCCAAAACCACCAGCTGGGTTCTCTAAAGTAACTGTTACTGAGGCTGAAAAGGCTATTGCAGGAAATCTTTGTCGCTGTACAGGGTATCGAGCAATTGCTGATGTCTGCAAAAGCTTTTCAGCTGATGTTGATATGGAGGATTTGGGTCTCAACTCTTTCTGGAGAAAAGGAGACAGCCAGGACTCAAAGCTTAGTAGGTTGCCTCAGTATGACCATACTCAATCAATTAGTAGATTTCCTATGTTTTTGAAGGAGATCAAGCATGATGTGTTCTTGGCTTCTGACAAACACAGTTGGCACAGACCTATTAGTCTAACGGAGCTTCAGAACTTACTGAAATTAAACCATGCCAATAGTACCCGGATAAAAATTGTTGTTAGTAATACAGGTATGGGATATTACAAAGATAAAGAAGGTTATGATAAGTACATTGATTTACGGGGAATTTCTGAGCTTTCAAAGATCAGAAAGGATCAAACAGGGATTGAAATTGGAGCAGCAGTGACAATATCTAAAGCTATTCAAACACTGAAGGAAGAGAGCAGAAATGACTTTCTCTCAGATTATGTAATGATACTTGAAAAGATTGCTGACCATATGAGCAAAGTTGCCTCAGGATTTATTCGAAACACGGCCAGTGTTGGTGGCAATTTAGTTATGGCACAAAAGAATAATTTTCCATCAGATATTGCTGTAATACTTCTTGCTGTAGATGCAATGGTTCACATAATGACTGATACACAATTTGAATGGCTGGCATTAGAGGAATTTCTGGAAAGACCAACATTAGGTTTTGAAAGTGTGCTTTTGAGCATTAAAATTCCTAGTTTGGAACTCAATAAAAGTGAATCCTCAGAACCAGAAAGTAGATTCCTCTTTGAAACTTACCGAGCTGCTCCTCGACCCCTTGGAAATGCCCTTCCCTACTTAAATGCTGCTTTCCTGGCTAAGGTGTTTCCATGCAAGGACTCTGGTGGAACTGTGATAGACACTTGTAGGTTGTCTTTTGGTACTTATGGAATTAAGCATGCAATCAGAGCAAAAAATGTTGAGGAATTTTTAGCTGGAAAGCTTTTAAATGTTAGCATTCTGCACGATGCTGTCAACTTGGTTACAGAAACTATTGTACCTAAAGATGATACCTCAAAAACTGCTTACCGTTCAAGTTTGGCAGCTGGTTTTATTTTTCAGTTCTTAAACCCACTTTTCAACACTTCGGTAATAACAAATAGTTATTTGAATGGACATATTAATCTTCCTTTGGTTAAGGATCTTGAATTAAAAGAGAATCAGAAGCAGGTTCATCATGACAATGTTCCAACTTTACTATCATCTGGGAAGCAAGTCCTTGAAGCAGGCTGTGAGTATCATCCTGTTGGGGAGCCAATCATGAAATCTGGAGCTGCGCTACAAGCTTCAGGTGAGGCTGTGTTTGTGGATGACATTCCATCACCATCAAATTGCTTACATGGAGCATACATTCATAGTGCAAAACCTTTAGCAAGGGTAAGGAGTATAAAACTAACGCCTGAATTGCAACTGGATGGAGTGAGGGATATCATTTCAAGTAAAGACATTCCCAATGGTGGGGAAAACATTGGATCTAAGACTATATTTGGTATCGAACCTCTATTTGCAGAAGAGATAACCAGATGTGTTGGTGAACGCCTTGCATTCGTGGTTGCAGATACTCAAAAACTTGCAGATATGGCTGCAAACTCAGCTGTTGTTGATTATGATAATGAAAATCTTGAACCACCTATTTTATCTGTTGAAGATGCTGTTGAAAGATCTAGCTTTTTTGAAGTTCCTCCTTTTCTCTATCCAAAACATGTTGGTGATATATCAAAAGGAATGGCTGAAGCAGATCACAAGATTCTTTCTGCTGAGATGAAACTTGGGTCTCAATACTATTTTTATATGGAGACACAAACTGCACTTGCTGTACCAGATGAAGACAATTGCATTACAGTTTATTCCTCCAGCCAATGCCCCGAGTTTACACATTCTATTATAGCGAGATGTCTAGGAATTCCTGAAAATAATGTCCGTGTAATTACAAGAAGGGTTGGGGGCGGTTTTGGTGGAAAGGCTATAAAAGCCATGCCAGTTGCCATATCATGTGCACTGGCAGCACAGAAATTACAGCGCTCAGTTAGGATGTATCTAAATCGAAGGACAGATATGATAATGGCTGGAGGAAGGCATCCCATGAAGATAACTTACAGTGTTGGGTTTAGGAATGATGGTAAGATTACTGCACTAGACCTTCAGATATTGGTCAATGCAGGGATATATGTGGATATAAGTGCAATTATGCCACATAATATAGTTTGCGCACTTAAAAAGTACGACTGGGGTGCACTATCTTTTGATATAAAGGTATGCAGAACAAACCATCCTAGTAGATCTTCAATGAGGGGCCCTGGGGAGGTGCAGGGATCATTTATTGCTGAAGCTATTATAGAAAATGTTGCAGCTACACTTTCAATGGATGTAGATTCTGTCAGAAGCATTAATCTTCACACATACAAAAGTCTTCAGTCATTCTATGAGTATTCTCATGGTGAACCTTATGAGTATACATTGCCTTCAATATGGAGTAAGTTAGCTGTTTCTGCAAACTATGACCAGAGAAATAAATTGGTGCAAGAGTTTAACAGAGTTAACACCTGGAAGAAAAGGGGAATCTCTCGGGTACCAGTTGTAATTCAACTGATGCTAAGACCAACTCCTGGTAAAGTAAGCATTTTTTCTGACGGGTCTATCGTTGTTGAAGTTGGAGGAATTGAATTGGGTCAAGGTCTTTGGACAAAGGTGAAACAGACGACTGCATATGCTCTCGGTGTTATTCAATGTGATGGAACTGAAGGTCTCTTGGACAAAGTACGGGTTGTGCAATCTGATACGGTGAGCTTGATTCAAGGAGGCTTCACTGCTGGGAGCACTACATCAGAGTCAAGCTGTGAAGCAGTTAGGCTTTGCTGTAATGTCTTGGTAGAGAGGCTAAAGCCTCTTAAGGAAAAGCTGCAGGAGGAAATGGGCTCTATCAAGTGGGAGACCCTTATTCATCAGGCATACATGCAAGCTGTGAACTTATTAGCATCTTCATTTTATGCACCCAGTGTTAACTCCATGAGTTACCTAAATTATGGTGCTGCAGTAAGTGAGGTGGAAATTGATCTTCTGAATGGAGAAACCAGATTTTTGCAAACAGACATTATTTATGATTGTGGACAGAGTCTAAACCCTGCTGTTGATTTAGGACAGATTGAAGGAGCTTTTGTCCAGGGGTTAGGGTTTTTCATGCTTGAAGAATACGAAACAAATCTTGATGGTTTGGTGTTACAAGATGGCACTTGGAACTACAAAATCCCTACGATAGACACTATACCTAAACAGTTTAATGTTCAAATCCTCAACAGTGGGCACCACCAGCAACGTGTTCTCTCTTCAAAAGCTTCTGGCGAGCCGCCATTACTTCTAGCAGCTTCCATTCACTGTGCCACAAGAGCAGCTGTAAAAGAAGCAAGGAAACAGCTTCTTTCATGGAGCAACCAAGATGGAGAAGATTCAACATTTCAGTTGGGAGTCCCTGCAACCATGCCTGTGGTCAAGGAACTCTGTGGACTGGACATTGTAGAAAGATACTTGAAATGGAAAATGGGAAGTACATAA
>Glyma.02g272200.1.p sequence-type=predicted peptide transcript=Glyma.02g272200.1 locus=Glyma.02g272200 ID=Glyma.02g272200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MELKKTPTSLVFAVNGERFDLSHVDPSTTLLEFLRTRTRFKSVKLGCGEGGCGACVVLISKYDPVHDQVEDFTASSCLTLLCSIHGWSITTSEGIGNTKEGFHPIHERFAGFHATQCGFCTPGMCVSLYGTLVNAEKTSSPKPPAGFSKVTVTEAEKAIAGNLCRCTGYRAIADVCKSFSADVDMEDLGLNSFWRKGDSQDSKLSRLPQYDHTQSISRFPMFLKEIKHDVFLASDKHSWHRPISLTELQNLLKLNHANSTRIKIVVSNTGMGYYKDKEGYDKYIDLRGISELSKIRKDQTGIEIGAAVTISKAIQTLKEESRNDFLSDYVMILEKIADHMSKVASGFIRNTASVGGNLVMAQKNNFPSDIAVILLAVDAMVHIMTDTQFEWLALEEFLERPTLGFESVLLSIKIPSLELNKSESSEPESRFLFETYRAAPRPLGNALPYLNAAFLAKVFPCKDSGGTVIDTCRLSFGTYGIKHAIRAKNVEEFLAGKLLNVSILHDAVNLVTETIVPKDDTSKTAYRSSLAAGFIFQFLNPLFNTSVITNSYLNGHINLPLVKDLELKENQKQVHHDNVPTLLSSGKQVLEAGCEYHPVGEPIMKSGAALQASGEAVFVDDIPSPSNCLHGAYIHSAKPLARVRSIKLTPELQLDGVRDIISSKDIPNGGENIGSKTIFGIEPLFAEEITRCVGERLAFVVADTQKLADMAANSAVVDYDNENLEPPILSVEDAVERSSFFEVPPFLYPKHVGDISKGMAEADHKILSAEMKLGSQYYFYMETQTALAVPDEDNCITVYSSSQCPEFTHSIIARCLGIPENNVRVITRRVGGGFGGKAIKAMPVAISCALAAQKLQRSVRMYLNRRTDMIMAGGRHPMKITYSVGFRNDGKITALDLQILVNAGIYVDISAIMPHNIVCALKKYDWGALSFDIKVCRTNHPSRSSMRGPGEVQGSFIAEAIIENVAATLSMDVDSVRSINLHTYKSLQSFYEYSHGEPYEYTLPSIWSKLAVSANYDQRNKLVQEFNRVNTWKKRGISRVPVVIQLMLRPTPGKVSIFSDGSIVVEVGGIELGQGLWTKVKQTTAYALGVIQCDGTEGLLDKVRVVQSDTVSLIQGGFTAGSTTSESSCEAVRLCCNVLVERLKPLKEKLQEEMGSIKWETLIHQAYMQAVNLLASSFYAPSVNSMSYLNYGAAVSEVEIDLLNGETRFLQTDIIYDCGQSLNPAVDLGQIEGAFVQGLGFFMLEEYETNLDGLVLQDGTWNYKIPTIDTIPKQFNVQILNSGHHQQRVLSSKASGEPPLLLAASIHCATRAAVKEARKQLLSWSNQDGEDSTFQLGVPATMPVVKELCGLDIVERYLKWKMGST*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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