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Report for Sequence Feature Glyma.02g258900

Feature Type:gene_model
Chromosome:Gm02
Start:44601641
stop:44603759
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g258900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G24920.1AT secE/sec61-gamma protein transport protein JGI N/AIEA
GO:0006605GO-bp protein targeting EnsemblGenomesN/AIEA
GO:0006605GO-bp protein targeting JGI N/AIEA
GO:0006886GO-bp intracellular protein transport EnsemblGenomesN/AIEA
GO:0006886GO-bp intracellular protein transport JGI N/AIEA
GO:0015031GO-bp protein transport EnsemblGenomesN/AIEA
GO:0071806GO-bp protein transmembrane transport EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0015450GO-mf P-P-bond-hydrolysis-driven protein transmembrane transporter activity EnsemblGenomesN/AIEA
KOG3498 KOG Preprotein translocase, gamma subunit JGI N/AIEA
PTHR12309Panther SEC61 GAMMA SUBUNIT JGI N/AIEA
PF00584PFAM SecE/Sec61-gamma subunits of protein translocation complex JGI N/AIEA

Expression Patterns of Glyma.02g258900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g258900 not represented in the dataset
Glyma.02g258900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g258900
ParalogEvidenceComments
Glyma.14g053200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g258900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g42671 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g258900
>Glyma.02g258900.1 sequence-type=CDS polypeptide=Glyma.02g258900.1.p locus=Glyma.02g258900 ID=Glyma.02g258900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACGCCATTGATTCTGTGTTCGATCCGCTGAGAGAATTCGCAAAGGACAGCGTGAGGCTCGTGAAGCGCTGCCACAAACCCGATCGCAAAGAATTCTCCAAGGTTGCCGTCCGTACTGCAATTGGTTTCGTCGTGATGGGATTCGTCGGTTTCTTCGTGAAGCTCATTTTCATTCCAATTAACAACATCATCGTCGGATCTGGTTAG
Predicted protein sequences of Glyma.02g258900
>Glyma.02g258900.1.p sequence-type=predicted peptide transcript=Glyma.02g258900.1 locus=Glyma.02g258900 ID=Glyma.02g258900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKEFSKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG*






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