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Report for Sequence Feature Glyma.02g257400

Feature Type:gene_model
Chromosome:Gm02
Start:44396026
stop:44400575
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g257400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G55960.1AT Haloacid dehalogenase-like hydrolase (HAD) superfamily protein JGI N/AIEA
GO:0006470GO-bp protein dephosphorylation EnsemblGenomesN/AIEA
GO:0016311GO-bp dephosphorylation EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0004721GO-mf phosphoprotein phosphatase activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0016791GO-mf phosphatase activity EnsemblGenomesN/AIEA
KOG1605 KOG TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) JGI N/AIEA
PTHR12210Panther NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED JGI N/AIEA
PTHR12210:SF5Panther HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN-CONTAINING PROTEIN JGI N/AIEA
PF03031PFAM NLI interacting factor-like phosphatase JGI N/AIEA

Expression Patterns of Glyma.02g257400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g257400
ParalogEvidenceComments
Glyma.14g059000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g257400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g42450 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g257400
>Glyma.02g257400.1 sequence-type=CDS polypeptide=Glyma.02g257400.1.p locus=Glyma.02g257400 ID=Glyma.02g257400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGCGAGTTGACTCAGGCGGAGGTGTACTCGCCTCGGACTCAGCAAGTGTGGAGGGCACTGTTGAGTTGGTTAGCTTTCTTCTTTCAGATCTTCTTCCAGATTATAAGAGCCTTAGGTCACTACCCTCTACTCTCTTTCTCTTCTTCTTCAAACGCTGCTTCATCTTCAAACGCTTCCTTCAAGCCTCTTCCCTCCGTTGAGCTTTCTGAACACGATTCGCCTCCTTCCTCCGCCCTTCAAATCTCACCCCTTCATTGTTCCCCCAAAGATCATCCCATCCCTAAACTCACGGTGGTGCTGGACTTAGATGAAACACTGGTATGTGCATACGAGACATCAAGTTTGCCAGCTGCTCTACGGACTCAAGCAATCGAAGGTGGTTTGAATTGGTTTGAGCTGGAATGTGTATCGATAGACAAGGAAGGAGAAGGCAAACCAAAAATCAATTATGTTACAGTATTTGAACGCCCTGGGTTGAAGGAATTCTTAAAGCAACTCAGTGAATTTGCTGACATGGTGCTGTTTACAGCTGGTCTTGAAGGCTATGCTAGACCCCTTGTTGACAGAATAGATGTGGAAAATCGATTCTGTCTACGACTTTATCGGCCCTCAACAATTAGCACGGAATATCGGGAACATGTCAAGGATCTTACCTGCATCTCAAAGGATCTATGCCGCATTGTTATTGTAGACAATAATCCCTTCAGCTTTGTATTGCAACCAGTGAATGGAATTCCATGCATTCCATTTTCTGCTGGACAACCACATGACACCCAGCTTCTAGATGTCATTCTTCCACTTCTCAAGCAACTTTCTGAGCGGAATGATATAAGACCTTTGCTCTATGAAAAGTTCCACATGCCTGATTGGTTCCAGAAACAAGGGATTCCAGCTTCCAGTTGGGCTTTGTAG
Predicted protein sequences of Glyma.02g257400
>Glyma.02g257400.1.p sequence-type=predicted peptide transcript=Glyma.02g257400.1 locus=Glyma.02g257400 ID=Glyma.02g257400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGELTQAEVYSPRTQQVWRALLSWLAFFFQIFFQIIRALGHYPLLSFSSSSNAASSSNASFKPLPSVELSEHDSPPSSALQISPLHCSPKDHPIPKLTVVLDLDETLVCAYETSSLPAALRTQAIEGGLNWFELECVSIDKEGEGKPKINYVTVFERPGLKEFLKQLSEFADMVLFTAGLEGYARPLVDRIDVENRFCLRLYRPSTISTEYREHVKDLTCISKDLCRIVIVDNNPFSFVLQPVNGIPCIPFSAGQPHDTQLLDVILPLLKQLSERNDIRPLLYEKFHMPDWFQKQGIPASSWAL*






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