Glyma.02g253700

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Report for Sequence Feature Glyma.02g253700

Feature Type:	gene_model
Chromosome:	Gm02
Start:	44084898
stop:	44087376
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.02g253700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G55770.6	AT	GATA type zinc finger transcription factor family protein	JGI	N/A	IEA
AT3G55770.7	AT	GATA type zinc finger transcription factor family protein	JGI	N/A	IEA
GO:0008270	GO-mf	zinc ion binding	JGI	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
PTHR24206	Panther	FAMILY NOT NAMED	JGI	N/A	IEA
PTHR24206:SF65	Panther		JGI	N/A	IEA
PF00412	PFAM	LIM domain	JGI	N/A	IEA

Expression Patterns of Glyma.02g253700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g253700 not represented in the dataset	Glyma.02g253700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.02g253700

Paralog	Evidence	Comments
Glyma.14g062700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g253700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma02g42101	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.02g253700

Limit To All Plant Sequences

>Glyma.02g253700.2 sequence-type=transcript locus=Glyma.02g253700 ID=Glyma.02g253700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTGTTGTTATCAATCAATTTAATATATTCATATCCTTCCACCTGAGTTCTTAGTCCTGAATGTCCTTGTCCGTCTCAGAGTCTCTCTTCACAACCTCACCGATCTGCCATTTCTCACTCTTTTATCAACAAGCAGCTGAGGTTATATTTTAAAGGTCTAAGAAGCTACATTGTATTTTTGTTTACACATTTAGAGATTGGTAGTGGTAGGTTTGGTGCACTTAGATCAAAAAGCCAGAGACATGTCTTTTATTGGTACTCAGCAAAAGTGCAAGGCTTGTGGCAAAACGGTTTATCCGGTTGATCAGTTATCTGCTTACCACAAAGCATGCTTCAAGTGCTCCCATTGCGAAGGAACCTTGAAGCTTAGCAACTATTCCTCCATGGAAAGTGTTCTTTACTGTAAGCCTCATAATGAGCAACTCTTCAAGGAGACAGGATCTTTCAAGAAGAACTTCCAGTCACCTTCTAAGCAAGCTGACAAAACAACTCCTGAGCTGACAAGGTCCCCTAGTAAAGCTGCTAGCATGTTTTCTGGGACCAAGAAAAGTGTGCTACATGTGGCAAAACTGCTTATCCGTTGGAGAAGGCCTATCACAAATCTTGTTTCAAATGTTCACATGGCGGCTGTCCCATAACTCCACCCAATTATGCAGCCCTGGAGGGCGTTTTGTATTGCAAGCACCATTTCTCCCAGCTTTTTAAGGAGAAAGGGAGCTATAATCATCTTATTAAATCTGCATCAATCAAACGGCCAGCAAACTGTGTTCCATAAGCTTGAGTCCCGGTGTTATCTTTTGCTTTTTTATCATCTTTGGAGCAAGTGTTTGTGCTTTTTCCATTTTTATTCTACTTGGTGTGCAATTTACACTGTGATGTATTTGACCAAGCACATTCAGTAATAATAGTGTGATTTGCAAGATGTCA

>Glyma.02g253700.3 sequence-type=transcript locus=Glyma.02g253700 ID=Glyma.02g253700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTGTTGTTATCAATCAATTTAATATATTCATATCCTTCCACCTGAGTTCTTAGTCCTGAATGTCCTTGTCCGTCTCAGAGTCTCTCTTCACAACCTCACCGATCTGCCATTTCTCACTCTTTTATCAACAAGCTGAGGTTATATTTTAAAGGTCTAAGAAGCTACATTGTATTTTTGTTTACACATTTAGAGATTGGTAGTGGTAGGTTTGGTGCACTTAGATCAAAAAGCCAGAGACATGTCTTTTATTGGTACTCAGCAAAAGTGCAAGGCTTGTGGCAAAACGGTTTATCCGGTTGATCAGTTATCTGCTTACCACAAAGCATGCTTCAAGTGCTCCCATTGCGAAGGAACCTTGAAGCTTAGCAACTATTCCTCCATGGAAAGTGTTCTTTACTGTAAGCCTCATAATGAGCAACTCTTCAAGGAGACAGGATCTTTCAAGAAGAACTTCCAGTCACCTTCTAAGCAAGCTGACAAAACAACTCCTGAGCTGACAAGGTCCCCTAGTAAAGCTGCTAGCATGTTTTCTGGGACCAAGAAAAGTGTGCTACATGTGGCAAAACTGCTTATCCGTTGGAGAAGGCCTATCACAAATCTTGTTTCAAATGTTCACATGGCGGCTGTCCCATAACTCCACCCAATTATGCAGCCCTGGAGGGCGTTTTGTATTGCAAGCACCATTTCTCCCAGCTTTTTAAGGAGAAAGGGAGCTATAATCATCTTATTAAATCTGCATCAATCAAACGGCCAGCAAACTGTGTTCCATAAGCTTGAGTCCCGGTGTTATCTTTTGCTTTTTTATCATCTTTGGAGCAAGTGTTTGTGCTTTTTCCATTTTTATTCTACTTGGTGTGCAATTTACACTGTGATGTATTTGACCAAGCACATTCAGTAATAATAGTGTGATTTGCA

Coding sequences of Glyma.02g253700

Limit To All Plant Sequences

>Glyma.02g253700.1 sequence-type=CDS polypeptide=Glyma.02g253700.1.p locus=Glyma.02g253700 ID=Glyma.02g253700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCCTTGTCCGTCTCAGAGTCTCTCTTCACAACCTCACCGATCTGCCATTTCTCACTCTTTTATCAACAAGTGGTAGGTTTGGTGCACTTAGATCAAAAAGCCAGAGACATGTCTTTTATTGGTACTCAGCAAAAGTGCAAGGCTTGTGGCAAAACGGTTTATCCGGTTGATCAGTTATCTGCTTACCACAAAGCATGCTTCAAGTGCTCCCATTGCGAAGGAACCTTGAAGCTTAGCAACTATTCCTCCATGGAAAGTGTTCTTTACTGTAAGCCTCATAATGAGCAACTCTTCAAGGAGACAGGATCTTTCAAGAAGAACTTCCAGTCACCTTCTAAGCAAGCTGACAAAACAACTCCTGAGCTGACAAGGTCCCCTAGTAAAGCTGCTAGCATGTTTTCTGGGACCAAGAAAAGTGTGCTACATGTGGCAAAACTGCTTATCCGTTGGAGAAGGCCTATCACAAATCTTGTTTCAAATGTTCACATGGCGGCTGTCCCATAA

>Glyma.02g253700.2 sequence-type=CDS polypeptide=Glyma.02g253700.2.p locus=Glyma.02g253700 ID=Glyma.02g253700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTTTATTGGTACTCAGCAAAAGTGCAAGGCTTGTGGCAAAACGGTTTATCCGGTTGATCAGTTATCTGCTTACCACAAAGCATGCTTCAAGTGCTCCCATTGCGAAGGAACCTTGAAGCTTAGCAACTATTCCTCCATGGAAAGTGTTCTTTACTGTAAGCCTCATAATGAGCAACTCTTCAAGGAGACAGGATCTTTCAAGAAGAACTTCCAGTCACCTTCTAAGCAAGCTGACAAAACAACTCCTGAGCTGACAAGGTCCCCTAGTAAAGCTGCTAGCATGTTTTCTGGGACCAAGAAAAGTGTGCTACATGTGGCAAAACTGCTTATCCGTTGGAGAAGGCCTATCACAAATCTTGTTTCAAATGTTCACATGGCGGCTGTCCCATAA

>Glyma.02g253700.3 sequence-type=CDS polypeptide=Glyma.02g253700.3.p locus=Glyma.02g253700 ID=Glyma.02g253700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTTTATTGGTACTCAGCAAAAGTGCAAGGCTTGTGGCAAAACGGTTTATCCGGTTGATCAGTTATCTGCTTACCACAAAGCATGCTTCAAGTGCTCCCATTGCGAAGGAACCTTGAAGCTTAGCAACTATTCCTCCATGGAAAGTGTTCTTTACTGTAAGCCTCATAATGAGCAACTCTTCAAGGAGACAGGATCTTTCAAGAAGAACTTCCAGTCACCTTCTAAGCAAGCTGACAAAACAACTCCTGAGCTGACAAGGTCCCCTAGTAAAGCTGCTAGCATGTTTTCTGGGACCAAGAAAAGTGTGCTACATGTGGCAAAACTGCTTATCCGTTGGAGAAGGCCTATCACAAATCTTGTTTCAAATGTTCACATGGCGGCTGTCCCATAA

Predicted protein sequences of Glyma.02g253700

Limit To All Plant Sequences

>Glyma.02g253700.1.p sequence-type=predicted peptide transcript=Glyma.02g253700.1 locus=Glyma.02g253700 ID=Glyma.02g253700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSLSVSESLFTTSPICHFSLFYQQVVGLVHLDQKARDMSFIGTQQKCKACGKTVYPVDQLSAYHKACFKCSHCEGTLKLSNYSSMESVLYCKPHNEQLFKETGSFKKNFQSPSKQADKTTPELTRSPSKAASMFSGTKKSVLHVAKLLIRWRRPITNLVSNVHMAAVP*

>Glyma.02g253700.2.p sequence-type=predicted peptide transcript=Glyma.02g253700.2 locus=Glyma.02g253700 ID=Glyma.02g253700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSFIGTQQKCKACGKTVYPVDQLSAYHKACFKCSHCEGTLKLSNYSSMESVLYCKPHNEQLFKETGSFKKNFQSPSKQADKTTPELTRSPSKAASMFSGTKKSVLHVAKLLIRWRRPITNLVSNVHMAAVP*

>Glyma.02g253700.3.p sequence-type=predicted peptide transcript=Glyma.02g253700.3 locus=Glyma.02g253700 ID=Glyma.02g253700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSFIGTQQKCKACGKTVYPVDQLSAYHKACFKCSHCEGTLKLSNYSSMESVLYCKPHNEQLFKETGSFKKNFQSPSKQADKTTPELTRSPSKAASMFSGTKKSVLHVAKLLIRWRRPITNLVSNVHMAAVP*

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