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Report for Sequence Feature Glyma.02g251700

Feature Type:gene_model
Chromosome:Gm02
Start:43887081
stop:43893301
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g251700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G28450.1AT nucleotide binding;protein binding JGI N/AIEA
GO:0000462GO-bp maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) EnsemblGenomesN/AIEA
GO:0005730GO-cc nucleolus EnsemblGenomesN/AIEA
GO:0032040GO-cc small-subunit processome EnsemblGenomesN/AIEA
GO:0080008GO-cc Cul4-RING E3 ubiquitin ligase complex EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG0268 KOG Sof1-like rRNA processing protein (contains WD40 repeats) JGI N/AIEA
PTHR22851Panther U3 SMALL NUCLEOLAR RNA (U3 SNORNA) ASSOCIATED PROTEIN JGI N/AIEA
PF00400PFAM WD domain, G-beta repeat JGI N/AIEA
PF04158PFAM Sof1-like domain JGI N/AIEA

Expression Patterns of Glyma.02g251700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g251700
ParalogEvidenceComments
Glyma.14g065100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g251700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g41900 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g251700
>Glyma.02g251700.1 sequence-type=CDS polypeptide=Glyma.02g251700.1.p locus=Glyma.02g251700 ID=Glyma.02g251700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGGTCAAAGTTATATCACGCTCCGTGGATGAGTTCACCCGAGAGCGAAGTCAAGACCTTCAGAGGGTGTTCCGGAATTACGATCCCAGCCTTCGTCCTCAAGAGAAGGCGGTGGAGTATGTGCGTGCTGTTAATGCGGTGAAGTTGGACAAGATATTTGCAAGACCATTTATTGGAGCATTGGATGGGCATGTAGATGCTGTTTCGTGTATGACGAGGAACCCTAGCCAGTTGAAAGGGATATTCTCCAGTTCGATGGATGGAGATATTCGTCTCTGGGATTTAGCTGCAAGACGGACAGTTTGTCAGTTTCCTGGTCACCGAGGTGCTGTACGAGGCTTGACAGCATCTACAGATGGACGCATTCTTGTGTCATGTGGAACTGATTGCACTATCAGACTCTGGAGTGTTCCTATTACTACTCTTATGGAGTCAGATGACTCAACTAAGAGCACTGTTGAGCCAGCAAGTGTTTATGTTTGGAAGAATGCATTTTGGGGTGCTGATCACCAGTGGGATGGCGAGCATTTTGCCACAGCTGGTGCTCAAGTAGATATATGGAATCACAACAGGTCTCAGCCAATAAACAGTTTTGAATGGGGGTCAGATACTGTAATTTCTGTCCGGTTTAATCCTGGAGAACCAAATCTGTTGGCCACCTCAGCTAGTGACCGGAGCATAATTCTGTATGATTTACGTATGTCTTCCCCAGTGAGGAAAATGATAATGATGACCAAAACAAATTCTATATGTTGGAACCCAATGGAACCCATAAATTTTACGGCTGCAAATGAAGATGGTAACTGCTATAGCTATGATGCTAGGAAGTTAGATGAAGCTAAATGTGTTCACAGAGATCATGTTTCTGCAGTGATGGATGTTGACTACTCACCAACCGGACGGGAGTTTGTCACTGGATCTTATGATAGAACAGTGAGAATTTTCCAGTATAATGGTGGTCACAGCAAGGAGATTTATCATACTAAGAGAATGCAAAGGGTATTTGCTGTCAAGTTCAGTGGTGATGGAAGTTATGTGATTTCAGGAAGTGATGACACTAACCTTAGGCTTTGGAAGGCAAAAGCATCGGAGCAACTTGGAGTAATTCTCCCAAGGGAACGGAAGAAGCATGAGTATCATGAAGCCATAAAAAAACGCTATAAGCACCTCCCTGAAGTTAACCGTATCGCAAGACATAGACACTTGCCAAGACCAATATTCAAAGCTTCTGCTTTAATGCGCGTTATGGCGGATGCTAAGAGAAGGAAGGAAGAGAAGAGGAAAGCTCACAGTGCTCCAGGGAGTATTACAACACAGCCATTACGAAGACGAAGAATTATCAAAGAAGTCGAGTGA
Predicted protein sequences of Glyma.02g251700
>Glyma.02g251700.1.p sequence-type=predicted peptide transcript=Glyma.02g251700.1 locus=Glyma.02g251700 ID=Glyma.02g251700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKVKVISRSVDEFTRERSQDLQRVFRNYDPSLRPQEKAVEYVRAVNAVKLDKIFARPFIGALDGHVDAVSCMTRNPSQLKGIFSSSMDGDIRLWDLAARRTVCQFPGHRGAVRGLTASTDGRILVSCGTDCTIRLWSVPITTLMESDDSTKSTVEPASVYVWKNAFWGADHQWDGEHFATAGAQVDIWNHNRSQPINSFEWGSDTVISVRFNPGEPNLLATSASDRSIILYDLRMSSPVRKMIMMTKTNSICWNPMEPINFTAANEDGNCYSYDARKLDEAKCVHRDHVSAVMDVDYSPTGREFVTGSYDRTVRIFQYNGGHSKEIYHTKRMQRVFAVKFSGDGSYVISGSDDTNLRLWKAKASEQLGVILPRERKKHEYHEAIKKRYKHLPEVNRIARHRHLPRPIFKASALMRVMADAKRRKEEKRKAHSAPGSITTQPLRRRRIIKEVE*






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