Glyma.02g251100

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.02g251100

Feature Type:	gene_model
Chromosome:	Gm02
Start:	43845202
stop:	43852326
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.02g251100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G55610.1	AT	delta 1-pyrroline-5-carboxylate synthase 2	JGI	N/A	IEA
GO:0006561	GO-bp	proline biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0008152	GO-bp	metabolic process	EnsemblGenomes	N/A	IEA
GO:0008152	GO-bp	metabolic process	JGI	N/A	IEA
GO:0008652	GO-bp	cellular amino acid biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0016310	GO-bp	phosphorylation	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	JGI	N/A	IEA
GO:0055129	GO-bp	L-proline biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0000166	GO-mf	nucleotide binding	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
GO:0004349	GO-mf	glutamate 5-kinase activity	EnsemblGenomes	N/A	IEA
GO:0004350	GO-mf	glutamate-5-semialdehyde dehydrogenase activity	EnsemblGenomes	N/A	IEA
GO:0005524	GO-mf	ATP binding	EnsemblGenomes	N/A	IEA
GO:0016301	GO-mf	kinase activity	EnsemblGenomes	N/A	IEA
GO:0016491	GO-mf	oxidoreductase activity	EnsemblGenomes	N/A	IEA
GO:0016491	GO-mf	oxidoreductase activity	JGI	N/A	IEA
GO:0016620	GO-mf	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	EnsemblGenomes	N/A	IEA
GO:0016740	GO-mf	transferase activity	EnsemblGenomes	N/A	IEA
KOG4165	KOG	Gamma-glutamyl phosphate reductase	JGI	N/A	IEA
PTHR11063	Panther	GLUTAMATE SEMIALDEHYDE DEHYDROGENASE	JGI	N/A	IEA
PTHR11063:SF2	Panther		JGI	N/A	IEA
PF00171	PFAM	Aldehyde dehydrogenase family	JGI	N/A	IEA
PF00696	PFAM	Amino acid kinase family	JGI	N/A	IEA
PROSYN-PWY	SoyCyc9	L-proline biosynthesis I	Plant Metabolic Network		ISS
PWY-3341	SoyCyc9	L-proline biosynthesis III	Plant Metabolic Network		ISS
PWY-6922	SoyCyc9	L-N^δ-acetylornithine biosynthesis	Plant Metabolic Network		ISS
GN7V-60922	SoyCyc9-rxn	glutamate-5-semialdehyde dehydrogenase	Plant Metabolic Network		ISS

Proteins Associated with Glyma.02g251100

Locus	Gene Symbol	Protein Name
	ALDH18B2	delta-1-pyrroline-5-carboxylate synthase

Expression Patterns of Glyma.02g251100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.02g251100

Paralog	Evidence	Comments
Glyma.14g065600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g251100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma02g41850	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.02g251100

Limit To All Plant Sequences

>Glyma.02g251100.1 sequence-type=CDS polypeptide=Glyma.02g251100.1.p locus=Glyma.02g251100 ID=Glyma.02g251100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGATCCTTCTCGGAGTTTCATGAAGGACGTGAAGCGCGTGATCATCAAGGTCGGCACCGCCGTGGTCACTCGCGAGGAGGGAAGGTTAGCTGTCGGAAGATTAGGCGCTCTCTGCGAGCAGATTAAGCAACTCAACTCCCTCGGATACGACATTATTCTCGTCTCCTCCGGCGCCGTCGGCATCGGCCGCCAACGACTCCGCTACCGCAAATTGATCAACAGCAGCTTCGCCGACCTCCAGAAACCCCAACACGAACTCGACGGCAAGGCCTGCGCCGCCGTCGGACAGAACAGTCTCATGGCTCTCTACGATACTCTCTTCACTCAACTCGATGTGACGTCTGCTCAGCTTCTTGTGACGGATAACGATTTTCGAGATAAGGATTTCAGGAAGCAACTTACTGAGACCGTGAAATCGTTGTTATCGCTTAAGGTTATTCCGGTGTTCAATGAGAACGATGCTGTCAGCACTAGGAAGGCTCCCTATGAGGATTCTTCTGGTATATTTTGGGATAATGATAGTTTATCTGCTCTGTTGGCCTTGGAGTTAAAAGCCGATCTTCTTGTTTTGTTGAGTGATGTAGAAGGTCTTTATAGTGGCCCTCCAAGTGATCCACATTCAAAGCTTATTCATACGTATATTAAGGAGAAGCATCAGAATGAAATTACTTTTGGTGACAAATCTAGAGTGGGAAGAGGTGGAATGACTGCCAAAGTAAAAGCTGCTGTTCATGCAGCTGATGCTGGCATTCCTGTTGTTATTACCAGTGGTTTTGCAGCTGAGAATATTATCAATGTTCTCCAAGGACAACGCATAGGAACTCTCTTCCATAAAGATGCACATGAGTGGGTCCAAGTAAAAGAGGTTGATGCTCGTGAGATGGCAGTTGCAGCCAGGGAATGTTCCAGAAGGCTCCAGGCCATATCTTCTGAAGAAAGGAATCAAATTTTACATAAAATAGCTGATGCCCTGGAAGCAAATGAAAAAATAATCAGGACTGAAAATGAAGCTGATATTGCTGTGGCACAAGAAGCAGGATATGAAAAATCCTTGGTGGCAAGGCTAGCTATAAAACCTGGGAAGATTGCAAGCCTTGCAAACAACATGCGAATTATTGCCAACATGGAAGATCCAATTGGTCAAGTATTAAAAAGAACTGAGCTATCAGATGGGCTAATTTTAGAGAAGACATCATCTCCTTTGGGAGTGCTCCTTATTGTTTTTGAGTCACGCCCTGATGCTCTTGTACAGATAGCTTCACTGGCAATCCGAAGTGGGAATGGACTTCTCTTGAAAGGTGGCAAAGAAGCTAGGCGGTCAAATGCAATTTTGCACAAAGTAATTACTGAGGCCATACCAGATACTGTTGGTGGAAAACTTATAGGACTTGTGACCTCAAGGGAAGAAATCCCTGAGCTACTTAAGCTGGATGATGTAATCGATCTGGTGATTCCAAGAGGCAGCAACAAACTTGTTTCTCAGATCAAGAGTTCCACTAAAATTCCTGTTTTAGGTCATGCTGATGGAGTTTGTCATGTCTATGTTGATAAGTCTGCTAATGTGGAGATGGCAAGGCGGATTGTACTTGATGCAAAAATAGATTATCCAGCAGCCTGCAACGCCATGGAAACACTTCTTGTCCACAAGGATTTGATAGAGAAAGGTTGGTTAAATGATATTGTTGTTGACCTACGAACTGAAGGCGTTAAATTATATGGAGGACCAAGGGCAAGTTCTCTGTTAAATATTCCACAAGCACAAACATTTCATCATGAGTACAGTTCGCTGGCTTGCACTGTTGAAATTGTGGATGACGTGTATGCAGCTATTGATCATATAAATCTTTATGGAAGTGCACATACTGACTCCATCGTTGCAGAAGATAAAGAAGTTGCTAATGTGTTTCTACGCCAAGTAGACAGTGCTGCTGTTTTTCACAATGCAAGCACCAGATTCAGTGATGGGGCAAGATTTGGACTAGGCGCAGAGGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGAGTTGAGGGATTGTTAACAACAAGATGGATACTAAAAGGAAGTGGACAAGTAGTGGATGGTGATAAAGGGATTGTCTATACCCACAAAGACATTGCAACTTAA

Predicted protein sequences of Glyma.02g251100

Limit To All Plant Sequences

>Glyma.02g251100.1.p sequence-type=predicted peptide transcript=Glyma.02g251100.1 locus=Glyma.02g251100 ID=Glyma.02g251100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADPSRSFMKDVKRVIIKVGTAVVTREEGRLAVGRLGALCEQIKQLNSLGYDIILVSSGAVGIGRQRLRYRKLINSSFADLQKPQHELDGKACAAVGQNSLMALYDTLFTQLDVTSAQLLVTDNDFRDKDFRKQLTETVKSLLSLKVIPVFNENDAVSTRKAPYEDSSGIFWDNDSLSALLALELKADLLVLLSDVEGLYSGPPSDPHSKLIHTYIKEKHQNEITFGDKSRVGRGGMTAKVKAAVHAADAGIPVVITSGFAAENIINVLQGQRIGTLFHKDAHEWVQVKEVDAREMAVAARECSRRLQAISSEERNQILHKIADALEANEKIIRTENEADIAVAQEAGYEKSLVARLAIKPGKIASLANNMRIIANMEDPIGQVLKRTELSDGLILEKTSSPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEARRSNAILHKVITEAIPDTVGGKLIGLVTSREEIPELLKLDDVIDLVIPRGSNKLVSQIKSSTKIPVLGHADGVCHVYVDKSANVEMARRIVLDAKIDYPAACNAMETLLVHKDLIEKGWLNDIVVDLRTEGVKLYGGPRASSLLNIPQAQTFHHEYSSLACTVEIVDDVYAAIDHINLYGSAHTDSIVAEDKEVANVFLRQVDSAAVFHNASTRFSDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILKGSGQVVDGDKGIVYTHKDIAT*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain