Glyma.02g224300

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Report for Sequence Feature Glyma.02g224300

Feature Type:	gene_model
Chromosome:	Gm02
Start:	41180850
stop:	41186229
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.02g224300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G29590.1	AT	Thioesterase superfamily protein	JGI	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0047617	GO-mf	acyl-CoA hydrolase activity	EnsemblGenomes	N/A	IEA
KOG3328	KOG	HGG motif-containing thioesterase	JGI	N/A	IEA
PTHR21660	Panther	THIOESTERASE SUPERFAMILY MEMBER-RELATED	JGI	N/A	IEA
PF03061	PFAM	Thioesterase superfamily	JGI	N/A	IEA
PWY-1121	SoyCyc9	suberin monomers biosynthesis	Plant Metabolic Network		ISS
PWY-321	SoyCyc9	cutin biosynthesis	Plant Metabolic Network		ISS
PWY-5148	SoyCyc9	acyl-CoA hydrolysis	Plant Metabolic Network		ISS
PWY-6733	SoyCyc9	sporopollenin precursors biosynthesis	Plant Metabolic Network		ISS
GN7V-65441	SoyCyc9-rxn	acyl-CoA hydrolase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.02g224300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g224300 not represented in the dataset	Glyma.02g224300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.02g224300

Paralog	Evidence	Comments
Glyma.14g191000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g224300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma02g38940	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.02g224300

Limit To All Plant Sequences

>Glyma.02g224300.2 sequence-type=transcript locus=Glyma.02g224300 ID=Glyma.02g224300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAAAACAGGCTAGGAGGGTACATAGAAGGGGAAAATTAAAATTTATGTTGCTGGTGTTCTTAGTTGAGCTTGATACTTTGAGGCATGCTTTGGTTGGTATGCTAGGTAGTTCTGGCTTATCAACAGAGCAGAGAAAATAGAGACTCCTCAATTGCTACTTGAGGAGAATGTATATGATTTTGTTCAACATATCCTGAGAAATGTTCGTTGCGCTTTTGGGTAACCCGAAATTTTAATTTCCCCTTTTATGTACCCTGCAGCCTCCATTAAAGTAATGTTGTAAGAACACCAGGTGAGAAAACTCCACTCACCCTTAACAAGAGCTGCAACCGAGTTTCAGATAGCAACCAGCAACAAGCAACCCCTATAGATCGTCTTCGTCTTGGTGGGTTGGAAAAAGGCAAGACAAAGAGGATGGAGAAGGTGAGAGAGATGCTGAGACTAACGCAGCAAGAATCGGTCGCTATGTCACGACTCAACTCTGTTCCTTCCCTCAGAGCCGGCGATAACTCCTCCTTCTACGAACACTTCATCCTCTCTGGCATCCGAGTTGACCGAGTCCAACCCGGTCTCGTCTCCTGCACTTTCAAAGTCCCCTCGCGCCTCGCTGACAGGAGTGGGAAGTTGGCGAGTGGAGCAATTGCGAATCTGGTGGACGAGGTTGGAGGTGCTGTCATCCATGAAGAGGGTCTCCCCATGAATGTTTCCGTTGACATGTCTATTTCTTTTCTCTCATCTGTGAGAGTTGGCGTAAGTTATTACCATATACTGTACTAACAATAACATCTTAATTAATGCCTATTTTGCTAAGTGAGAGGATAAGGTTGAAATTGATGATTGATGTTGTGCATCAAACCCTACTTTCACATCATTAATTTTTGTCTGTTGTATATAGGGGGATGGTAATTGATAATGACCTCATATCTACCCAGTCCAACATTAGTAGGCTAGTTAGTTACTATAGTGAATAGCATCAGGGAAGTTTATGAATTCATAATAAACTTTAGACCACATTAAGATTTATTAGATTGCGTATTGCATTTTATAGATAGATATGCTATCCAACTGTCCAATTAATTTCTGCCAAACTGTTCTTAGATGGACTCGGTTGCTCTACAGTTCAAAATGCAGTCTCAACCATTCAAAACATGTGTGAAAACTGAACAGATAAAAAATGAGACTTAAGATTGACCCTGTTCCATTATTAGAATGTCCCTTATCTGAAATAAGATTGTAAAAAGTGTTCTTTTCATCAATGCCTGTTGGTCTAAGTGACAAATAGCTGGTTCGCCTTGAGTTATATCTTGGGTTCGACTTTTGTGAACGAAAAAAAAATTGTCGCCAGAATAGCTTTGTCCTCTTAAATGGGTTCACCTGACTCGACTTAGATTACGCTGAGGATTT

Coding sequences of Glyma.02g224300

Limit To All Plant Sequences

>Glyma.02g224300.1 sequence-type=CDS polypeptide=Glyma.02g224300.1.p locus=Glyma.02g224300 ID=Glyma.02g224300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAAGGTGAGAGAGATGCTGAGACTAACGCAGCAAGAATCGGTCGCTATGTCACGACTCAACTCTGTTCCTTCCCTCAGAGCCGGCGATAACTCCTCCTTCTACGAACACTTCATCCTCTCTGGCATCCGAGTTGACCGAGTCCAACCCGGTCTCGTCTCCTGCACTTTCAAAGTCCCCTCGCGCCTCGCTGACAGGAGTGGGAAGTTGGCGAGTGGAGCAATTGCGAATCTGGTGGACGAGGTTGGAGGTGCTGTCATCCATGAAGAGGGTCTCCCCATGAATGTTTCCGTTGACATGTCTATTTCTTTTCTCTCATCTGTGAGAGTTGGCGATGAACTAGAAATTACTTCTAGGTTGTTAGGAAGGAAAGGAGGTTATTCTGGGACTATTGTTCTTCTTAAAAACAAAGCAACTGGAGAATTGATAGCGGAAGGTCGTCATTCACTATTTGGTAGACATAACAGCAAAATGTAA

>Glyma.02g224300.2 sequence-type=CDS polypeptide=Glyma.02g224300.2.p locus=Glyma.02g224300 ID=Glyma.02g224300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAAGGTGAGAGAGATGCTGAGACTAACGCAGCAAGAATCGGTCGCTATGTCACGACTCAACTCTGTTCCTTCCCTCAGAGCCGGCGATAACTCCTCCTTCTACGAACACTTCATCCTCTCTGGCATCCGAGTTGACCGAGTCCAACCCGGTCTCGTCTCCTGCACTTTCAAAGTCCCCTCGCGCCTCGCTGACAGGAGTGGGAAGTTGGCGAGTGGAGCAATTGCGAATCTGGTGGACGAGGTTGGAGGTGCTGTCATCCATGAAGAGGGTCTCCCCATGAATGTTTCCGTTGACATGTCTATTTCTTTTCTCTCATCTGTGAGAGTTGGCGTAAGTTATTACCATATACTGTACTAA

Predicted protein sequences of Glyma.02g224300

Limit To All Plant Sequences

>Glyma.02g224300.1.p sequence-type=predicted peptide transcript=Glyma.02g224300.1 locus=Glyma.02g224300 ID=Glyma.02g224300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEKVREMLRLTQQESVAMSRLNSVPSLRAGDNSSFYEHFILSGIRVDRVQPGLVSCTFKVPSRLADRSGKLASGAIANLVDEVGGAVIHEEGLPMNVSVDMSISFLSSVRVGDELEITSRLLGRKGGYSGTIVLLKNKATGELIAEGRHSLFGRHNSKM*

>Glyma.02g224300.2.p sequence-type=predicted peptide transcript=Glyma.02g224300.2 locus=Glyma.02g224300 ID=Glyma.02g224300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEKVREMLRLTQQESVAMSRLNSVPSLRAGDNSSFYEHFILSGIRVDRVQPGLVSCTFKVPSRLADRSGKLASGAIANLVDEVGGAVIHEEGLPMNVSVDMSISFLSSVRVGVSYYHILY*

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