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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma.02g221300

Feature Type:gene_model
Chromosome:Gm02
Start:40900121
stop:40918108
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g221300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G54090.1AT DNA mismatch repair protein MutS, type 2 JGI N/AIEA
GO:0006298GO-bp mismatch repair EnsemblGenomesN/AIEA
GO:0006298GO-bp mismatch repair JGI N/AIEA
GO:0045910GO-bp negative regulation of DNA recombination EnsemblGenomesN/AIEA
GO:0090305GO-bp nucleic acid phosphodiester bond hydrolysis EnsemblGenomesN/AIEA
GO:0032300GO-cc mismatch repair complex EnsemblGenomesN/AIEA
GO:0003684GO-mf damaged DNA binding EnsemblGenomesN/AIEA
GO:0004519GO-mf endonuclease activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0008094GO-mf DNA-dependent ATPase activity EnsemblGenomesN/AIEA
GO:0016887GO-mf ATPase activity EnsemblGenomesN/AIEA
GO:0030983GO-mf mismatched DNA binding EnsemblGenomesN/AIEA
GO:0030983GO-mf mismatched DNA binding JGI N/AIEA
PTHR11361Panther DNA MISMATCH REPAIR MUTS RELATED PROTEINS JGI N/AIEA
PTHR11361:SF6Panther JGI N/AIEA
PF00488PFAM MutS domain V JGI N/AIEA

Expression Patterns of Glyma.02g221300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g221300 not represented in the dataset
Glyma.02g221300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g221300
ParalogEvidenceComments
Glyma.14g188900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g221300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g38590 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g221300
>Glyma.02g221300.1 sequence-type=CDS polypeptide=Glyma.02g221300.1.p locus=Glyma.02g221300 ID=Glyma.02g221300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTATCTTTCGCCATAACCACTCATGCTTTCCCCGTTATTGCCATTAACAAATGGAAGCAGAGACATATGCAAAGGCAAATGCAAAGGGTGTCACTTTCAGCTTCCATTCACCATGACAGCTTGAGAGTGCTCGAATGGGACAAGCTTTGCGACTTGGTCGCTTCCTTCGCCACCACTTCCTTGGGCCGTCAAGCCCTCAAGGATCAGCTATGGTCTCTTAATCAAACTTTTGAGGAAAGTCTTAAACTTCTCGAGGAAACCAATGCTGCCGTTGAAATGAACAAGCATGGCACTCTCAGATTGCACTTGGGGCACCTTGATGCTATGCTGGTCAAAACCGCCATTCAACATGCCCGGAGAAGTATACCAGTGAGTGGTTATGAGGCACGGGCCATTGTGGCTCTTCTGCAGTGTGCTGAGATCGTGCAGGGTGATCTCAAGGCTGTAATTAAGGAAGACAAAGATTGGCATAATCGTTTCATGCCTCTTACAGAAGTGATAATGGAGTTTGTCATCAATAGATCTTTAATTAAAGCGATAGAGCAAGTGGTTGATGAAGATGGCTCTATTAAGGACTCTGCGAGTCCAGCCCTTAAGCAGGCACGGCAACAAGTTCAAGTGATTGAGAGAAAGGTACAACAGTTAATAGAGAGCATAATCAGGAATGAAAAGAGTGAAACATCAACCCTTGAAGTGAATAACATTGATGGCAGGTGGTGTGTAAGAGTAGATTCTGGACAGAAGACCAGTTTTAAGGGTCTATTGTTGTCCAGTGGATCCGGAGTTGGAAGTACTATAGAGCCACTTTCTGCTGTTCCTTTAAATGATGAGTTGCAGCGAGCAAGAAGTTTGGTGGTAAAGGCTGAAGCAGATGTGCTTTTGGCATTAACCAAAAAGCTGGACCTTGATGATATTGAGAAGACATTGAACAGTTTGGTTGAACTAGATGTGATCAATGCTCGTGCTACTTATGGTCTGTCATTTGGAGGGTCAAGTCCTCATATATTTCTGCCAGATAGGAGTAGCTCTTCTACTGCAGAAGCATTCTTACCAAGGAGCGAAAATCTCTATGGACCATTACCCAGCAAAAGGGAATGGACGCTATATCTTCTAAAAGCTTATCATCCTTTATTGCTCCAGAGACATAAGGAGAAATTGCGGAAGGCCAAAAAGAATGTCAATCTTGCTACTTCAGATGCTGCACTGGACAATGCTCCGCCAGTACCTGTTGATTTTTTGGTATCTCAGAAAACTCGTGTTATAGTTATAACTGGCCCTAATACTGGTGGTAAAACCATATGTTTGAAGACCGTAGGATTGGCTGCTATGATGGCAAAATCAGGTCTCTATGTTCTTGCTTCTGAATCTGCGCAAATTCCTTGGTTTGATTCTGTTTTTGCTGACATTGGTGATGAGCAGTCCTTATCACAATCTTTGTCTACGTTCTCTGGCCACTTGAAGCAGATAAGTAATATTAAATCACAGTCAACAAGCCAGTCGCTAGTGCTACTAGATGAGGTTGGTGCAGGAACAAACCCCCTTGAAGGAGCAGCACTAGGAATGGCATTATTGGAATCTTTTGCACAAGACAGTTGTTTGTTGACTATGGCTACAACTCATCATGGTGAATTGAAAACACTAAAATACAGTGATGAGGCCTTTGAAAATGCATGTATGGAGTTTGATGAAGTGAATTTGAAGCCAACATACAAGGTTCTTTGGGGTGTACCAGGCCGCTCAAATGCAATAAATATAGCCGAGAGGTTGGGACTACCATCTGTTGTTGTAGATACTGCTCGTATGTTATATGGTTCTGCTAGTGCAGAGATAGATGAGGTTATAACTGATATGGAAAGGTTAAAACAAGAATACCAAGAACTATTGGATGAAGCACGTCATTATCTGAGGCACTCCAGAGGACTTTACAATAGTCTATTGAACACCAGAAGGAAGATCATAGAATATAGTACTAATCTAAGATTTAAGAAGATGAGAGATGTGTCCGAGGCTGCAGCGATGGCAAGATCCATCCTTCACAAGAAAGTGAGGGAATTGGATGCATCAGCTAAGCAACCTTCACAGAATAATAAAACCATTAGCAGCTCTAATTTATCAGCAACCAACAAAAGCCAAACTGTTGCAGAGAACAAAGAACCCACTATTGCTGATAAAAGTGCATCTTCTGTTAAAGTTTTTAATCGATCAAGATCAGATAAATCTGGGCCTCCCAAGGTTGGTGATATGGTACATGTCTCTTCCCTCGGGAAACAGGTGACTGTTTTAAAAGTGGATTCATCCAAAGGAGAAATTGTAGTTCAAGCTGGAAACATGAAGTTGAAGCTGAAACTAACTGACATTCAAAGATCATAG
Predicted protein sequences of Glyma.02g221300
>Glyma.02g221300.1.p sequence-type=predicted peptide transcript=Glyma.02g221300.1 locus=Glyma.02g221300 ID=Glyma.02g221300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLSFAITTHAFPVIAINKWKQRHMQRQMQRVSLSASIHHDSLRVLEWDKLCDLVASFATTSLGRQALKDQLWSLNQTFEESLKLLEETNAAVEMNKHGTLRLHLGHLDAMLVKTAIQHARRSIPVSGYEARAIVALLQCAEIVQGDLKAVIKEDKDWHNRFMPLTEVIMEFVINRSLIKAIEQVVDEDGSIKDSASPALKQARQQVQVIERKVQQLIESIIRNEKSETSTLEVNNIDGRWCVRVDSGQKTSFKGLLLSSGSGVGSTIEPLSAVPLNDELQRARSLVVKAEADVLLALTKKLDLDDIEKTLNSLVELDVINARATYGLSFGGSSPHIFLPDRSSSSTAEAFLPRSENLYGPLPSKREWTLYLLKAYHPLLLQRHKEKLRKAKKNVNLATSDAALDNAPPVPVDFLVSQKTRVIVITGPNTGGKTICLKTVGLAAMMAKSGLYVLASESAQIPWFDSVFADIGDEQSLSQSLSTFSGHLKQISNIKSQSTSQSLVLLDEVGAGTNPLEGAALGMALLESFAQDSCLLTMATTHHGELKTLKYSDEAFENACMEFDEVNLKPTYKVLWGVPGRSNAINIAERLGLPSVVVDTARMLYGSASAEIDEVITDMERLKQEYQELLDEARHYLRHSRGLYNSLLNTRRKIIEYSTNLRFKKMRDVSEAAAMARSILHKKVRELDASAKQPSQNNKTISSSNLSATNKSQTVAENKEPTIADKSASSVKVFNRSRSDKSGPPKVGDMVHVSSLGKQVTVLKVDSSKGEIVVQAGNMKLKLKLTDIQRS*






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