Glyma.02g221100

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Report for Sequence Feature Glyma.02g221100

Feature Type:	gene_model
Chromosome:	Gm02
Start:	40889184
stop:	40891473
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.02g221100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G04635.1	AT	ribonuclease P family protein / Rpp14 family protein	JGI	N/A	IEA
GO:0008033	GO-bp	tRNA processing	EnsemblGenomes	N/A	IEA
GO:0008033	GO-bp	tRNA processing	JGI	N/A	IEA
GO:0009249	GO-bp	protein lipoylation	EnsemblGenomes	N/A	IEA
GO:0090501	GO-bp	RNA phosphodiester bond hydrolysis	EnsemblGenomes	N/A	IEA
GO:0004540	GO-mf	ribonuclease activity	EnsemblGenomes	N/A	IEA
GO:0004540	GO-mf	ribonuclease activity	JGI	N/A	IEA
KOG4639	KOG	RNase P/RNase MRP subunit POP5	JGI	N/A	IEA
PTHR10993	Panther	OCTANOYLTRANSFERASE	JGI	N/A	IEA
PTHR10993:SF1	Panther	NY	JGI	N/A	IEA
PF01900	PFAM	Rpp14/Pop5 family	JGI	N/A	IEA

Expression Patterns of Glyma.02g221100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g221100 not represented in the dataset	Glyma.02g221100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.02g221100

Paralog	Evidence	Comments
Glyma.14g188600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g221100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma02g38570	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.02g221100

Limit To All Plant Sequences

>Glyma.02g221100.2 sequence-type=transcript locus=Glyma.02g221100 ID=Glyma.02g221100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CACACCTGGCCCACGTCGCACTATTGGGCTTCACGGACTAAAAAAAGGCCCACGAGAAATACCCGACCCGTCTCTGACAATCGGATCTTATCTTCTAGGGTTTCTATTTTTCTTCCTTGCGCCAATGGAGTTTTGTTCTGAGAATTCGAATCTAGGATTTGTTTGAGCGTTCGCGAAGGATCATGGTGGGGTTCAGAAACAGATACATGGTTATGGAGGTTTTTCTGAACCCTAATAGGGACAAAGGTGGGGATGATTCTGTTATAGTTACACAGTTTAATGTCTCCAAAGCTGTAAGAGACAGCATATTGGTGAATTTTGGGGAGTGTGGTTTGGCTTCGTCATTGGGATCGTTTCAGGGAAGTATAAGGGCTTGTAAAAATGCTGCCTTGAAATGTGAGGAGTCAAAATTTGAGCAGTACAAACTCATGCTTGGTGATCGATTCTCTTCTGATCATACTCATCGCATGAATACCTATCTCGACAGGATCAAAGTTTTGGAGCATTGAATAAGTGGCCTACGAGGAGTGTCTCATTGAGATTTCTCAATTTTCTTGCAATTAGTTTGTGTTCAATCACAAGTTGCCTGCAATTATTGGTTAAATTTTAATCTCACGAATCATAGTGTGTGTGTGTGTTATCTACGTGAGTTCAGTGCACCCTCTTTTCACAGAAGATGCGGCTCCTGTTTAGTTTGTGCTCTGACATACCAATTTTTGTGAAGTGACATTACCTAGTGTATGGTATAGAGTTAACAGCTTTCAACCATGACAGAAGAGGCCTGTGAAAATATGTAAATTTGCACCTAAGTGTGGTCAGATTATTACATATTCATTGTAAATTACTAGACTATTTCTAGTTGTAGAACACATAATTACAAAGGAAAGTAGTTTTTTGAGCCTGCAGCTAGTTTCTTCTATTGTTTCACTTCAATTTTCTAG

Coding sequences of Glyma.02g221100

Limit To All Plant Sequences

>Glyma.02g221100.1 sequence-type=CDS polypeptide=Glyma.02g221100.1.p locus=Glyma.02g221100 ID=Glyma.02g221100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGGGGTTCAGAAACAGATACATGGTTATGGAGGTTTTTCTGAACCCTAATAGGGACAAAGGTGGGGATGATTCTGTTATAGTTACACAGTTTAATGTCTCCAAAGCTGTAAGAGACAGCATATTGGTGAATTTTGGGGAGTGTGGTTTGGCTTCGTCATTGGGATCGTTTCAGGTTAAGTATGTGAATCCAATCACTAATGTGTGTATAATTAGGGCTTCAAGGGAACAGTATCAGAAAGTATGGTCCGCCATTACAATGGTCACAAATATTGGAAACTGCCCGGTCATGTTTAACTTGCTGGATTTATCTGGAAGTATAAGGGCTTGTAAAAATGCTGCCTTGAAATGTGAGGAGTCAAAATTTGAGCAGTACAAACTCATGCTTGGTGATCGATTCTCTTCTGATCATACTCATCGCATGAATACCTATCTCGACAGGATCAAAGTTTTGGAGCATTGA

>Glyma.02g221100.2 sequence-type=CDS polypeptide=Glyma.02g221100.2.p locus=Glyma.02g221100 ID=Glyma.02g221100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGGGGTTCAGAAACAGATACATGGTTATGGAGGTTTTTCTGAACCCTAATAGGGACAAAGGTGGGGATGATTCTGTTATAGTTACACAGTTTAATGTCTCCAAAGCTGTAAGAGACAGCATATTGGTGAATTTTGGGGAGTGTGGTTTGGCTTCGTCATTGGGATCGTTTCAGGGAAGTATAAGGGCTTGTAAAAATGCTGCCTTGAAATGTGAGGAGTCAAAATTTGAGCAGTACAAACTCATGCTTGGTGATCGATTCTCTTCTGATCATACTCATCGCATGAATACCTATCTCGACAGGATCAAAGTTTTGGAGCATTGA

Predicted protein sequences of Glyma.02g221100

Limit To All Plant Sequences

>Glyma.02g221100.1.p sequence-type=predicted peptide transcript=Glyma.02g221100.1 locus=Glyma.02g221100 ID=Glyma.02g221100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVGFRNRYMVMEVFLNPNRDKGGDDSVIVTQFNVSKAVRDSILVNFGECGLASSLGSFQVKYVNPITNVCIIRASREQYQKVWSAITMVTNIGNCPVMFNLLDLSGSIRACKNAALKCEESKFEQYKLMLGDRFSSDHTHRMNTYLDRIKVLEH*

>Glyma.02g221100.2.p sequence-type=predicted peptide transcript=Glyma.02g221100.2 locus=Glyma.02g221100 ID=Glyma.02g221100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVGFRNRYMVMEVFLNPNRDKGGDDSVIVTQFNVSKAVRDSILVNFGECGLASSLGSFQGSIRACKNAALKCEESKFEQYKLMLGDRFSSDHTHRMNTYLDRIKVLEH*

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