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Report for Sequence Feature Glyma.02g218300

Feature Type:gene_model
Chromosome:Gm02
Start:40588552
stop:40592354
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g218300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G58290.1AT Glutamyl-tRNA reductase family protein JGI N/AIEA
GO:0006779GO-bp porphyrin-containing compound biosynthetic process EnsemblGenomesN/AIEA
GO:0006782GO-bp protoporphyrinogen IX biosynthetic process EnsemblGenomesN/AIEA
GO:0033014GO-bp tetrapyrrole biosynthetic process EnsemblGenomesN/AIEA
GO:0033014GO-bp tetrapyrrole biosynthetic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0008883GO-mf glutamyl-tRNA reductase activity EnsemblGenomesN/AIEA
GO:0008883GO-mf glutamyl-tRNA reductase activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0050661GO-mf NADP binding EnsemblGenomesN/AIEA
GO:0050661GO-mf NADP binding JGI N/AIEA
PTHR13812Panther ORNITHINE CYCLODEAMINASE-RELATED JGI N/AIEA
PTHR13812:SF14Panther JGI N/AIEA
PF00745PFAM Glutamyl-tRNAGlu reductase, dimerisation domain JGI N/AIEA
PF01488PFAM Shikimate / quinate 5-dehydrogenase JGI N/AIEA
PF05201PFAM Glutamyl-tRNAGlu reductase, N-terminal domain JGI N/AIEA
PWY-5188SoyCyc9 tetrapyrrole biosynthesis I (from glutamate) Plant Metabolic Network ISS
PWY-5918SoyCyc9 superpathay of heme b biosynthesis from glutamate Plant Metabolic Network ISS
GN7V-60520SoyCyc9-rxn glutamyl-tRNA reductase Plant Metabolic Network ISS

Proteins Associated with Glyma.02g218300
LocusGene SymbolProtein Name
GTR1 glutamyl-tRNA reductase 1

Expression Patterns of Glyma.02g218300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g218300
ParalogEvidenceComments
Glyma.14g185700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g218300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g38280 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g218300
>Glyma.02g218300.1 sequence-type=CDS polypeptide=Glyma.02g218300.1.p locus=Glyma.02g218300 ID=Glyma.02g218300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGTTTCAACAAGTTTCCCTGGTGCAAAGTTGGAGGCTTTGTTGCTGAAATGTGGCTCCTCCAATGCTGCCACTGCCACTGCCACCACCACCACCCATTTGTCATGTTTTTGCAAAACCAGAAAGACACTTGTTCAGAGTCAGAGAGGGCCTATTCGCTGTGAGGCTTCTTCTGCTTCTGATGTTGTGGCTGATGCCACTAAGAAAGCTGCTAGTGTCTCTGCTCTTGAACAGCTTAAGACCTCTGCAGCTGATAGGTATACAAAGGAAAGGAGCAGCGTCATGGTTATTGGACTGAGTGTGCATAGTACGCCTGTGGAAATGCGTGAAAAGCTTGCCATACCAGAAGCAGAATGGCCTCGAGCCATTGCGGAGCTTTGTAGTCTGAATCACATTGAGGAAGCAGCTGTTCTGAGCACCTGCAACAGAATGGAAATATATGTTGTTGCTCTGTCCAAGCACCGTGGTGTTAAAGAAGTCACTGAATGGATGTCCAAAACAAGTGGGATTCCAGTTGCAGATCTTTGCCAGCATCAGTTTCTGCTATACAACAAAGATGCCACACAACACCTTTTTGAAGTATCTGCAGGTCTTGATTCTCTAGTGTTGGGAGAAGGTCAAATCCTTGCCCAGGTGAAGCAGGTTGTCAAAGTTGGACAAGGAGTGAATGGCTTTGGGAGGAACATTAGTGGACTATTCAAGCATGCAATCACTGTGGGGAAGAGGGTTAGAACTGAGACAAACATTGCTGCTGGTGCAGTTTCTGTTAGCTCAGCAGCTGTTGAACTGGCCCTGATGAAGCTACCTGAAGCCTCACATGCCAATGCAAGGATGTTGGTCATTGGAGCTGGGAAGATGGGAAAGCTTGTGATCAAGCATTTGGTGGCAAAAGGGTGCACAAAGATGGTGGTTGTCAATAGAAGTGAGGAGAGAGTTGCCGCGATCCATGAAGAAATCAAGGATGTTGAGATAATCTACAAGCCACTCTCGGAGATGCTCACATGCATTGGTGAGGCAGATGTGGTTTTCACCAGCACAGCATCAGAGAATCCACTGTTCTTGAAGGATGATGTCAAGGAACTTCCTCCCGCCACCGATGAAGTCGGCGGCCGTCGCCTTTTCGTCGATATATCTGTTCCTAGGAATGTTGGATCATGTCTCTCAGACCTTGAGTCTGTGAGAGTGTACAATGTTGATGACCTTAAGGAGGTTGTGGCAGCCAACAAAGAGGATAGGCTAAGAAAAGCCATGGAGGCTCAAGCAATCATTGGTGAAGAATCAAAACAATTTGAGGCTTGGAGAGACTCATTGGAAACTGTTCCTACCATTAAAAAGTTGAGGGCATATGCTGAAAGAATAAGGCTTGCTGAGCTTGAGAAGTGCCTAGGTAAGATGGGTGATGATATCAACAAGAAGACACAAAGAGCTGTGGATGATCTTAGCAGGGGTATAGTGAATAAGTTGCTTCATGGGCCAATGCAACACTTGAGGTGTGATGGCAGTGACAGCAGGACTCTAAGTGAGACCCTTGAGAACATGCATGCTTTGAATAGAATGTTCAACCTTGAGACTGAAATATCTGTTTTGGAGCAGAAGATTCGAGCCAAGGTGGAGCAAAAGCCATAG
Predicted protein sequences of Glyma.02g218300
>Glyma.02g218300.1.p sequence-type=predicted peptide transcript=Glyma.02g218300.1 locus=Glyma.02g218300 ID=Glyma.02g218300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAVSTSFPGAKLEALLLKCGSSNAATATATTTTHLSCFCKTRKTLVQSQRGPIRCEASSASDVVADATKKAASVSALEQLKTSAADRYTKERSSVMVIGLSVHSTPVEMREKLAIPEAEWPRAIAELCSLNHIEEAAVLSTCNRMEIYVVALSKHRGVKEVTEWMSKTSGIPVADLCQHQFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVNGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELALMKLPEASHANARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIHEEIKDVEIIYKPLSEMLTCIGEADVVFTSTASENPLFLKDDVKELPPATDEVGGRRLFVDISVPRNVGSCLSDLESVRVYNVDDLKEVVAANKEDRLRKAMEAQAIIGEESKQFEAWRDSLETVPTIKKLRAYAERIRLAELEKCLGKMGDDINKKTQRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLSETLENMHALNRMFNLETEISVLEQKIRAKVEQKP*






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