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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G28210.2 | AT | DNAJ heat shock family protein | JGI | N/A | IEA |
| GO:0006457 | GO-bp | protein folding | EnsemblGenomes | N/A | IEA |
| GO:0009408 | GO-bp | response to heat | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0031072 | GO-mf | heat shock protein binding | EnsemblGenomes | N/A | IEA |
| GO:0031072 | GO-mf | heat shock protein binding | JGI | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0051082 | GO-mf | unfolded protein binding | EnsemblGenomes | N/A | IEA |
| GO:0051082 | GO-mf | unfolded protein binding | JGI | N/A | IEA |
| KOG0715 | KOG | Molecular chaperone (DnaJ superfamily) | JGI | N/A | IEA |
| PTHR24076 | Panther | FAMILY NOT NAMED | JGI | N/A | IEA |
| PTHR24076:SF80 | Panther | CHAPERONE PROTEIN DNAJ 10-RELATED | JGI | N/A | IEA |
| PF00226 | PFAM | DnaJ domain | JGI | N/A | IEA |
| PF00684 | PFAM | DnaJ central domain | JGI | N/A | IEA |
| PF01556 | PFAM | DnaJ C terminal domain | JGI | N/A | IEA |
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Glyma.02g211200 not represented in the dataset |
Glyma.02g211200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.14g178800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma02g37391 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.02g211200.1 sequence-type=CDS polypeptide=Glyma.02g211200.1.p locus=Glyma.02g211200 ID=Glyma.02g211200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAGAAGGTTCGCGTGGTTCACGCCGTATCGGCGCCATTTACTTTCGTCTCTGACTTCAGAATCCCTCGTGGATAAAGGAGAATCAACCTTCACCAAATTCTCGTCGTCTCGCCAATCGTTTTTGCTCGCTCGAGCTTTGGTCAATTGCGGGTTCGTCACGAAAACGGAGGAGTCCCGGATTCCGAGAGTACCGTTAAGATATCGTTATTTTCATGCCACAGCATTTTCTTCGTCAGCTGACCGAGACCATTATGGAACTCTTGGTGTTCCTGAAAATGCCAGTCAGGATGAGATAAAGAAGGCATTTCACTCGCTTGCTAAAAAGTACCATCCAGATGCAAATAAGAATAATCCATCTGCTAAGAGGAAATTTCAAGATATAAGAGAAGCTTACGAGACATTGAGAGACTCTAAAAAGAGAGCAGAGTATGACAAGATGCGTACTCGCGGTTCAGAAGACATAGAATATGATCGTGATGATGCAGAAAGGTTTAGAAATGCTTATCGTTCTCATTTTTCTGATTCATTTCATAAAGTATTCTATGAGATATTTGAAGAAGCAACAACTCAATTCTCATCAAATATAGAGGTGGAGTTGTCTCTTACTTTCTCAGAAGCAGCGAGAGGATGCACCAAACATGTGTCATTTGATGCATTAGTTCCATGCGATCATTGCAATGGGCAGGGCTATCCACTTGATGCCATCCCAAAAGTTTGTCCAACATGCAGGGGCTCGGGTCGTGTTACAATCCCCCCATTTACGTCAACATGCATTACTTGTAAAGGATCAGGCCGAATCATTAAGGACTCTTGTCTAACATGTGGAGGATCTGGGGCGGTTGAAGGGGTTAAAGAGGTTAAAGTTACAATACCAGCAGGTGTGGATTCAGGAGATACAATCCATGTGCCAGAAGGTGGGAATGCTGCTGGAAGTGGAGGTCGACCTGGAAGTTTATACATTAAAATAAAGGTGACTGAGGATTCAATCTTTGTCAGAGATGGTGCAGATATCTATGTGGATTCCAATATTAGCTTTACACAGGCTATTCTTGGGGGCAAAGTTGAAGTGCCTACTTTATCTGGGAAGATGCAGTTAAAAATACCCAAGGGTGTTCAACATGGACAGCTTCTAGTATTAAGAGGCAAAGGACTACCAAAGCATGGATTTCTTGTACATCATGGGGATCAGTATGTACGATTCCGTGTTAACCTTCCCATTGAAATCAATGAACGACAACGTGCTATACTTGAAGAACTTGCAAAGGAGGAAATAAAGGAGGGAAACAACTCTTCATTTGAAGGAAATTGGTGGAAGCAAATTCTTGAACACACGATGGGTCCAAAGTATATGCTGGAACTATCTATGCTGATATTATTCCTTATCTTCATTAAAAAAGTGTTGAGCTGA
>Glyma.02g211200.1.p sequence-type=predicted peptide transcript=Glyma.02g211200.1 locus=Glyma.02g211200 ID=Glyma.02g211200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MRRFAWFTPYRRHLLSSLTSESLVDKGESTFTKFSSSRQSFLLARALVNCGFVTKTEESRIPRVPLRYRYFHATAFSSSADRDHYGTLGVPENASQDEIKKAFHSLAKKYHPDANKNNPSAKRKFQDIREAYETLRDSKKRAEYDKMRTRGSEDIEYDRDDAERFRNAYRSHFSDSFHKVFYEIFEEATTQFSSNIEVELSLTFSEAARGCTKHVSFDALVPCDHCNGQGYPLDAIPKVCPTCRGSGRVTIPPFTSTCITCKGSGRIIKDSCLTCGGSGAVEGVKEVKVTIPAGVDSGDTIHVPEGGNAAGSGGRPGSLYIKIKVTEDSIFVRDGADIYVDSNISFTQAILGGKVEVPTLSGKMQLKIPKGVQHGQLLVLRGKGLPKHGFLVHHGDQYVRFRVNLPIEINERQRAILEELAKEEIKEGNNSSFEGNWWKQILEHTMGPKYMLELSMLILFLIFIKKVLS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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