Glyma.02g208400

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Report for Sequence Feature Glyma.02g208400

Feature Type:	gene_model
Chromosome:	Gm02
Start:	39341234
stop:	39345801
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.02g208400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G22410.1	AT	Class-II DAHP synthetase family protein	JGI	N/A	IEA
GO:0008652	GO-bp	cellular amino acid biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0009073	GO-bp	aromatic amino acid family biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0009073	GO-bp	aromatic amino acid family biosynthetic process	JGI	N/A	IEA
GO:0009423	GO-bp	chorismate biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0009507	GO-cc	chloroplast	EnsemblGenomes	N/A	IEA
GO:0009536	GO-cc	plastid	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
GO:0003849	GO-mf	3-deoxy-7-phosphoheptulonate synthase activity	EnsemblGenomes	N/A	IEA
GO:0003849	GO-mf	3-deoxy-7-phosphoheptulonate synthase activity	JGI	N/A	IEA
GO:0016740	GO-mf	transferase activity	EnsemblGenomes	N/A	IEA
PTHR21337	Panther	PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1, 2	JGI	N/A	IEA
PF01474	PFAM	Class-II DAHP synthetase family	JGI	N/A	IEA
ARO-PWY	SoyCyc9	chorismate biosynthesis I	Plant Metabolic Network		ISS
PWY-6164	SoyCyc9	3-dehydroquinate biosynthesis I	Plant Metabolic Network		ISS
GN7V-60346	SoyCyc9-rxn	3-deoxy-7-phosphoheptulonate synthase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.02g208400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g208400 not represented in the dataset	Glyma.02g208400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.02g208400

Paralog	Evidence	Comments
Glyma.14g176600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g208400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma02g37080	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.02g208400

Limit To All Plant Sequences

>Glyma.02g208400.2 sequence-type=transcript locus=Glyma.02g208400 ID=Glyma.02g208400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCACAATCCCTTTGTGACTCCAAACACACCAATTGCATTTGCATTACCATTCACAATGGcaatctcctccacttccaactccctcattcccaccaaatctctaatcccccaatcccaccccctcattcccAACACCAGGCCCGCCCTCCGGCCCAAGCCCGGCCCATCCCCTTCCATCTTCGCCGTTCACGCCGCCGAGCCCGCCAAAAACCCCGTCGTCACCGACAAGCCCAAGCCCCAAGCCCAACAACCTCCCCCGGCCTCGGCCCGGGCAACGAAATGGGCCGTGGACAGCTGGAAGTCAAAGAAAGCCCTGCAGCTGCCCGAATACCCGAGCCAGGAGGAGCTGGAGTCCGTCCTCAAAACCCTCGAGGCTTTTCCTCCAATCGTCTTCGCCGGTGAGGCCAGGACATTGGAGGAGCATCTCGCCGAGGCCGCCATGGGAAATGCCTTCCTCCTCCAGGGCGGAGACTGTGCTGAGAGCTTCAAGGAGTTCAATGCCAACAACATCCGTGACACCTTCCGCATCATCCTCCAGATGAGCGTCGTCATGATGTTCGGCGGCCAAATGCCTGTCATCAAGGTGGGGAGAATGGCGGGGCAATTTGCAAAGCCTCGTTCGGATTCGTTTGAGGAGAAGAATGGCGTGAAGCTTCCGAGTTACAGAGGGGATAACATTAACGGAGACTCTTTCGACGAGAAGTCGAGGATTCCGGATCCGCAGAGGATGATTAGGGCTTATTGCCAAGCCGCGGCCACGCTGAATCTTCTCAGAGCTTTTGCCACCGGTGGTTATGCTGCTATGCAGAGGGTTACTCAGTGGAATTTGGACTTCACGGATCACAGCGAACAGGGAGATAGGTACCGAGAGCTTGCTAACCGAGTTGATGAGGCCCTTGGATTCATGGCTGCTGCTGGGCTCACGGTGGACCATCCCATAATGAGAACAACTGAATTCTGGACATCTCATGAGTGCTTATTGTTGCCTTATGAACAATCCCTCACAAGGTTGGATTCAACTTCTGGTCTCTACTATGACTGTTCAGCCCATATGATCTGGGTTGGAGAACGAACCAGGCAGCTTGATGGTGCCCATGTTGAGTTTCTAAGAGGAGTTGCTAATCCCTTGGGAATTAAGGTAAGTGACAAGATGGATCCAAATGAGCTAGTTAAACTCATTGAGATCTTGAATCCTCAAAACAAAGCAGGAAGAATTACTGTGATCACGAGGATGGGAGCTGAAAATATGAGGGTGAAGCTTCCACATCTCATCAGGGCAGTGCGCAGAGCAGGCCAAATTGTCACTTGGGTCAGTGATCCTATGCATGGAAACACCATTAAGGCTCCCTGTGGTCTTAAAACTCGCCCCTTCGATTCCATCAGGGTATAATTCTGGTGTCTCTTTCTATTTCAATTGGTCATTGGTGGCTGTTGAGTAGCTTTAAATATGTGCATGTTAGGATTAAAATCAAATTTCAGTTATTGTCCACTTCCTCAGAAAAAAATATAATCATTTCACTCTGCTTGTCACATAAACTTTGGATAAAT

Coding sequences of Glyma.02g208400

Limit To All Plant Sequences

>Glyma.02g208400.1 sequence-type=CDS polypeptide=Glyma.02g208400.1.p locus=Glyma.02g208400 ID=Glyma.02g208400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAATCTCCTCCACTTCCAACTCCCTCATTCCCACCAAATCTCTAATCCCCCAATCCCACCCCCTCATTCCCAACACCAGGCCCGCCCTCCGGCCCAAGCCCGGCCCATCCCCTTCCATCTTCGCCGTTCACGCCGCCGAGCCCGCCAAAAACCCCGTCGTCACCGACAAGCCCAAGCCCCAAGCCCAACAACCTCCCCCGGCCTCGGCCCGGGCAACGAAATGGGCCGTGGACAGCTGGAAGTCAAAGAAAGCCCTGCAGCTGCCCGAATACCCGAGCCAGGAGGAGCTGGAGTCCGTCCTCAAAACCCTCGAGGCTTTTCCTCCAATCGTCTTCGCCGGTGAGGCCAGGACATTGGAGGAGCATCTCGCCGAGGCCGCCATGGGAAATGCCTTCCTCCTCCAGGGCGGAGACTGTGCTGAGAGCTTCAAGGAGTTCAATGCCAACAACATCCGTGACACCTTCCGCATCATCCTCCAGATGAGCGTCGTCATGATGTTCGGCGGCCAAATGCCTGTCATCAAGGTGGGGAGAATGGCGGGGCAATTTGCAAAGCCTCGTTCGGATTCGTTTGAGGAGAAGAATGGCGTGAAGCTTCCGAGTTACAGAGGGGATAACATTAACGGAGACTCTTTCGACGAGAAGTCGAGGATTCCGGATCCGCAGAGGATGATTAGGGCTTATTGCCAAGCCGCGGCCACGCTGAATCTTCTCAGAGCTTTTGCCACCGGTGGTTATGCTGCTATGCAGAGGGTTACTCAGTGGAATTTGGACTTCACGGATCACAGCGAACAGGGAGATAGGTACCGAGAGCTTGCTAACCGAGTTGATGAGGCCCTTGGATTCATGGCTGCTGCTGGGCTCACGGTGGACCATCCCATAATGAGAACAACTGAATTCTGGACATCTCATGAGTGCTTATTGTTGCCTTATGAACAATCCCTCACAAGGTTGGATTCAACTTCTGGTCTCTACTATGACTGTTCAGCCCATATGATCTGGGTTGGAGAACGAACCAGGCAGCTTGATGGTGCCCATGTTGAGTTTCTAAGAGGAGTTGCTAATCCCTTGGGAATTAAGGTAAGTGACAAGATGGATCCAAATGAGCTAGTTAAACTCATTGAGATCTTGAATCCTCAAAACAAAGCAGGAAGAATTACTGTGATCACGAGGATGGGAGCTGAAAATATGAGGGTGAAGCTTCCACATCTCATCAGGGCAGTGCGCAGAGCAGGCCAAATTGTCACTTGGGTCAGTGATCCTATGCATGGAAACACCATTAAGGCTCCCTGTGGTCTTAAAACTCGCCCCTTCGATTCCATCAGGGCCGAAGTGAGAGCATTCTTCGACGTACACGAGCAAGAAGGAAGCCACCCAGGAGGGGTTCATCTAGAGATGACGGGTCAGAATGTGACCGAGTGCATTGGTGGGTCAAGGACGGTCACATTTGATGACTTGAGCTCACGTTACCACACACACTGTGACCCAAGGCTCAATGCTTCACAATCTCTTGAGCTTGCTTTCATCATCGCTGAGCGTTTGAGAAAGAGCAGGATCAGATCGCAGCAACCTCTTGCCCCTCTAGGAGTACTGTAA

>Glyma.02g208400.2 sequence-type=CDS polypeptide=Glyma.02g208400.2.p locus=Glyma.02g208400 ID=Glyma.02g208400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAATCTCCTCCACTTCCAACTCCCTCATTCCCACCAAATCTCTAATCCCCCAATCCCACCCCCTCATTCCCAACACCAGGCCCGCCCTCCGGCCCAAGCCCGGCCCATCCCCTTCCATCTTCGCCGTTCACGCCGCCGAGCCCGCCAAAAACCCCGTCGTCACCGACAAGCCCAAGCCCCAAGCCCAACAACCTCCCCCGGCCTCGGCCCGGGCAACGAAATGGGCCGTGGACAGCTGGAAGTCAAAGAAAGCCCTGCAGCTGCCCGAATACCCGAGCCAGGAGGAGCTGGAGTCCGTCCTCAAAACCCTCGAGGCTTTTCCTCCAATCGTCTTCGCCGGTGAGGCCAGGACATTGGAGGAGCATCTCGCCGAGGCCGCCATGGGAAATGCCTTCCTCCTCCAGGGCGGAGACTGTGCTGAGAGCTTCAAGGAGTTCAATGCCAACAACATCCGTGACACCTTCCGCATCATCCTCCAGATGAGCGTCGTCATGATGTTCGGCGGCCAAATGCCTGTCATCAAGGTGGGGAGAATGGCGGGGCAATTTGCAAAGCCTCGTTCGGATTCGTTTGAGGAGAAGAATGGCGTGAAGCTTCCGAGTTACAGAGGGGATAACATTAACGGAGACTCTTTCGACGAGAAGTCGAGGATTCCGGATCCGCAGAGGATGATTAGGGCTTATTGCCAAGCCGCGGCCACGCTGAATCTTCTCAGAGCTTTTGCCACCGGTGGTTATGCTGCTATGCAGAGGGTTACTCAGTGGAATTTGGACTTCACGGATCACAGCGAACAGGGAGATAGGTACCGAGAGCTTGCTAACCGAGTTGATGAGGCCCTTGGATTCATGGCTGCTGCTGGGCTCACGGTGGACCATCCCATAATGAGAACAACTGAATTCTGGACATCTCATGAGTGCTTATTGTTGCCTTATGAACAATCCCTCACAAGGTTGGATTCAACTTCTGGTCTCTACTATGACTGTTCAGCCCATATGATCTGGGTTGGAGAACGAACCAGGCAGCTTGATGGTGCCCATGTTGAGTTTCTAAGAGGAGTTGCTAATCCCTTGGGAATTAAGGTAAGTGACAAGATGGATCCAAATGAGCTAGTTAAACTCATTGAGATCTTGAATCCTCAAAACAAAGCAGGAAGAATTACTGTGATCACGAGGATGGGAGCTGAAAATATGAGGGTGAAGCTTCCACATCTCATCAGGGCAGTGCGCAGAGCAGGCCAAATTGTCACTTGGGTCAGTGATCCTATGCATGGAAACACCATTAAGGCTCCCTGTGGTCTTAAAACTCGCCCCTTCGATTCCATCAGGGTATAA

Predicted protein sequences of Glyma.02g208400

Limit To All Plant Sequences

>Glyma.02g208400.1.p sequence-type=predicted peptide transcript=Glyma.02g208400.1 locus=Glyma.02g208400 ID=Glyma.02g208400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAISSTSNSLIPTKSLIPQSHPLIPNTRPALRPKPGPSPSIFAVHAAEPAKNPVVTDKPKPQAQQPPPASARATKWAVDSWKSKKALQLPEYPSQEELESVLKTLEAFPPIVFAGEARTLEEHLAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRIILQMSVVMMFGGQMPVIKVGRMAGQFAKPRSDSFEEKNGVKLPSYRGDNINGDSFDEKSRIPDPQRMIRAYCQAAATLNLLRAFATGGYAAMQRVTQWNLDFTDHSEQGDRYRELANRVDEALGFMAAAGLTVDHPIMRTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHMIWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVKLIEILNPQNKAGRITVITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKSRIRSQQPLAPLGVL*

>Glyma.02g208400.2.p sequence-type=predicted peptide transcript=Glyma.02g208400.2 locus=Glyma.02g208400 ID=Glyma.02g208400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAISSTSNSLIPTKSLIPQSHPLIPNTRPALRPKPGPSPSIFAVHAAEPAKNPVVTDKPKPQAQQPPPASARATKWAVDSWKSKKALQLPEYPSQEELESVLKTLEAFPPIVFAGEARTLEEHLAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRIILQMSVVMMFGGQMPVIKVGRMAGQFAKPRSDSFEEKNGVKLPSYRGDNINGDSFDEKSRIPDPQRMIRAYCQAAATLNLLRAFATGGYAAMQRVTQWNLDFTDHSEQGDRYRELANRVDEALGFMAAAGLTVDHPIMRTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHMIWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVKLIEILNPQNKAGRITVITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRV*

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