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Report for Sequence Feature Glyma.02g204000

Feature Type:gene_model
Chromosome:Gm02
Start:38943284
stop:38948313
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g204000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G30920.1AT Cytosol aminopeptidase family protein JGI N/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0006508GO-bp proteolysis JGI N/AIEA
GO:0019538GO-bp protein metabolic process EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0004177GO-mf aminopeptidase activity EnsemblGenomesN/AIEA
GO:0004177GO-mf aminopeptidase activity JGI N/AIEA
GO:0008235GO-mf metalloexopeptidase activity EnsemblGenomesN/AIEA
GO:0030145GO-mf manganese ion binding EnsemblGenomesN/AIEA
KOG2597 KOG Predicted aminopeptidase of the M17 family JGI N/AIEA
PTHR11963Panther LEUCINE AMINOPEPTIDASE-RELATED JGI N/AIEA
PF00883PFAM Cytosol aminopeptidase family, catalytic domain JGI N/AIEA
PF02789PFAM Cytosol aminopeptidase family, N-terminal domain JGI N/AIEA

Expression Patterns of Glyma.02g204000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g204000
ParalogEvidenceComments
Glyma.17g073800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g204000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g36530 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g204000
>Glyma.02g204000.1 sequence-type=CDS polypeptide=Glyma.02g204000.1.p locus=Glyma.02g204000 ID=Glyma.02g204000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGCCATTGCTACCATTTTCGTTTCTATCATACCCACTTCGCCTTCTCCGTTTCTCACTAGACTCACATCGCGCCTCCATTTCGCTGCATTCCCTCTGCGTTCTCCAACGAGGAAACTCATGTCGCACACTCTTGCACGTGCCACTCTTGGTCTCACACACCCTTCTAATATCGAAACCCCCAAGATCTCTTTTGGTGCTAAGGATGTTGATGTGACGGAATGGAAAGGGGACATTCTGGCAGTGGGTGTTACGGAAAAAGATTTGGCTAGAGATGCAAACTCGAAGTTTGAGAATGTGATTTTGAGCAAGATTGACTCAAAGTTGGGTGGTTTATTAGCTGAAGCCTCTTCTGAAGAGGATTTCTCTGGCAAAGTTGGTCAGTCAACTGTTCTTAGAATTACAGGACTTGGATCAAAAAGGGTTGGATTGATTGGTCTTGGTCAGTCACCTTCCACTCCTGCACCTTTTAAGAGTCTTGGCGAGGCCATTGTGGCGGCTGCCAAGTCTTCTCAAGCAAGCAGTGTTGCTGTTGCTCTTGCCTCTTCTGAAGGACTCTCCGCACAATCAAAGCTTAGCACTGCTTATGCAATTGCTTCTGGGGCTGTGCTGGGATTATTTGAAGATAATAGATACAAATCAGAAGCAAAGAAATCAACACTAAGGTCCATTGACTTTATTGGTCTTGGGACAGGACCTGAACTGGAGAAGAAACTGAAGTACGCAGGAGATGTTTCTTCCGGAATTATCTTTGGAAGGGAGCTTGTAAATTCTCCTGCTAATGTGCTCACACCAGGGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCCACCTACAGTGATGTTTTCACTGCTAAAATATTAAATTCTGAGCAATGTGCAGAATTGAAAATGGGGTCCTATCTGGGTGTTGCTGCAGCCTCGGCTAATCCTCCTCATTTTATCCATCTATGTTACAAACCTCTGAGTGGACCTGTCAATGTCAAGTTGGCATTAGTTGGAAAAGGTTTGACTTTTGACAGTGGTGGCTACAACATCAAGACTGGACCTGGCTGTTCAATTGAGCTCATGAAATTTGATATGGGTGGTTCAGCAGCAGTTTTAGGAACAGCAAAAGCTCTCGGTCAAATCAAACCTCTTGGGGTGGAGGTTCATTTTATAGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAGGTTAACAACACTGATGCTGAAGGTAGACTTACCCTGGCAGATGCTCTGGTATATGCTTGTAACCAAGGTGTTGAAAAGATTATTGACTTGGCAACCTTGACTGGGGCTTGTGTTGTTGCTCTTGGACCCTCAATTGCTGGTGTGTTTACACCCTGTGATGACCTAGCAAAGGAAGTTTTTGAAGCTTCTGATGTGAGTGGGGAGAAACTATGGCGGCTGCCATTAGAGGAAAGTTACTGGGAAACAATGAAATCAGGAGTTGCTGATATGTTGAACACTGGTGGTCGACAAGGTGGTGCTATTGTTGCTGCTCTCTTCCTGAAACAGTTTGTTGATGAAAAGGTTCAATGGATGCACATTGACATGGCTGGTCCTGTGTGGAATGACAAGAAGCGCTCAGCAACAGGATTTGGCATTGCTACTTTAGTGGAATGGGTTTTGAAAAATGCTTCAAATGCCAACTGA
Predicted protein sequences of Glyma.02g204000
>Glyma.02g204000.1.p sequence-type=predicted peptide transcript=Glyma.02g204000.1 locus=Glyma.02g204000 ID=Glyma.02g204000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAIATIFVSIIPTSPSPFLTRLTSRLHFAAFPLRSPTRKLMSHTLARATLGLTHPSNIETPKISFGAKDVDVTEWKGDILAVGVTEKDLARDANSKFENVILSKIDSKLGGLLAEASSEEDFSGKVGQSTVLRITGLGSKRVGLIGLGQSPSTPAPFKSLGEAIVAAAKSSQASSVAVALASSEGLSAQSKLSTAYAIASGAVLGLFEDNRYKSEAKKSTLRSIDFIGLGTGPELEKKLKYAGDVSSGIIFGRELVNSPANVLTPGVLAEEAAKIASTYSDVFTAKILNSEQCAELKMGSYLGVAAASANPPHFIHLCYKPLSGPVNVKLALVGKGLTFDSGGYNIKTGPGCSIELMKFDMGGSAAVLGTAKALGQIKPLGVEVHFIVAACENMISGTGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALVYACNQGVEKIIDLATLTGACVVALGPSIAGVFTPCDDLAKEVFEASDVSGEKLWRLPLEESYWETMKSGVADMLNTGGRQGGAIVAALFLKQFVDEKVQWMHIDMAGPVWNDKKRSATGFGIATLVEWVLKNASNAN*






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