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Report for Sequence Feature Glyma.02g196800

Feature Type:gene_model
Chromosome:Gm02
Start:37333447
stop:37336731
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g196800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06370.1AT NC domain-containing protein-related JGI N/AIEA
PTHR13943Panther HRAS-LIKE SUPPRESSOR - RELATED JGI N/AIEA
PTHR13943:SF16Panther JGI N/AIEA
PF04970PFAM Lecithin retinol acyltransferase JGI N/AIEA
LIPASYN-PWYSoyCyc9 phospholipases Plant Metabolic Network ISS
PWY-6803SoyCyc9 phosphatidylcholine acyl editing Plant Metabolic Network ISS
PWY-7416SoyCyc9 phospholipid remodeling (phosphatidylcholine, yeast) Plant Metabolic Network ISS
GN7V-66417SoyCyc9-rxn phospholipase A1 Plant Metabolic Network ISS

Expression Patterns of Glyma.02g196800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g196800 not represented in the dataset
Glyma.02g196800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g196800
ParalogEvidenceComments
Glyma.10g081500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g196800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g35490 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g196800
>Glyma.02g196800.1 sequence-type=CDS polypeptide=Glyma.02g196800.1.p locus=Glyma.02g196800 ID=Glyma.02g196800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGACTTCTGTCTAACAGAGTAACTAGAGAGAGCCTGAAACCAGGGGATCACATCTACTCTTGGAGGACTGCGTATATATATGCTCATCACGGCATCTATGTCAGTGATGACAAAGTCATTCACTTCACTAGACGTGGCCAAGAAGTAGGAACCGGTACTGCACTAGATCTTCTCCTCATTAGTTCAGGACCAGCCAAGTCTCGAGAAAGTTGCCCTACTTGTATGGCACCCCAAGAGGAACACGGGGTTATCTCCTCATGCCTGAACTGCTTCCTAGCTGGTGGGGTCCTGTATCGGTTCGAGTATGCCGTTACCCCTGCCCTCTTCCTTGCAAAAGCCCGCGGTGGAACATGTACTCTTGCAGTCTCTGATAGTGATGATATCGTCATCCATCGAGCAAAATACCTGCTCGAAAATGGCTTTGGGTGCTATAATGTTTTCAAGAAAAACTGTGAAGACTTTGCTATCTATTGCAAAACCGGGCTCCTAGAAATCGGACAAAGTGGCCAAGCAGTTTCCATCATAGGGGGACCTCTTGCTGCTGCTCTATCCTCGCCCCTCCGTATGGTTACTACTAACGTTTATGGAATGGCAGCGACGGCGGTTGGAGTCTACTGTGCTAGTAGGTATATGGCAGACATTGGAATGAGGCCTAATGCGGTGAAGGTACCGGTTGAACAGTTAACCACAAGGTTGGCCACTGGCTTGCTGCAAGTGGTTGAACCCCAAATTCCAACGAATATTTCTCGTCAATCTCCTCAGCTTGTTACTCAATGA
Predicted protein sequences of Glyma.02g196800
>Glyma.02g196800.1.p sequence-type=predicted peptide transcript=Glyma.02g196800.1 locus=Glyma.02g196800 ID=Glyma.02g196800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGLLSNRVTRESLKPGDHIYSWRTAYIYAHHGIYVSDDKVIHFTRRGQEVGTGTALDLLLISSGPAKSRESCPTCMAPQEEHGVISSCLNCFLAGGVLYRFEYAVTPALFLAKARGGTCTLAVSDSDDIVIHRAKYLLENGFGCYNVFKKNCEDFAIYCKTGLLEIGQSGQAVSIIGGPLAAALSSPLRMVTTNVYGMAATAVGVYCASRYMADIGMRPNAVKVPVEQLTTRLATGLLQVVEPQIPTNISRQSPQLVTQ*






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