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Report for Sequence Feature Glyma.02g182900

Feature Type:gene_model
Chromosome:Gm02
Start:31374774
stop:31382650
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g182900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G57530.1AT calcium-dependent protein kinase 32 JGI N/AIEA
GO:0006468GO-bp protein phosphorylation EnsemblGenomesN/AIEA
GO:0006468GO-bp protein phosphorylation JGI N/AIEA
GO:0009103GO-bp lipopolysaccharide biosynthetic process JGI N/AIEA
GO:0009738GO-bp abscisic acid-activated signaling pathway EnsemblGenomesN/AIEA
GO:0018105GO-bp peptidyl-serine phosphorylation EnsemblGenomesN/AIEA
GO:0035556GO-bp intracellular signal transduction EnsemblGenomesN/AIEA
GO:0046777GO-bp protein autophosphorylation EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005886GO-cc plasma membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0004672GO-mf protein kinase activity EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity JGI N/AIEA
GO:0004683GO-mf calmodulin-dependent protein kinase activity EnsemblGenomesN/AIEA
GO:0005509GO-mf calcium ion binding EnsemblGenomesN/AIEA
GO:0005509GO-mf calcium ion binding JGI N/AIEA
GO:0005516GO-mf calmodulin binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0009931GO-mf calcium-dependent protein serine/threonine kinase activity EnsemblGenomesN/AIEA
GO:0016773GO-mf phosphotransferase activity, alcohol group as acceptor JGI N/AIEA
KOG0032 KOG Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily JGI N/AIEA
KOG0659 KOG Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 JGI N/AIEA
PTHR24349Panther SERINE/THREONINE-PROTEIN KINASE JGI N/AIEA
PTHR24349:SF13Panther JGI N/AIEA
PF00036PFAM EF hand JGI N/AIEA
PF00069PFAM Protein kinase domain JGI N/AIEA

Expression Patterns of Glyma.02g182900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g182900
ParalogEvidenceComments
Glyma.10g103100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g182900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g31490 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.02g182900
>Glyma.02g182900.2 sequence-type=transcript locus=Glyma.02g182900 ID=Glyma.02g182900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTCTACGGAGAGGAAATCCCATTTAATTTaaagagagagaaaaatacaaacacaaagaaagagcattagaaaaagaggattaaggaagaagaaggagaCGCCGGACCAAGCGTCCGTGTTTCATCTTTGGTCTCCTCTCCTTCCTCTTCCCCGTAATCCTCCCTTAAATCATCATCCCATATTCACAAATCACAATCATTAATTCTTAGATTAATTGCATTCGAGATCAGAAAAGAAAAAAAACACAAGAAGAAACGGAATCCCTATGAGGACGGGCGGGGGAAGAAGCTGGTGGTGCTGACGGAGCCCACGGGCCGGGACATCGGCCTGCGGTACGACCTGGGCCGGGAGCTGGGACGCGGCGAGTTCGGGGTGACGTACCTGTGCCGCGACAGGGAAACGAAGGAGGAATTAGCATGCAAGAGTATTTCCAAGAAGAAGCTACGAACGGCTATTGATATTGAAGACGTGAGGAGGGAGGTGGAGATCATGCGGCACCTGCCCAAACACCCGAACGTTGTGTCGTTGAAGGACACGTACGAGGACGACGATGCCGTTCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTCTTCGACCGTATCGTTGCGCGCGGCCACTACACCGAGCGCGCTGCCACCACTGTCACCAGAACCATCGTCGAAGTCGTGAAGGTGTGCCACGAGCATggtgtgatgcatcgtgatctcaaacccgagaactttttgtttggaaacaagaaggaaacagcacccttgaaagttattgactttggattgtcggttttATTCAAACCAGGTGAAAGATTCAATGAGATAGTTGGAAGCCCATATTACATGGCTCCTGAGGTATTAAAGCGTAATTATGGCCCTGAAATAGATATCTGGAGTGCTGGAGTAATTCTCTACATATTACTTTGTGGCGTTCCACCGTTTTGGGCAGAAACTGAACAGGGAGTTGCTCAAGCAATTATTCGATCTATTGTTGATTTTAAAAGGGAGCCATGGCCAAAGGTTTCTGATAATGCAAAAGACCTTGTGAAGAAGATGCTCGATCCTGACCCTAAGCGCCGGCTTACTGCACAAGAAGTGTTAGATCATCCATGGTTACAGAATGAAAAGAAAGCTCCTAATGTTTCATTAGGAGAAACTGTTAGATCAAGGCTCATGCAATTTTCTGTAATGAACAAGCTTAAGAAAAGAGCCTTGAGGGTGATTGCAGAGTATTTGTCCTTAGAAGAAGCTGCTGGAATAAAAGAGGGATTCCAGCTGATGGATACAAGCAATAAAGGCAAGATTAGCGTCGATGAGCTGCGTGTAGGGTTGCATAAACTAGGTCACCAAATTCCTGATGGGGATATCCAAATACTTATGGATGCTGGTGATGTAGACAACGATGGGTACATAGATTATGGCGAGTTTGTTGCCATTTCCATTCATCTGAGAAAGATAGACAATGATGAGCACCTTCACAAAGCCTTCCAATTTTTTGATGAGAACCAAAGTGGATATATTGAAATTGAGGAGTTACATAATGTCTTAGCTGATGAGATTGAAACAAACAGTGAAGAAGTCATCAATGCAATTATCCATGATGTGGACACAGATAAGGATGGAAGAATAAGTTATGAGGAATTTGCCGCGATGATGAAGGCAGGCACAGATTGGAGGAAAGCATCAAGGCAGTATTCAAGAGAGAGGTTCTCTAGCCTAAGTCAGAAATTGATCAAGGACGGGTCTTTGAAACTAAACAATGATGACGGTAGATGACTTTATTAGAAATATTGTTTTACTCGGGCAAAGCCAAAGGAGAAGAAGTCATCCTCATCCCTTTATTCTTTTCCCCTTCATTGTTATTCTTTTCTCTCTATTTTTTGTTATATCCTTTCGAGGGATTAATTAAATAGGATATATATAGGCCTGATAAGTAATGTCTGTGGCTTGCAGTATTCATTTTTTAAAGTTCTTTTGGTTTGTTGAGGGTGTTATTGGAGAAAGGAGAGGGTGGAGGATTGGACAAGTCTTCAATGTGTGACTGTAAATATTTTCAAATAGTCACACTTATATTATAATCATTTGGCATATTTAACG
Coding sequences of Glyma.02g182900
>Glyma.02g182900.1 sequence-type=CDS polypeptide=Glyma.02g182900.1.p locus=Glyma.02g182900 ID=Glyma.02g182900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTAACTGTTGCGTTTTGCCATCCCGTCAGATCAGAAAAGAAAAAAAACACAAGAAGAAACGGAATCCCTATGAGGACGGGCGGGGGAAGAAGCTGGTGGTGCTGACGGAGCCCACGGGCCGGGACATCGGCCTGCGGTACGACCTGGGCCGGGAGCTGGGACGCGGCGAGTTCGGGGTGACGTACCTGTGCCGCGACAGGGAAACGAAGGAGGAATTAGCATGCAAGAGTATTTCCAAGAAGAAGCTACGAACGGCTATTGATATTGAAGACGTGAGGAGGGAGGTGGAGATCATGCGGCACCTGCCCAAACACCCGAACGTTGTGTCGTTGAAGGACACGTACGAGGACGACGATGCCGTTCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTCTTCGACCGTATCGTTGCGCGCGGCCACTACACCGAGCGCGCTGCCACCACTGTCACCAGAACCATCGTCGAAGTCGTGAAGGTGTGCCACGAGCATGGTGTGATGCATCGTGATCTCAAACCCGAGAACTTTTTGTTTGGAAACAAGAAGGAAACAGCACCCTTGAAAGTTATTGACTTTGGATTGTCGGTTTTATTCAAACCAGGTGAAAGATTCAATGAGATAGTTGGAAGCCCATATTACATGGCTCCTGAGGTATTAAAGCGTAATTATGGCCCTGAAATAGATATCTGGAGTGCTGGAGTAATTCTCTACATATTACTTTGTGGCGTTCCACCGTTTTGGGCAGAAACTGAACAGGGAGTTGCTCAAGCAATTATTCGATCTATTGTTGATTTTAAAAGGGAGCCATGGCCAAAGGTTTCTGATAATGCAAAAGACCTTGTGAAGAAGATGCTCGATCCTGACCCTAAGCGCCGGCTTACTGCACAAGAAGTGTTAGATCATCCATGGTTACAGAATGAAAAGAAAGCTCCTAATGTTTCATTAGGAGAAACTGTTAGATCAAGGCTCATGCAATTTTCTGTAATGAACAAGCTTAAGAAAAGAGCCTTGAGGGTGATTGCAGAGTATTTGTCCTTAGAAGAAGCTGCTGGAATAAAAGAGGGATTCCAGCTGATGGATACAAGCAATAAAGGCAAGATTAGCGTCGATGAGCTGCGTGTAGGGTTGCATAAACTAGGTCACCAAATTCCTGATGGGGATATCCAAATACTTATGGATGCTGGTGATGTAGACAACGATGGGTACATAGATTATGGCGAGTTTGTTGCCATTTCCATTCATCTGAGAAAGATAGACAATGATGAGCACCTTCACAAAGCCTTCCAATTTTTTGATGAGAACCAAAGTGGATATATTGAAATTGAGGAGTTACATAATGTCTTAGCTGATGAGATTGAAACAAACAGTGAAGAAGTCATCAATGCAATTATCCATGATGTGGACACAGATAAGGATGGAAGAATAAGTTATGAGGAATTTGCCGCGATGATGAAGGCAGGCACAGATTGGAGGAAAGCATCAAGGCAGTATTCAAGAGAGAGGTTCTCTAGCCTAAGTCAGAAATTGATCAAGGACGGGTCTTTGAAACTAAACAATGATGACGGTAGATGA

>Glyma.02g182900.2 sequence-type=CDS polypeptide=Glyma.02g182900.2.p locus=Glyma.02g182900 ID=Glyma.02g182900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCGGCACCTGCCCAAACACCCGAACGTTGTGTCGTTGAAGGACACGTACGAGGACGACGATGCCGTTCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTCTTCGACCGTATCGTTGCGCGCGGCCACTACACCGAGCGCGCTGCCACCACTGTCACCAGAACCATCGTCGAAGTCGTGAAGGTGTGCCACGAGCATGGTGTGATGCATCGTGATCTCAAACCCGAGAACTTTTTGTTTGGAAACAAGAAGGAAACAGCACCCTTGAAAGTTATTGACTTTGGATTGTCGGTTTTATTCAAACCAGGTGAAAGATTCAATGAGATAGTTGGAAGCCCATATTACATGGCTCCTGAGGTATTAAAGCGTAATTATGGCCCTGAAATAGATATCTGGAGTGCTGGAGTAATTCTCTACATATTACTTTGTGGCGTTCCACCGTTTTGGGCAGAAACTGAACAGGGAGTTGCTCAAGCAATTATTCGATCTATTGTTGATTTTAAAAGGGAGCCATGGCCAAAGGTTTCTGATAATGCAAAAGACCTTGTGAAGAAGATGCTCGATCCTGACCCTAAGCGCCGGCTTACTGCACAAGAAGTGTTAGATCATCCATGGTTACAGAATGAAAAGAAAGCTCCTAATGTTTCATTAGGAGAAACTGTTAGATCAAGGCTCATGCAATTTTCTGTAATGAACAAGCTTAAGAAAAGAGCCTTGAGGGTGATTGCAGAGTATTTGTCCTTAGAAGAAGCTGCTGGAATAAAAGAGGGATTCCAGCTGATGGATACAAGCAATAAAGGCAAGATTAGCGTCGATGAGCTGCGTGTAGGGTTGCATAAACTAGGTCACCAAATTCCTGATGGGGATATCCAAATACTTATGGATGCTGGTGATGTAGACAACGATGGGTACATAGATTATGGCGAGTTTGTTGCCATTTCCATTCATCTGAGAAAGATAGACAATGATGAGCACCTTCACAAAGCCTTCCAATTTTTTGATGAGAACCAAAGTGGATATATTGAAATTGAGGAGTTACATAATGTCTTAGCTGATGAGATTGAAACAAACAGTGAAGAAGTCATCAATGCAATTATCCATGATGTGGACACAGATAAGGATGGAAGAATAAGTTATGAGGAATTTGCCGCGATGATGAAGGCAGGCACAGATTGGAGGAAAGCATCAAGGCAGTATTCAAGAGAGAGGTTCTCTAGCCTAAGTCAGAAATTGATCAAGGACGGGTCTTTGAAACTAAACAATGATGACGGTAGATGA
Predicted protein sequences of Glyma.02g182900
>Glyma.02g182900.1.p sequence-type=predicted peptide transcript=Glyma.02g182900.1 locus=Glyma.02g182900 ID=Glyma.02g182900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGNCCVLPSRQIRKEKKHKKKRNPYEDGRGKKLVVLTEPTGRDIGLRYDLGRELGRGEFGVTYLCRDRETKEELACKSISKKKLRTAIDIEDVRREVEIMRHLPKHPNVVSLKDTYEDDDAVHLVMELCEGGELFDRIVARGHYTERAATTVTRTIVEVVKVCHEHGVMHRDLKPENFLFGNKKETAPLKVIDFGLSVLFKPGERFNEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSIVDFKREPWPKVSDNAKDLVKKMLDPDPKRRLTAQEVLDHPWLQNEKKAPNVSLGETVRSRLMQFSVMNKLKKRALRVIAEYLSLEEAAGIKEGFQLMDTSNKGKISVDELRVGLHKLGHQIPDGDIQILMDAGDVDNDGYIDYGEFVAISIHLRKIDNDEHLHKAFQFFDENQSGYIEIEELHNVLADEIETNSEEVINAIIHDVDTDKDGRISYEEFAAMMKAGTDWRKASRQYSRERFSSLSQKLIKDGSLKLNNDDGR*

>Glyma.02g182900.2.p sequence-type=predicted peptide transcript=Glyma.02g182900.2 locus=Glyma.02g182900 ID=Glyma.02g182900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRHLPKHPNVVSLKDTYEDDDAVHLVMELCEGGELFDRIVARGHYTERAATTVTRTIVEVVKVCHEHGVMHRDLKPENFLFGNKKETAPLKVIDFGLSVLFKPGERFNEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSIVDFKREPWPKVSDNAKDLVKKMLDPDPKRRLTAQEVLDHPWLQNEKKAPNVSLGETVRSRLMQFSVMNKLKKRALRVIAEYLSLEEAAGIKEGFQLMDTSNKGKISVDELRVGLHKLGHQIPDGDIQILMDAGDVDNDGYIDYGEFVAISIHLRKIDNDEHLHKAFQFFDENQSGYIEIEELHNVLADEIETNSEEVINAIIHDVDTDKDGRISYEEFAAMMKAGTDWRKASRQYSRERFSSLSQKLIKDGSLKLNNDDGR*






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