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Report for Sequence Feature Glyma.02g181800

Feature Type:gene_model
Chromosome:Gm02
Start:31113439
stop:31120950
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g181800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G51340.2AT MATE efflux family protein JGI N/AIEA
GO:0006855GO-bp drug transmembrane transport EnsemblGenomesN/AIEA
GO:0006855GO-bp drug transmembrane transport JGI N/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0015238GO-mf drug transmembrane transporter activity EnsemblGenomesN/AIEA
GO:0015238GO-mf drug transmembrane transporter activity JGI N/AIEA
GO:0015297GO-mf antiporter activity EnsemblGenomesN/AIEA
GO:0015297GO-mf antiporter activity JGI N/AIEA
KOG1347 KOG Uncharacterized membrane protein, predicted efflux pump JGI N/AIEA
PTHR11206Panther MULTIDRUG RESISTANCE PROTEIN JGI N/AIEA
PTHR11206:SF3Panther JGI N/AIEA
PF01554PFAM MatE JGI N/AIEA

Proteins Associated with Glyma.02g181800
LocusGene SymbolProtein Name
MATE13 citrate-proton symporter

Expression Patterns of Glyma.02g181800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g181800 not represented in the dataset
Glyma.02g181800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.02g181800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g31370 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g181800
>Glyma.02g181800.1 sequence-type=CDS polypeptide=Glyma.02g181800.1.p locus=Glyma.02g181800 ID=Glyma.02g181800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGCCCCTTTTGATGTTATTTTCTGGCATAAGGAATGCTTTCTCAAGTGATGAATTAGGCTTGGAAATACTGAATATTGCACTCCCTACTACTCTGGCTTTGGCAGCAGATCCTATTGCTTCTCTAATTGATACTGCATTCATTGGCCACATAGGTCCTGTAGAGCTAGCTGCTGTGGGAGTCTCAATTGCTATTTTCAATCAAATCTCAAAAATTACAATAATTCCACTAGTCAGTGTCACAACCTCTTTGGTTGCCGAGGAAGATGCTGCTGATGAACAAAATCAACAGTCAGAAAAAGAAATGCTGATGAAGGTCTCTAATGAGGATGTAAAATTGGATGTACATGACCATATAGAGAAAGCTGGTAACCCTTCATCAGCAAATGTTGGTAGAGTAGCTAAACTTAAACATGACAAAAGCTATATTCCATCAGCATCATCAGGAGTAGTTATCGGTGGTGTGCTTGGGGTCCTACAAGCTCTCTTTCTCATTTTTACAGCTAAACCAATGTTGAGTTACATGGGCGTTGATTCGAATTCTCCTATGTTTAAACCAGCACAACAATACTTGACATTGAGGTCATTTGGTGCACCAGCAGTTATTATTTCTATGGCAATTCAAGGAGTTTTTCGTGGAATCAAAGATACAAAAACTCCTTTATATGCTACAGTAATGGGAGATGTAACAAATATTATTTTAGATCCGTTACTTATGTTCGTACTGCGTTTGGGAGTCAATGGGGCAGCCATTTCCCACATTATCTCCCAGTACTTGATTTCCATAATGCTACTGTGGAGTTTAATGCAACAAGTTGTTCTTATTCCTCCAAGTATCCAAGACTTTCAATTTGGGAAGATTCTTAAAAATGGGTTTCTATTATTGATTAAAGTTGCATCTGTGACTTTCTGTGTGACCTTGTCAGCATCCCTAGCAGCAAGGAAAGGATCAACAACAATGGCTGCATTTCAAATCTGCTTACAGATTTGGATGGCAACCTCTTTGCTTGCTGATGGATTGGCTGTTGCGGGACAAGCTATTATTGCAAGTGCATTTGCGAGAAATGATTACAAAAGGGTTATCGCATCTGCCTCACGTGTGCTGCAGCTTGGCTTGATTCTTGGGCTGGTGCTCTCTGTCCTTCTTTTAAGTCTACTACCATTTGCTTCTAGGTTATTTACTAATGACAACAATGTTCTGCAACTTATCAGTATTGGCATTCCATATGTTGCTGCCACTCAACCCATCAATGCCCTGGCATTTGTTTTCGATGGAGTCAACTATGGAGCTTCAGATTTCACATATTCTGCATACTCAATGATTATGGTAGCATTGGTGAGCATATTGAGTTTATATACGCTGTCCTCAAGCCTTGGCTTTACCGGTATCTGGATTGCGTTGTCGATTTACATGACTCTAAGGATATTTGCAGGCTTTTGGAGGATTGGTACTGGATCAGGGCCTTGGAGCTTCCTTAAGGTAAACAATGTTGGGCTTTAG
Predicted protein sequences of Glyma.02g181800
>Glyma.02g181800.1.p sequence-type=predicted peptide transcript=Glyma.02g181800.1 locus=Glyma.02g181800 ID=Glyma.02g181800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMPLLMLFSGIRNAFSSDELGLEILNIALPTTLALAADPIASLIDTAFIGHIGPVELAAVGVSIAIFNQISKITIIPLVSVTTSLVAEEDAADEQNQQSEKEMLMKVSNEDVKLDVHDHIEKAGNPSSANVGRVAKLKHDKSYIPSASSGVVIGGVLGVLQALFLIFTAKPMLSYMGVDSNSPMFKPAQQYLTLRSFGAPAVIISMAIQGVFRGIKDTKTPLYATVMGDVTNIILDPLLMFVLRLGVNGAAISHIISQYLISIMLLWSLMQQVVLIPPSIQDFQFGKILKNGFLLLIKVASVTFCVTLSASLAARKGSTTMAAFQICLQIWMATSLLADGLAVAGQAIIASAFARNDYKRVIASASRVLQLGLILGLVLSVLLLSLLPFASRLFTNDNNVLQLISIGIPYVAATQPINALAFVFDGVNYGASDFTYSAYSMIMVALVSILSLYTLSSSLGFTGIWIALSIYMTLRIFAGFWRIGTGSGPWSFLKVNNVGL*






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