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Report for Sequence Feature Glyma.02g173300

Feature Type:gene_model
Chromosome:Gm02
Start:27573506
stop:27583757
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g173300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G32050.1AT neurochondrin family protein JGI N/AIEA
KOG2611 KOG Neurochondrin/leucine-rich protein (Neurochondrin) JGI N/AIEA
PTHR13109Panther NEUROCHONDRIN JGI N/AIEA
PTHR13109:SF1Panther JGI N/AIEA
PF05536PFAM Neurochondrin JGI N/AIEA

Expression Patterns of Glyma.02g173300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.02g173300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g29250 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g173300
>Glyma.02g173300.1 sequence-type=CDS polypeptide=Glyma.02g173300.1.p locus=Glyma.02g173300 ID=Glyma.02g173300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTCCAGCGAATCTGGAGGAGGAGTGCTTGAAACTTCTGAAAGGAGAGCGAGACGAACAGCGTCTGGCTGGGCTTCTTCTGGTAACCAAGTTCTGCAAAGCTGAGGATCAGTCCTCAGTCCGTAGGGTCTACGATGCGGTTGGACCTCACTTTCTCTATCGCCTCCTCAGAACCGGTATGGCAAGCGGAGGAGGAGGCCTCAACGATAACCGGAATGCCTACTTAAGCTTATCCATCACGGTTCTCGCCACATTTTGTCGTGTTCCAGATATTGCTTCCTCGGAGGACATGCTTTTCTATATCCCCCTTGTCTTGGAAGTAATATCCACCGGGTCTGTCTTATCTGTTCTTGAAGAATGCTATGAGTTTCTATACTTGGTGTCAGCTGCTTCTGAAAGTGGAATCGCGAGATTTTTCGAATCCGGAGGCATCAAGATACTAGCTTCTCAAATGCGTTCTCTTCACGATGGTTCACATCTGATGGAATTATCTTTTAAACTTTTGCAATTGATTCTGGGTAGGACGTCCTCGGACATAATTCAGAATAATGACTTATCTGAAATCTCAGTTATTGTGGCAGCAATAGCAAGGCAGTTTGCTGTCTTGCACAATTCCTTGAAATTTGAAGCTCTCCACCTACTAAATGCCATTCTTTCCTCAAAAGATTCATCACAACTTCGTGATGCCTTCCGATTACTTCCTCAAGATAGCTGGTCACCCAATATACGCATTGGTATAATGGCTATTTTGCAGAATCGTGTTGCACCTGCTGAAAGGTTGCAGGCTCTCATTTTAGCCGAGTCTATGGTTTCCATGTATGGAGAAGATTGGTTGATTGGCCAAGTAAGCACAAATGATGCACTAGATCCAGCTCCAGCTGACATGTGCTTGTTGCTTGTCTTGGAGCAGTCAAGGGTTGAAATTGCTGTTCTTCTGAATGAGTTGGCGTACTTAAAATATGAAGCACCTCAGGATACTTCTGCCACAGCTGAAGCAATTTTTTCAAAGCGACATAATGTGGCTGTTGCTTACTCCTTGGTTGAGAGGATAATAAAATTAATATCAAATGTTGAAGGAAATGATGGAAACCTCCTTGATGAAGGCACATTGACAAAGCTGATTCACCAACTGAATGAGACAATTGCTGTTGTACTAGAGTATTTAGAAGATGCAAAGGAACATGGGCAAAAGAAAGGAGATGATTTACTTGCTTCAGTGCGAATTATTGGGAGCTATCTTGCAGAAGCACCTGTAGCATGCAAGGAGAAGGTTCAAGATCTTTTAGGGTATATGCTTTCTCTTGAAGGTGAAGATGAACAAAGGCCCTTCTACGCTGTTTGCTTTCTGCTACCTATGTTGTCTCAAATTACTATGGAGATTGAAGGATGCAAAGCTTTGGCTTCATGTAAAGGACTTGAGGCTGTTTTAGATTGCTTCAGTAAATTAGTTGGGTCACATGCTTTTCTGGTTGAGGATAATGGTTGCATCTTTATGGCATGTGATACAATAATGAATCTTTTATTAAAGAAAGACAAAGTTCAGATAAAGTTGGATGTATCAGCTATTGTTGATCTTCTTAAAGTGTTGGCTCATTGGTCAGAAAACACTGATGAAATGTCAAGTATGATGATGGCTTCAAGCATTTGTACACTGATATTTGATTATACATCAGAAGAGGCTCTTTTAAACTGTCCAGATTTCGACTATAGAACTCTTAGCAGTCTTTATCTTCTCATTGCAAGATGTCTGGCATCATCAGAACAGGATACTAAAGTGGATATGGATCTTTCTGAGATTGTCTCTTCTGGCTTCTCTCGATGGGCTCATCGGTACCCCCACATCAGAGACGCTGTCAAGAACTAA
Predicted protein sequences of Glyma.02g173300
>Glyma.02g173300.1.p sequence-type=predicted peptide transcript=Glyma.02g173300.1 locus=Glyma.02g173300 ID=Glyma.02g173300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSPANLEEECLKLLKGERDEQRLAGLLLVTKFCKAEDQSSVRRVYDAVGPHFLYRLLRTGMASGGGGLNDNRNAYLSLSITVLATFCRVPDIASSEDMLFYIPLVLEVISTGSVLSVLEECYEFLYLVSAASESGIARFFESGGIKILASQMRSLHDGSHLMELSFKLLQLILGRTSSDIIQNNDLSEISVIVAAIARQFAVLHNSLKFEALHLLNAILSSKDSSQLRDAFRLLPQDSWSPNIRIGIMAILQNRVAPAERLQALILAESMVSMYGEDWLIGQVSTNDALDPAPADMCLLLVLEQSRVEIAVLLNELAYLKYEAPQDTSATAEAIFSKRHNVAVAYSLVERIIKLISNVEGNDGNLLDEGTLTKLIHQLNETIAVVLEYLEDAKEHGQKKGDDLLASVRIIGSYLAEAPVACKEKVQDLLGYMLSLEGEDEQRPFYAVCFLLPMLSQITMEIEGCKALASCKGLEAVLDCFSKLVGSHAFLVEDNGCIFMACDTIMNLLLKKDKVQIKLDVSAIVDLLKVLAHWSENTDEMSSMMMASSICTLIFDYTSEEALLNCPDFDYRTLSSLYLLIARCLASSEQDTKVDMDLSEIVSSGFSRWAHRYPHIRDAVKN*






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