Glyma.02g173000

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Report for Sequence Feature Glyma.02g173000

Feature Type:	gene_model
Chromosome:	Gm02
Start:	27521794
stop:	27524920
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.02g173000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G04600.1	AT	RNA-binding (RRM/RBD/RNP motifs) family protein	JGI	N/A	IEA
GO:0003676	GO-mf	nucleic acid binding	EnsemblGenomes	N/A	IEA
GO:0003676	GO-mf	nucleic acid binding	JGI	N/A	IEA
GO:0003723	GO-mf	RNA binding	EnsemblGenomes	N/A	IEA
KOG4208	KOG	Nucleolar RNA-binding protein NIFK	JGI	N/A	IEA
PTHR23365	Panther	POLY-A BINDING PROTEIN 2	JGI	N/A	IEA
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI	N/A	IEA

Expression Patterns of Glyma.02g173000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.02g173000

Paralog	Evidence	Comments
Glyma.09g111400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g173000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma02g29190	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.02g173000

Limit To All Plant Sequences

>Glyma.02g173000.2 sequence-type=transcript locus=Glyma.02g173000 ID=Glyma.02g173000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCAACCTTCAACTCACCGCCGCATAGCGAAGCAACACAATTTTGCAGTTATATATCGCAAAGCCGTTTCTTTTTCACGATAATCTAATTTGTTTCTGTAACGTTTTAGGGTTCGCATAGTGAGATGGGGAAGAAGGCGAAGAAAGCTATGAATAATTTGAAAAGGGCTTCCTTTAATAATAAGCCATCTGAGGGTGCTGATTTCTTGCCCTTGGAAGGTGGTCCTGCTCGTAAGCTCGCCGCCTCCCAGCAGAAGCCGCCGGAGAACACCGCCACGGTTTTGTATGTCGGTCGGATTCCGCATGGATTCTATGAGAAGGAGATGGAAGGTTATTTTGGGCAATTTGGAACCATCAAGAGGTTGAGAATCGCAAGGAATAAAAAGTCTGGAAAATCAAGACATTTTGGTTTCATAGAATTTGAATCTCCTGAGGTAGCAAAAATTGTGGCTGATACTATGCATAATTATCTCCTTTTTGAACACCTTCTCCAAGTTTATGTAATACCTCCAGAGCATGTTCATCCAAGAATATGGAGAGGATTCAATTACCATTACAAGCCATTGGATTCAGTCCAAATTGAACGGAAGCGTCATGACAAGGAAAGAACATTGAAAGAGCACCAGAAGTTGGTGGATAAGGTTCTGAAACATGACCAAAAACGACGTAAAAGGATAGAGGCTGCTGGCATTGATTATGAATGCCCTGAGATTGTGGGCAACATCCAACCTGCACCAAAGAAAATAAAGTTTGAAGACTGAGGGGTTTGACCACATTGAGCTCATTGAGTATACCTTGAAATTATATTGTGATGAGAGCCATGTTGAGAACTATCCGGCACTGAAGAAGTGAAATGGTTATTGTTTGAGGAAAAAACAAAATACACGTGAGAAGTGAAATGGTTATTGTTTGAGGAAAAAACAAAATACACGTGAGAAGTAAAATGGTTATTATTCAAGGGAAAGTTGAGTTTGTTTTGTATTTTTTGACCATCAGAATATAGACTCGGACGCTGGTTGACGTGGGAGAGTGGATTAGTTCTCCCATGGGAGTTATTTTGTCCCATTGAATATATTCATATTTAGTTTAATGGTCAAGATtttttctctttctttttc

Coding sequences of Glyma.02g173000

Limit To All Plant Sequences

>Glyma.02g173000.1 sequence-type=CDS polypeptide=Glyma.02g173000.1.p locus=Glyma.02g173000 ID=Glyma.02g173000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGAAGAAGGCGAAGAAAGCTATGAATAATTTGAAAAGGGCTTCCTTTAATAATAAGCCATCTGAGGGTGCTGATTTCTTGCCCTTGGAAGGTGGTCCTGCTCGTAAGCTCGCCGCCTCCCAGCAGAAGCCGCCGGAGAACACCGCCACGGTTTTGTATGTCGGTCGGATTCCGCATGGATTCTATGAGAAGGAGATGGAAGGTTATTTTGGGCAATTTGGAACCATCAAGAGGTTGAGAATCGCAAGGAATAAAAAGTCTGGAAAATCAAGACATTTTGGTTTCATAGAATTTGAATCTCCTGAGGTAGCAAAAATTGTGGCTGATACTATGCATAATTATCTCCTTTTTGAACACCTTCTCCAAGTTTATGTAATACCTCCAGAGCATGTTCATCCAAGAATATGGAGAGGATTCAATTACCATTACAAGCCATTGGATTCAGTCCAAATTGAACGGAAGCGTCATGACAAGGAAAGAACATTGAAAGAGCACCAGAAGTTGGTGGATAAGGTTCTGAAACATGACCAAAAACGACGTAAAAGGATAGAGGCTGCTGGCATTGATTATGAATGCCCTGAGATTGTGGGCAACATCCAACCTGCACCAAAGAAAATAAAGTTTGAAGACTGA

>Glyma.02g173000.2 sequence-type=CDS polypeptide=Glyma.02g173000.2.p locus=Glyma.02g173000 ID=Glyma.02g173000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGAAGAAGGCGAAGAAAGCTATGAATAATTTGAAAAGGGCTTCCTTTAATAATAAGCCATCTGAGGGTGCTGATTTCTTGCCCTTGGAAGGTGGTCCTGCTCGTAAGCTCGCCGCCTCCCAGCAGAAGCCGCCGGAGAACACCGCCACGGTTTTGTATGTCGGTCGGATTCCGCATGGATTCTATGAGAAGGAGATGGAAGGTTATTTTGGGCAATTTGGAACCATCAAGAGGTTGAGAATCGCAAGGAATAAAAAGTCTGGAAAATCAAGACATTTTGGTTTCATAGAATTTGAATCTCCTGAGGTAGCAAAAATTGTGGCTGATACTATGCATAATTATCTCCTTTTTGAACACCTTCTCCAAGTTTATGTAATACCTCCAGAGCATGTTCATCCAAGAATATGGAGAGGATTCAATTACCATTACAAGCCATTGGATTCAGTCCAAATTGAACGGAAGCGTCATGACAAGGAAAGAACATTGAAAGAGCACCAGAAGTTGGTGGATAAGGTTCTGAAACATGACCAAAAACGACGTAAAAGGATAGAGGCTGCTGGCATTGATTATGAATGCCCTGAGATTGTGGGCAACATCCAACCTGCACCAAAGAAAATAAAGTTTGAAGACTGA

Predicted protein sequences of Glyma.02g173000

Limit To All Plant Sequences

>Glyma.02g173000.1.p sequence-type=predicted peptide transcript=Glyma.02g173000.1 locus=Glyma.02g173000 ID=Glyma.02g173000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGKKAKKAMNNLKRASFNNKPSEGADFLPLEGGPARKLAASQQKPPENTATVLYVGRIPHGFYEKEMEGYFGQFGTIKRLRIARNKKSGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHLLQVYVIPPEHVHPRIWRGFNYHYKPLDSVQIERKRHDKERTLKEHQKLVDKVLKHDQKRRKRIEAAGIDYECPEIVGNIQPAPKKIKFED*

>Glyma.02g173000.2.p sequence-type=predicted peptide transcript=Glyma.02g173000.2 locus=Glyma.02g173000 ID=Glyma.02g173000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGKKAKKAMNNLKRASFNNKPSEGADFLPLEGGPARKLAASQQKPPENTATVLYVGRIPHGFYEKEMEGYFGQFGTIKRLRIARNKKSGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHLLQVYVIPPEHVHPRIWRGFNYHYKPLDSVQIERKRHDKERTLKEHQKLVDKVLKHDQKRRKRIEAAGIDYECPEIVGNIQPAPKKIKFED*

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