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Report for Sequence Feature Glyma.02g170600

Feature Type:gene_model
Chromosome:Gm02
Start:26652157
stop:26657142
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g170600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G09660.1AT minichromosome maintenance 8 JGI N/AIEA
GO:0006260GO-bp DNA replication JGI N/AIEA
GO:0006270GO-bp DNA replication initiation EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0015979GO-bp photosynthesis JGI N/AIEA
GO:0015995GO-bp chlorophyll biosynthetic process JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0008134GO-mf transcription factor binding JGI N/AIEA
GO:0016851GO-mf magnesium chelatase activity JGI N/AIEA
GO:0016887GO-mf ATPase activity JGI N/AIEA
PTHR11630Panther DNA REPLICATION LICENSING FACTOR JGI N/AIEA
PTHR11630:SF47Panther DNA HELICASE MCM8 JGI N/AIEA
PF00493PFAM MCM2/3/5 family JGI N/AIEA

Expression Patterns of Glyma.02g170600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g170600 not represented in the dataset
Glyma.02g170600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.02g170600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g28577 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.02g170600
>Glyma.02g170600.2 sequence-type=transcript locus=Glyma.02g170600 ID=Glyma.02g170600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACTATTGTCTCGCACTCTCCAACACTCTCCAAGACCAAACCCTAGAGCCCTCTTTCTCCCTTCCTCTGTCTTCATCGTTCCCACCCTTCCTTCTCTTTCTCATCTCTCAACACAATCAACGTGGACCTCTAACTATCATTTAATTTCATAACTTTTTTATTTTTTTCAGATTAGGATGGAGCCAATTGCAGTGGATTCCAGTGAGATTCCAGAAGTGTGTAGGAAAAAGGATGGAGTGGGATAAGGAGGTGGTTCATGTGGCACGTGTGTTGTATGGTTTACTCAATGAGGGGCTGGGATTGGTTGCGGAGAGGCTCACGAAGATGGGTCTGGTGGAAGGAAGAGTTATGGTGGGGCACTATTATTTTGACAGCTGGGATAACCCTTGCATTATTTGGTGGTGTACGAAAGCATCCTATGGATCAGAATAATGTTCCTGTCAGGGGAGATATTCATGTCATAATTGTTGGTAATCCTGGTCTAGGTAAGAGCCAGTTGCTACAAGCAGCAGCTGCTGTCTCTCCACGTGGTATCTTTGTCTTTGGTAATGCCACAACCAAAGATGGCCTCACAGTAGCTGTAGTGAAGGATTCCATGACAAGTGACTATGCTTTTGAGGCCGGTGCTATGGTGCTGGCTGACAGTGGATTGTGTTGTATTGATGAGTTAGATAAAATGTCAATAGAGCATCAGGATTTGCTTAAGGCGATGGAGCAACAGCGTGTTTCTATTGCAAAGGCAGGATTAGTAGCAAGTTTATCATCCAGGACTTTTGTCTTAGCAGCTGCAAACCCCGCTTGTGGTCACTATAAGTAATTTTCTATTTTTTTATTGTTCCCACAATTTCCCTTTAATGGGTCATTCATATTTTGATATTTTGTCAGATTTATCATGATAAAataatatataaacactaataaatcatataaagttcactaatatccaatacatTTCCATTCTCTCTTTAAACGATGTAGACGTTACTAAAAACAAATCAAGCCTAACTCAGTTGAAAAAGCTAGTTAAGGAAGAAAACATGGAACATTTTTATACATCTACCTTATGCTTAGGATTAGATATATAATTTTCATTTATATATCTTGCAGACAAATGATGTTCAAGCTCCACTTTTTCCATTAATTGCAAGGTGTAAGCGGAATGTAGAATATAGGTATAATAAAATAATGAGAATGCCAACTACTAGTAGTACTTAATTAGAACAAAAGTATCAAAATTAAAACGAAAATAACTTTGATGTTGTTAGTATATGAGTTTAATTTTGATACAGTGTAAAAATTTAAATTTTTAATTAATTAGAAACTAATGATTTGTGAAACAATTACTGCAAAAGGTATAGGAGAATATATATAATTAATTGCAAATGTTAGTGTATTTAAATTAGATTCTTAATTAACATATTCATATTGTTATTTTTTGTATCTTTTTTATTTATTGAGACAGTGGAATGATATGATACCGCACTATATTTATTGAGACAGTGAAATCACCTAAGTATTGAGATTCTTTAATTTGTATAAATTGTATTCTATTATTTGCTATCAAAATAAAGCCAGTCATGTAACATAGCAGTGTTTCTTTGACAAATTCTGCAAGTTATTTGTAAAaatctctaattaattaatatggacaacatattatattataacatttatattagttatttacatttaaatgggtttaatataaagtgatctatttaagcgagctcattagactgtcagaaaattaatatgggcttaatgagcgaaaaccaatttgacccattagaggataatgaaaaccctaataggtttaaaacctaaggaatggttatggtccccaatacaccaaaatcaataaacagtttttcctctccccatctgaagagaaaacgaaggtcccataaggaagaaggtgatttggttgaggaaggtcattaaaccaattgtttgtgaccattgtcaaattccgttgcgtgttgatcaaactctctatggatccagttaatattaccagtgctgcaaatgttactgccaaagtgaattctatcccaatgctgaatgggacaaattttaaggtctggaaggaagccgtagaaattgttcttggctgtatggatttggacttggcattgaggacagaacgacccatttccactccggaaacctctaatgaggtaaaaaattgagaagtgggatcggtccaaccgaatgtgccttatgatcatgaagcgctatattccagaggcgttttggggctctatttctgagggtcaaagtgcaaagaaattccttgaggaaattgagcaatactttgccagaaattaagaggtggagacgagtaaccttttggctaaactcatctccatgaagtataaaggtaaaggaaacataagggagtacattatagagatgtccaatctcgcatcaaaactcaagtcacttaagttagagcttggtgaagacctgctcatgtacttggttttgatatcacttcctgcacactttgggcaattcaaagtgagctataacacttagaaggacaaatggtccctcaatgagcttatatctcattgtgtgcaagaggaggagagcctgtagagagatagaactgaaagtgctcacttgatttcgacctctcagaataagaaatggaagaagactaagggtgctgcgtaagggacttcttagcaaaagaaacaaaataaggatgaggaatttgcttgttacttctacaagaaatcgggacacatgaagaaagagtgtctcaagtatgccgcatggcatgtgaagaaagggttgcctgtggagccgactaccaagtgatgatgaaagattcatctttttgggtgatggcaagaaggttgcagtggaagctattggaacttttagattatagttaaaaactggattttatttggatttatttgagacttttgttgtaccatcttttagacggaatttgatttgtatttctagtttggacaaatttggattttcttgttcatttgaaaataataaagttagtctctaccacaattcaaatatggctagttctagttctttaattgataatctttacatgcatgatgttgttagttcctataatgaaatactg

>Glyma.02g170600.3 sequence-type=transcript locus=Glyma.02g170600 ID=Glyma.02g170600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACTATTGTCTCGCACTCTCCAACACTCTCCAAGACCAAACCCTAGAGCCCTCTTTCTCCCTTCCTCTGTCTTCATCGTTCCCACCCTTCCTTCTCTTTCTCATCTCTCAACACAATCAACGTGGACCTCTAACTATCATTTAATTTCATAACTTTTTTATTTTTTTCAGATTAGGATGGAGCCAATTGCAGTGGATTCCAGTGAGATTCCAGAAGTGTGTAGGAAAAAGGATGGAGTGGGATAAGGAGGTGGTTCATGTGGCACGTGTGTTGTATGGTTTACTCAATGAGGGGCTGGGATTGGTTGCGGAGAGGCTCACGAAGATGGGTCTGGTGGAAGGAAGAGTTATGGTGGGGCACTATTATTTTGACAGCTGGGATAACCCTTGCATTATTTGGTGGTGTACGAAAGCATCCTATGGATCAGAATAATGTTCCTGTCAGGGGAGATATTCATGTCATAATTGTTGGTAAGAGCCAGTTGCTACAAGCAGCAGCTGCTGTCTCTCCACGTGGTATCTTTGTCTTTGGTAATGCCACAACCAAAGATGGCCTCACAGTAGCTGTAGTGAAGGATTCCATGACAAGTGACTATGCTTTTGAGGCCGGTGCTATGGTGCTGGCTGACAGTGGATTGTGTTGTATTGATGAGTTAGATAAAATGTCAATAGAGCATCAGGATTTGCTTAAGGCGATGGAGCAACAGCGTGTTTCTATTGCAAAGGCAGGATTAGTAGCAAGTTTATCATCCAGGACTTTTGTCTTAGCAGCTGCAAACCCCGCTTGTGGTCACTATAAagaaaacgaaggtcccataaggaagaaggtgatttggttgaggaaggtcattaaaccaattgtttgtgaccattgtcaaattccgttgcgtgttgatcaaactctctatggatccagttaatattaccagtgctgcaaatgttactgccaaagtgaattctatcccaatgctgaatgggacaaattttaaggtctggaaggaagccgtagaaattgttcttggctgtatggatttggacttggcattgaggacagaacgacccatttccactccggaaacctctaatgaggtaaaaaattgagaagtgggatcggtccaaccgaatgtgccttatgatcatgaagcgctatattccagaggcgttttggggctctatttctgagggtcaaagtgcaaagaaattccttgaggaaattgagcaatactttgccagaaattaagaggtggagacgagtaaccttttggctaaactcatctccatgaagtataaaggtaaaggaaacataagggagtacattatagagatgtccaatctcgcatcaaaactcaagtcacttaagttagagcttggtgaagacctgctcatgtacttggttttgatatcacttcctgcacactttgggcaattcaaagtgagctataacacttagaaggacaaatggtccctcaatgagcttatatctcattgtgtgcaagaggaggagagcctgtagagagatagaactgaaagtgctcacttgatttcgacctctcagaataagaaatggaagaagactaagggtgctgcgtaagggacttcttagcaaaagaaacaaaataaggatgaggaatttgcttgttacttctacaagaaatcgggacacatgaagaaagagtgtctcaagtatgccgcatggcatgtgaagaaagggttgcctgtggagccgactaccaagtgatgatgaaagattcatctttttgggtgatggcaagaaggttgcagtggaagctattggaacttttagattatagttaaaaactggattttatttggatttatttgagacttttgttgtaccatcttttagacggaatttgatttgtatttctagtt
Coding sequences of Glyma.02g170600
>Glyma.02g170600.1 sequence-type=CDS polypeptide=Glyma.02g170600.1.p locus=Glyma.02g170600 ID=Glyma.02g170600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGCACGTGTGTTGTATGGTTTACTCAATGAGGGGCTGGGATTGGTTGCGGAGAGGCTCACGAAGATGGGTCTGGTGGAAGGAAGAGTTATGGTGGGGCACTATTATTTTGACAGCTGGGATAACCCTTGCATTATTTGGTGGTGTACGAAAGCATCCTATGGATCAGAATAATGTTCCTGTCAGGGGAGATATTCATGTCATAATTGTTGGTAATCCTGGTCTAGGTAAGAGCCAGTTGCTACAAGCAGCAGCTGCTGTCTCTCCACGTGGTATCTTTGTCTTTGGTAATGCCACAACCAAAGATGGCCTCACAGTAGCTGTAGTGAAGGATTCCATGACAAGTGACTATGCTTTTGAGGCCGGTGCTATGGTGCTGGCTGACAGTGGATTGTGTTGTATTGATGAGTTAGATAAAATGTCAATAGAGCATCAGGATTTGCTTAAGGCGATGGAGCAACAGCGTGTTTCTATTGCAAAGGCAGGATTAGTAGCAAGTTTATCATCCAGGACTTTTGTCTTAGCAGCTGCAAACCCCGCTTGTGGTCACTATAAAGAAAACGAAGGTCCCATAAGGAAGAAGGTGATTTGGTTGAGGAAGGTCATTAAACCAATTGTTTGTGACCATTGTCAAATTCCGTTGCGTGTTGATCAAACTCTCTATGGATCCAGTTAA

>Glyma.02g170600.2 sequence-type=CDS polypeptide=Glyma.02g170600.2.p locus=Glyma.02g170600 ID=Glyma.02g170600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGCACGTGTGTTGTATGGTTTACTCAATGAGGGGCTGGGATTGGTTGCGGAGAGGCTCACGAAGATGGGTCTGGTGGAAGGAAGAGTTATGGTGGGGCACTATTATTTTGACAGCTGGGATAACCCTTGCATTATTTGGTGGTGTACGAAAGCATCCTATGGATCAGAATAATGTTCCTGTCAGGGGAGATATTCATGTCATAATTGTTGGTAATCCTGGTCTAGGTAAGAGCCAGTTGCTACAAGCAGCAGCTGCTGTCTCTCCACGTGGTATCTTTGTCTTTGGTAATGCCACAACCAAAGATGGCCTCACAGTAGCTGTAGTGAAGGATTCCATGACAAGTGACTATGCTTTTGAGGCCGGTGCTATGGTGCTGGCTGACAGTGGATTGTGTTGTATTGATGAGTTAGATAAAATGTCAATAGAGCATCAGGATTTGCTTAAGGCGATGGAGCAACAGCGTGTTTCTATTGCAAAGGCAGGATTAGTAGCAAGTTTATCATCCAGGACTTTTGTCTTAGCAGCTGCAAACCCCGCTTGTGGTCACTATAAGTAA

>Glyma.02g170600.3 sequence-type=CDS polypeptide=Glyma.02g170600.3.p locus=Glyma.02g170600 ID=Glyma.02g170600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGCACGTGTGTTGTATGGTTTACTCAATGAGGGGCTGGGATTGGTTGCGGAGAGGCTCACGAAGATGGGTCTGGTGGAAGGAAGAGTTATGGTGGGGCACTATTATTTTGACAGCTGGGATAACCCTTGCATTATTTGGTGGTGTACGAAAGCATCCTATGGATCAGAATAATGTTCCTGTCAGGGGAGATATTCATGTCATAATTGTTGGTAAGAGCCAGTTGCTACAAGCAGCAGCTGCTGTCTCTCCACGTGGTATCTTTGTCTTTGGTAATGCCACAACCAAAGATGGCCTCACAGTAGCTGTAGTGAAGGATTCCATGACAAGTGACTATGCTTTTGAGGCCGGTGCTATGGTGCTGGCTGACAGTGGATTGTGTTGTATTGATGAGTTAGATAAAATGTCAATAGAGCATCAGGATTTGCTTAAGGCGATGGAGCAACAGCGTGTTTCTATTGCAAAGGCAGGATTAGTAGCAAGTTTATCATCCAGGACTTTTGTCTTAGCAGCTGCAAACCCCGCTTGTGGTCACTATAAAGAAAACGAAGGTCCCATAAGGAAGAAGGTGATTTGGTTGAGGAAGGTCATTAAACCAATTGTTTGTGACCATTGTCAAATTCCGTTGCGTGTTGATCAAACTCTCTATGGATCCAGTTAA
Predicted protein sequences of Glyma.02g170600
>Glyma.02g170600.1.p sequence-type=predicted peptide transcript=Glyma.02g170600.1 locus=Glyma.02g170600 ID=Glyma.02g170600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWHVCCMVYSMRGWDWLRRGSRRWVWWKEELWWGTIILTAGITLALFGGVRKHPMDQNNVPVRGDIHVIIVGNPGLGKSQLLQAAAAVSPRGIFVFGNATTKDGLTVAVVKDSMTSDYAFEAGAMVLADSGLCCIDELDKMSIEHQDLLKAMEQQRVSIAKAGLVASLSSRTFVLAAANPACGHYKENEGPIRKKVIWLRKVIKPIVCDHCQIPLRVDQTLYGSS*

>Glyma.02g170600.2.p sequence-type=predicted peptide transcript=Glyma.02g170600.2 locus=Glyma.02g170600 ID=Glyma.02g170600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWHVCCMVYSMRGWDWLRRGSRRWVWWKEELWWGTIILTAGITLALFGGVRKHPMDQNNVPVRGDIHVIIVGNPGLGKSQLLQAAAAVSPRGIFVFGNATTKDGLTVAVVKDSMTSDYAFEAGAMVLADSGLCCIDELDKMSIEHQDLLKAMEQQRVSIAKAGLVASLSSRTFVLAAANPACGHYK*

>Glyma.02g170600.3.p sequence-type=predicted peptide transcript=Glyma.02g170600.3 locus=Glyma.02g170600 ID=Glyma.02g170600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWHVCCMVYSMRGWDWLRRGSRRWVWWKEELWWGTIILTAGITLALFGGVRKHPMDQNNVPVRGDIHVIIVGKSQLLQAAAAVSPRGIFVFGNATTKDGLTVAVVKDSMTSDYAFEAGAMVLADSGLCCIDELDKMSIEHQDLLKAMEQQRVSIAKAGLVASLSSRTFVLAAANPACGHYKENEGPIRKKVIWLRKVIKPIVCDHCQIPLRVDQTLYGSS*






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