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Report for Sequence Feature Glyma.02g168000

Feature Type:gene_model
Chromosome:Gm02
Start:25883694
stop:25891047
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g168000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G11945.1AT homogentisate prenyltransferase JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0004659GO-mf prenyltransferase activity JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016765GO-mf transferase activity, transferring alkyl or aryl (other than methyl) groups EnsemblGenomesN/AIEA
PTHR11048Panther PRENYLTRANSFERASES JGI N/AIEA
PTHR11048:SF1Panther HOMOGENTISATE PHYTYLTRANSFERASE 1, CHLOROPLASTIC JGI N/AIEA
PF01040PFAM UbiA prenyltransferase family JGI N/AIEA
PWY-1581SoyCyc9 plastoquinol-9 biosynthesis I Plant Metabolic Network ISS
PWY-5864SoyCyc9 superpathway of plastoquinol biosynthesis Plant Metabolic Network ISS
GN7V-63191SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Proteins Associated with Glyma.02g168000
LocusGene SymbolProtein Name
VTE2-2 homogentisate phytyltransferase VTE2-2

Expression Patterns of Glyma.02g168000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g168000
ParalogEvidenceComments
Glyma.09g103500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g168000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g26820 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.02g168000
>Glyma.02g168000.2 sequence-type=transcript locus=Glyma.02g168000 ID=Glyma.02g168000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTGGCCCCACAAGATTGCTACTGTGACTTCGGGAGCAAAGGCTCTACAATTTACACACATTTTTTTGCCTTGTGTTGTGTCTGAAAGTTGGAGTGTTTTCTCGTTTGCTGTGCTCAGCTCCTTATGGAGCTCTCACTCTCTCCAACTTCACATCGAGTTCCTTCCACAATTCCCACTTTGAATTCCGCTAAACTATCATCCACTAAGGCCACCAAGTCACAACAACCTTTGTTCTTAAGATTTTCCAAACACTTCAACTCAATTGGGTTGCACCATCACAGTCACAGATGCTGCTCAAATGCTGTTCCCGAGAGACCCCAGAGACCCAGTTCCATAAGGGCTTGCACTGGAGTTGGAGCTTCTGGATCTGATCGTCCATTAGCTGAAAGACTTTTAGATCTGAAAGATGCTTGTTGGAGATTTTTAAGGCCACATACTATACGTGGTACAGCACTAGGTTCATTGGTAAACAAACCTTATTTACCTATAGCTGCTGGAGATCTTTCTGTCCAATCTGCATGGTTCTTGGTTATATTTTTTGCAGCTGCTGGCCTGTCAATTGTGGGGTTGAACTTTGGGCCCTTCATTTTTTCTCTTTACACACTTGGCCTTTTCTTGGGTACCATCTATTCTGTTCCTCCATTTAGAATGAAACGCTTTCCTGTTGCAGCATTTCTTATAATTGCCACGGTTCGGGGTTTTCTCCTTAACTTTGGTGTGTACTATGCCACTAGAGCTGCCCTTGGGCTTGCATTTGAATGGAGCTCTCCTGTGGTTTTTATCACAACATTTGTAACATTTTTCGCACTGGTAATTGCTATAACAAAAGATCTTCCTGATGTTGAAGGAGATCGCAAGTATCAGATATCAACCTTTGCCACAAAATTAGGAGTTCGGAACATTGCTTTCCTTGGTTCTGGAATTTTGTTGGTGAACTATATTGTTTCTGTTTTGGCAGCAATTTATATGCCTCAGGCTTTCAGGCGTTGGTTACTCATACCGGCTCATACGATTTTTGCAATAAGCTTGATTTACCAGGCATGGATATTAGAACAAGCAAATTATACCAAGGATGCAATATCAGGATTCTATCGATTCATATGGAATCTGTTCTATGCTGAGTATGCAATATTTCCTTTCATATAGCAAGCCTTGCTACATTTTTCTTGGGAAAAGGTGCATACGTGCATAGTTAGAGAGATCTTCTTTGTTGTCTCAAGTATCAATTAGTAAACTAGCTATTTTTTTAATGAGTATTTTTGTATATAAATGTGTGATACTATTTGCTTTTACTTTGATGTAATGCCATTAACATATTTCATAATGTTACACGGACAATATTTTGCA
Coding sequences of Glyma.02g168000
>Glyma.02g168000.1 sequence-type=CDS polypeptide=Glyma.02g168000.1.p locus=Glyma.02g168000 ID=Glyma.02g168000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGCTCTCACTCTCTCCAACTTCACATCGAGTTCCTTCCACAATTCCCACTTTGAATTCCGCTAAACTATCATCCACTAAGGCCACCAAGTCACAACAACCTTTGTTCTTAAGATTTTCCAAACACTTCAACTCAATTGGGTTGCACCATCACAGTCACAGATGCTGCTCAAATGCTGTTCCCGAGAGACCCCAGAGACCCAGTTCCATAAGGGCTTGCACTGGAGTTGGAGCTTCTGGATCTGATCGTCCATTAGCTGAAAGACTTTTAGATCTGAAAGATGCTTGTTGGAGATTTTTAAGGCCACATACTATACGTGGTACAGCACTAGGTTCATTTGCTTTGGTGGCAAGAGCATTGATTGAGAACACCAATTTGATAAAGTGGTCTCTTTTTTTCAAAGCTTTCTGTGGTCTTTTTGCTCTGATTTGTGGGAATGGTTATATAGTTGGCATCAATCAAATCTATGACATTAGCATTGACAAGGTAAACAAACCTTATTTACCTATAGCTGCTGGAGATCTTTCTGTCCAATCTGCATGGTTCTTGGTTATATTTTTTGCAGCTGCTGGCCTGTCAATTGTGGGGTTGAACTTTGGGCCCTTCATTTTTTCTCTTTACACACTTGGCCTTTTCTTGGGTACCATCTATTCTGTTCCTCCATTTAGAATGAAACGCTTTCCTGTTGCAGCATTTCTTATAATTGCCACGGTTCGGGGTTTTCTCCTTAACTTTGGTGTGTACTATGCCACTAGAGCTGCCCTTGGGCTTGCATTTGAATGGAGCTCTCCTGTGGTTTTTATCACAACATTTGTAACATTTTTCGCACTGGTAATTGCTATAACAAAAGATCTTCCTGATGTTGAAGGAGATCGCAAGTATCAGATATCAACCTTTGCCACAAAATTAGGAGTTCGGAACATTGCTTTCCTTGGTTCTGGAATTTTGTTGGTGAACTATATTGTTTCTGTTTTGGCAGCAATTTATATGCCTCAGGCTTTCAGGCGTTGGTTACTCATACCGGCTCATACGATTTTTGCAATAAGCTTGATTTACCAGGCATGGATATTAGAACAAGCAAATTATACCAAGGATGCAATATCAGGATTCTATCGATTCATATGGAATCTGTTCTATGCTGAGTATGCAATATTTCCTTTCATATAG

>Glyma.02g168000.2 sequence-type=CDS polypeptide=Glyma.02g168000.2.p locus=Glyma.02g168000 ID=Glyma.02g168000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGCTCTCACTCTCTCCAACTTCACATCGAGTTCCTTCCACAATTCCCACTTTGAATTCCGCTAAACTATCATCCACTAAGGCCACCAAGTCACAACAACCTTTGTTCTTAAGATTTTCCAAACACTTCAACTCAATTGGGTTGCACCATCACAGTCACAGATGCTGCTCAAATGCTGTTCCCGAGAGACCCCAGAGACCCAGTTCCATAAGGGCTTGCACTGGAGTTGGAGCTTCTGGATCTGATCGTCCATTAGCTGAAAGACTTTTAGATCTGAAAGATGCTTGTTGGAGATTTTTAAGGCCACATACTATACGTGGTACAGCACTAGGTTCATTGGTAAACAAACCTTATTTACCTATAGCTGCTGGAGATCTTTCTGTCCAATCTGCATGGTTCTTGGTTATATTTTTTGCAGCTGCTGGCCTGTCAATTGTGGGGTTGAACTTTGGGCCCTTCATTTTTTCTCTTTACACACTTGGCCTTTTCTTGGGTACCATCTATTCTGTTCCTCCATTTAGAATGAAACGCTTTCCTGTTGCAGCATTTCTTATAATTGCCACGGTTCGGGGTTTTCTCCTTAACTTTGGTGTGTACTATGCCACTAGAGCTGCCCTTGGGCTTGCATTTGAATGGAGCTCTCCTGTGGTTTTTATCACAACATTTGTAACATTTTTCGCACTGGTAATTGCTATAACAAAAGATCTTCCTGATGTTGAAGGAGATCGCAAGTATCAGATATCAACCTTTGCCACAAAATTAGGAGTTCGGAACATTGCTTTCCTTGGTTCTGGAATTTTGTTGGTGAACTATATTGTTTCTGTTTTGGCAGCAATTTATATGCCTCAGGCTTTCAGGCGTTGGTTACTCATACCGGCTCATACGATTTTTGCAATAAGCTTGATTTACCAGGCATGGATATTAGAACAAGCAAATTATACCAAGGATGCAATATCAGGATTCTATCGATTCATATGGAATCTGTTCTATGCTGAGTATGCAATATTTCCTTTCATATAG
Predicted protein sequences of Glyma.02g168000
>Glyma.02g168000.1.p sequence-type=predicted peptide transcript=Glyma.02g168000.1 locus=Glyma.02g168000 ID=Glyma.02g168000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MELSLSPTSHRVPSTIPTLNSAKLSSTKATKSQQPLFLRFSKHFNSIGLHHHSHRCCSNAVPERPQRPSSIRACTGVGASGSDRPLAERLLDLKDACWRFLRPHTIRGTALGSFALVARALIENTNLIKWSLFFKAFCGLFALICGNGYIVGINQIYDISIDKVNKPYLPIAAGDLSVQSAWFLVIFFAAAGLSIVGLNFGPFIFSLYTLGLFLGTIYSVPPFRMKRFPVAAFLIIATVRGFLLNFGVYYATRAALGLAFEWSSPVVFITTFVTFFALVIAITKDLPDVEGDRKYQISTFATKLGVRNIAFLGSGILLVNYIVSVLAAIYMPQAFRRWLLIPAHTIFAISLIYQAWILEQANYTKDAISGFYRFIWNLFYAEYAIFPFI*

>Glyma.02g168000.2.p sequence-type=predicted peptide transcript=Glyma.02g168000.2 locus=Glyma.02g168000 ID=Glyma.02g168000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MELSLSPTSHRVPSTIPTLNSAKLSSTKATKSQQPLFLRFSKHFNSIGLHHHSHRCCSNAVPERPQRPSSIRACTGVGASGSDRPLAERLLDLKDACWRFLRPHTIRGTALGSLVNKPYLPIAAGDLSVQSAWFLVIFFAAAGLSIVGLNFGPFIFSLYTLGLFLGTIYSVPPFRMKRFPVAAFLIIATVRGFLLNFGVYYATRAALGLAFEWSSPVVFITTFVTFFALVIAITKDLPDVEGDRKYQISTFATKLGVRNIAFLGSGILLVNYIVSVLAAIYMPQAFRRWLLIPAHTIFAISLIYQAWILEQANYTKDAISGFYRFIWNLFYAEYAIFPFI*






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