SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.02g159200): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.02g159200): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.02g159200

Feature Type:gene_model
Chromosome:Gm02
Start:17656862
stop:17660760
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g159200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G55290.1AT NAD(P)-binding Rossmann-fold superfamily protein JGI N/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
KOG0725 KOG Reductases with broad range of substrate specificities JGI N/AIEA
PTHR24314Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24314:SF85Panther JGI N/AIEA
PTHR24322Panther FAMILY NOT NAMED JGI N/AIEA
PF00106PFAM short chain dehydrogenase JGI N/AIEA
FASYN-ELONG-PWYSoyCyc9 fatty acid elongation -- saturated Plant Metabolic Network ISS
PWY-5156SoyCyc9 superpathway of fatty acid biosynthesis II (plant) Plant Metabolic Network ISS
PWY-5971SoyCyc9 palmitate biosynthesis II (bacteria and plants) Plant Metabolic Network ISS
PWY-5973SoyCyc9 cis-vaccenate biosynthesis Plant Metabolic Network ISS
PWY-5989SoyCyc9 stearate biosynthesis II (bacteria and plants) Plant Metabolic Network ISS
PWY-7388SoyCyc9 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Plant Metabolic Network ISS
GN7V-67786SoyCyc9-rxn 3-oxoacyl-[ACP] reductase Plant Metabolic Network ISS

Expression Patterns of Glyma.02g159200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g159200 not represented in the dataset
Glyma.02g159200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.02g159200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g18620 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.02g159200
>Glyma.02g159200.2 sequence-type=transcript locus=Glyma.02g159200 ID=Glyma.02g159200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTCATAACCACTATTCAATGCCCCTTGGACTTCTCTATGTCTTCTTCCTTTAAACTTCCGTGCAATAAAGCTTATTGAATTAGTAGAACCACTGAACCGAAGCAATGGCTACGCAACTTTCCGACCGCCTCGAGCCATGGCACACCCTCGCCGGAAAAGTCGTAATGGTCACCGGCGCCTcctccggcctcggccgcgacttctgcctcgacctcggTCGGGCTGGCTGTCGGGTCGTCGTGGCGGCCCGCAGAGTCGACCGCCTCGAGTCCCTGTGCGACGAAATTAACAGCATGGCCGCCGGAGACGGTGGCCGAAGCCGCCGCGCCGTCGCCGTTGAACTCGATGTCGCTGCCGATGACCCCGCCGTCGACAAATACGTGCAGAAGGCGTGGGAGGCGTTTGGTCACATTGATGCTCTTATCAACAACGCTGGTGTCAGAGGGAATGTCAAATCACCTTTGGAATTGTCTGAGGAGGAATGGAACCATGCGTTCAGAACAAACTTAACTGGGACATGGTTGGTCTCAAAATATGTATGCAAACGCATGCGTGATGCACAAAGAAAAGGATCAATCATTAATATTGCTTCAATTGCTGGTTTGAACCGTGGTCAATTGCCTGGAGGTGCTGCATATTCATCCTCAAAAGCAGGCGTCAATATGCTAACAAGGGTCATGGCATTAGAATTGGGGGCACACAAAATCAGAGTGAATTCCATATCACCTGGACTTTTCAAATCTGAAATCACTGAAAAACTAATGGAGAAAAATTGGTTGAATAATGTGGCCATGAAAACAGTACCCTTGAGAAAATTTGGCACTTCTGATCCAGCATTAACATCGCTGGCTCGTTATTTAATTCACGATTCTTCTGAGTATGTGTCAGGCAACAATTTTGTTGTGGATGCTGGAGCCACCTTACCAGGTGTGCCTATTTATTCCTCCCTATAAACAAAGAATAAATTCTGCTCTATCCGGTGTTGGACTTGAGCTAAACAATTTTTTTATATGGTAAAATATTGAGGAGTATAGCATTATGTTGATTTACCAGTCGATATAAAAAATTGTGGTTACTTCCCATCCAACTATAAAATTAACGTAATCGAAATACTTCTCTTTTTTGTATTGAGTATGTGTGCAGTAATTGAACCCAAATAAATTTAGGATTGTTTGTTGGGAGAGGTGTCCACCTTTTTTTCCCCGTGATATCTTGAACAGAATTGTCTTTAAAGAAAAATATTTGTGAGAAACtatatatatatatatatatatatatatatatatatatatatatataAA

>Glyma.02g159200.3 sequence-type=transcript locus=Glyma.02g159200 ID=Glyma.02g159200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTATTTATTATATCTAGGATGATTGCAGTAAATATTGACTAACCTTTGGTGTACGTTGATGGGTTATAGGTATATTAATACAATATATTTTATTTTGCTGATTAAAAAAATATCATTTAATAATCAATTTTAATCAAAATAATTTTATAAAATCAATTTCATTCAAAAATAAATTTTCCAATGATCCATGATCAATTGCGTTCGCGTTCTGCCAAGGTAGTACTGATTTTTTTTTGTTAAAAGTAGGACATACATGTTTTACAACGTACGATTGCAGGGTAAACCAAATATGCACGCTCACTTTGAAATGTGCCATACTATAGAATTCTGTTGTGTAATGATTACTTACTGCTATAAAACTACTTGTGTTTGGTGTGTAGGGAATGTCAAATCACCTTTGGAATTGTCTGAGGAGGAATGGAACCATGCGTTCAGAACAAACTTAACTGGGACATGGTTGGTCTCAAAATATGTATGCAAACGCATGCGTGATGCACAAAGAAAAGGATCAATCATTAATATTGCTTCAATTGCTGGTTTGAACCGTGGTCAATTGCCTGGAGGTGCTGCATATTCATCCTCAAAAGCAGGCGTCAATATGCTAACAAGGGTCATGGCATTAGAATTGGGGGCACACAAAATCAGAGTGAATTCCATATCACCTGGACTTTTCAAATCTGAAATCACTGAAAAACTAATGGAGAAAAATTGGTTGAATAATGTGGCCATGAAAACAGTACCCTTGAGAAAATTTGGCACTTCTGATCCAGCATTAACATCGCTGGCTCGTTATTTAATTCACGATTCTTCTGAGTATGTGTCAGGCAACAATTTTGTTGTGGATGCTGGAGCCACCTTACCAGGTGTGCCTATTTATTCCTCCCTATAAACAAAGAATAAATTCTGCTCTATCCGGTGTTGGACTTGAGCTAAACAATTTTTTTATATGGTAAAATATTGAGGAGTATAGCATTATGTTGATTTACCAGTCGATATAAAAAATTGTGGTTACTTCCCATCCAACTATAAAATTAACGTAATCGAAATACTTCTCTTTTTTGTATTGAGTATGTGTGCAGTAATTGAACCCAAATAAATTTAGGATTGTTTGTTGGGAGAGGTGTCCACCTTTTTTTCCCCGTGATATCTTGAACAGAATTGTCTTTAAAGAAAAATATTTGTGAGAAACtatatatatatatatatatatatatatatatatatatatatatataAA
Coding sequences of Glyma.02g159200
>Glyma.02g159200.1 sequence-type=CDS polypeptide=Glyma.02g159200.1.p locus=Glyma.02g159200 ID=Glyma.02g159200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTACGCAACTTTCCGACCGCCTCGAGCCATGGCACACCCTCGCCGGAAAAGTCGTAATGGTCACCGGCGCCTCCTCCGGCCTCGGCCGCGACTTCTGCCTCGACCTCGGTCGGGCTGGCTGTCGGGTCGTCGTGGCGGCCCGCAGAGTCGACCGCCTCGAGTCCCTGTGCGACGAAATTAACAGCATGGCCGCCGGAGACGGTGGCCGAAGCCGCCGCGCCGTCGCCGTTGAACTCGATGTCGCTGCCGATGACCCCGCCGTCGACAAATACGTGCAGAAGGCGTGGGAGGCGTTTGGTCACATTGATGCTCTTATCAACAACGCTGGTGTCAGAGGGAATGTCAAATCACCTTTGGAATTGTCTGAGGAGGAATGGAACCATGCGTTCAGAACAAACTTAACTGGGACATGGTTGGTCTCAAAATATGTATGCAAACGCATGCGTGATGCACAAAGAAAAGGATCAATCATTAATATTGCTTCAATTGCTGGTTTGAACCGTGGTCAATTGCCTGGAGGTGCTGCATATTCATCCTCAAAAGCAGGCGTCAATATGCTAACAAGGGTCATGGCATTAGAATTGGGGGCACACAAAATCAGAGTGAATTCCATATCACCTGGACTTTTCAAATCTGAAATCACTGAAAAACTAATGGAGAAAAATTGGTTGAATAATGTGGCCATGAAAACAGTACCCTTGAGAAAATTTGGCACTTCTGATCCAGCATTAACATCGCTGGCTCGTTATTTAATTCACGATTCTTCTGAGTATGTGTCAGGCAACAATTTTGTTGTGGATGCTGGAGCCACCTTACCAGGTGTGCCTATTTATTCCTCCCTATAA

>Glyma.02g159200.2 sequence-type=CDS polypeptide=Glyma.02g159200.2.p locus=Glyma.02g159200 ID=Glyma.02g159200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTACGCAACTTTCCGACCGCCTCGAGCCATGGCACACCCTCGCCGGAAAAGTCGTAATGGTCACCGGCGCCTCCTCCGGCCTCGGCCGCGACTTCTGCCTCGACCTCGGTCGGGCTGGCTGTCGGGTCGTCGTGGCGGCCCGCAGAGTCGACCGCCTCGAGTCCCTGTGCGACGAAATTAACAGCATGGCCGCCGGAGACGGTGGCCGAAGCCGCCGCGCCGTCGCCGTTGAACTCGATGTCGCTGCCGATGACCCCGCCGTCGACAAATACGTGCAGAAGGCGTGGGAGGCGTTTGGTCACATTGATGCTCTTATCAACAACGCTGGTGTCAGAGGGAATGTCAAATCACCTTTGGAATTGTCTGAGGAGGAATGGAACCATGCGTTCAGAACAAACTTAACTGGGACATGGTTGGTCTCAAAATATGTATGCAAACGCATGCGTGATGCACAAAGAAAAGGATCAATCATTAATATTGCTTCAATTGCTGGTTTGAACCGTGGTCAATTGCCTGGAGGTGCTGCATATTCATCCTCAAAAGCAGGCGTCAATATGCTAACAAGGGTCATGGCATTAGAATTGGGGGCACACAAAATCAGAGTGAATTCCATATCACCTGGACTTTTCAAATCTGAAATCACTGAAAAACTAATGGAGAAAAATTGGTTGAATAATGTGGCCATGAAAACAGTACCCTTGAGAAAATTTGGCACTTCTGATCCAGCATTAACATCGCTGGCTCGTTATTTAATTCACGATTCTTCTGAGTATGTGTCAGGCAACAATTTTGTTGTGGATGCTGGAGCCACCTTACCAGGTGTGCCTATTTATTCCTCCCTATAA

>Glyma.02g159200.3 sequence-type=CDS polypeptide=Glyma.02g159200.3.p locus=Glyma.02g159200 ID=Glyma.02g159200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTTTACAACGTACGATTGCAGGGTAAACCAAATATGCACGCTCACTTTGAAATGTGCCATACTATAGAATTCTGTTGTGTAATGATTACTTACTGCTATAAAACTACTTGTGTTTGGTGTGTAGGGAATGTCAAATCACCTTTGGAATTGTCTGAGGAGGAATGGAACCATGCGTTCAGAACAAACTTAACTGGGACATGGTTGGTCTCAAAATATGTATGCAAACGCATGCGTGATGCACAAAGAAAAGGATCAATCATTAATATTGCTTCAATTGCTGGTTTGAACCGTGGTCAATTGCCTGGAGGTGCTGCATATTCATCCTCAAAAGCAGGCGTCAATATGCTAACAAGGGTCATGGCATTAGAATTGGGGGCACACAAAATCAGAGTGAATTCCATATCACCTGGACTTTTCAAATCTGAAATCACTGAAAAACTAATGGAGAAAAATTGGTTGAATAATGTGGCCATGAAAACAGTACCCTTGAGAAAATTTGGCACTTCTGATCCAGCATTAACATCGCTGGCTCGTTATTTAATTCACGATTCTTCTGAGTATGTGTCAGGCAACAATTTTGTTGTGGATGCTGGAGCCACCTTACCAGGTGTGCCTATTTATTCCTCCCTATAA
Predicted protein sequences of Glyma.02g159200
>Glyma.02g159200.1.p sequence-type=predicted peptide transcript=Glyma.02g159200.1 locus=Glyma.02g159200 ID=Glyma.02g159200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATQLSDRLEPWHTLAGKVVMVTGASSGLGRDFCLDLGRAGCRVVVAARRVDRLESLCDEINSMAAGDGGRSRRAVAVELDVAADDPAVDKYVQKAWEAFGHIDALINNAGVRGNVKSPLELSEEEWNHAFRTNLTGTWLVSKYVCKRMRDAQRKGSIINIASIAGLNRGQLPGGAAYSSSKAGVNMLTRVMALELGAHKIRVNSISPGLFKSEITEKLMEKNWLNNVAMKTVPLRKFGTSDPALTSLARYLIHDSSEYVSGNNFVVDAGATLPGVPIYSSL*

>Glyma.02g159200.2.p sequence-type=predicted peptide transcript=Glyma.02g159200.2 locus=Glyma.02g159200 ID=Glyma.02g159200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATQLSDRLEPWHTLAGKVVMVTGASSGLGRDFCLDLGRAGCRVVVAARRVDRLESLCDEINSMAAGDGGRSRRAVAVELDVAADDPAVDKYVQKAWEAFGHIDALINNAGVRGNVKSPLELSEEEWNHAFRTNLTGTWLVSKYVCKRMRDAQRKGSIINIASIAGLNRGQLPGGAAYSSSKAGVNMLTRVMALELGAHKIRVNSISPGLFKSEITEKLMEKNWLNNVAMKTVPLRKFGTSDPALTSLARYLIHDSSEYVSGNNFVVDAGATLPGVPIYSSL*

>Glyma.02g159200.3.p sequence-type=predicted peptide transcript=Glyma.02g159200.3 locus=Glyma.02g159200 ID=Glyma.02g159200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFYNVRLQGKPNMHAHFEMCHTIEFCCVMITYCYKTTCVWCVGNVKSPLELSEEEWNHAFRTNLTGTWLVSKYVCKRMRDAQRKGSIINIASIAGLNRGQLPGGAAYSSSKAGVNMLTRVMALELGAHKIRVNSISPGLFKSEITEKLMEKNWLNNVAMKTVPLRKFGTSDPALTSLARYLIHDSSEYVSGNNFVVDAGATLPGVPIYSSL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo