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Report for Sequence Feature Glyma.02g155200

Feature Type:gene_model
Chromosome:Gm02
Start:15896780
stop:15903906
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g155200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G02460.1AT DNA mismatch repair protein, putative JGI N/AIEA
GO:0006298GO-bp mismatch repair EnsemblGenomesN/AIEA
GO:0006298GO-bp mismatch repair JGI N/AIEA
GO:0032300GO-cc mismatch repair complex EnsemblGenomesN/AIEA
GO:0032389GO-cc MutLalpha complex EnsemblGenomesN/AIEA
GO:0003697GO-mf single-stranded DNA binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0016887GO-mf ATPase activity EnsemblGenomesN/AIEA
GO:0030983GO-mf mismatched DNA binding EnsemblGenomesN/AIEA
GO:0030983GO-mf mismatched DNA binding JGI N/AIEA
KOG1978 KOG DNA mismatch repair protein - MLH2/PMS1/Pms2 family JGI N/AIEA
PTHR10073Panther DNA MISMATCH REPAIR PROTEIN (MLH, PMS, MUTL) JGI N/AIEA
PTHR10073:SF9Panther MISMATCH REPAIR ENDONUCLEASE PMS2 JGI N/AIEA
PF01119PFAM DNA mismatch repair protein, C-terminal domain JGI N/AIEA
PF02518PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JGI N/AIEA
PF08676PFAM MutL C terminal dimerisation domain JGI N/AIEA

Expression Patterns of Glyma.02g155200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g155200
ParalogEvidenceComments
Glyma.10g019200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g155200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g17420 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g155200
>Glyma.02g155200.1 sequence-type=CDS polypeptide=Glyma.02g155200.1.p locus=Glyma.02g155200 ID=Glyma.02g155200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTAGTCGAAGCTCAAATCATCAAGCCTATCGGCAAGGGCATCGTTCACAGAATCTGCGCCGGTCAAGTCATCCTCGACCTCTCTTCCGCCGTCAAGGAACTCGTCGAAAACAGCTTGGACGCCGGCGCCACCAGCATCGAAATCTCCCTCAAAGACTTCGGCGAACAGTGGTTTCAAGTCATCGACAACGGTTGCGGCATTTCCCCAAACAATTTCAAGGTTCTTGCGCTGAAGCATCATACGTCAAAGTTATCGGAATTTCACGATCTTCAGTCTCTGACGACTTTTGGATTCCGAGGGGAGGCGCTGAGTTCGCTCTGCGCGTTGGGGAACTTGACCGTTGAAACGAGAACGGCGAGCGAACCGGTCGCAACGCACTTGACTTTTGATAATTCCGGTGTTCTTGTGGCGGAAAGGAAAACGGCACGGCAAATTGGCACCACTGTTATGGTTAAGAAGTTGTTCTCCAATTTGCCTGTGAGAAGCAAGGAGTTTAGTCGTAACATACGTAGGGAATATGGCAAGTTGGTTTCTCTATTGAATGCTTATGCCCTTATAGCGAAAGGAGTTCGTTTTGTTTGCACCAATACAACTGGTAAAAATGTGAGGTCTGTTGTTCTTAAGACGCAAGGAAGTGGTTCTCTTAAGGATAACGTCATAACAGTGCTTGGCATGAACACTTTCAGCTGCTTAGAGCCCGTGACATTGTCTATATCTGATTCTTGTAAGGTTGAAGGATTTCTTTCCAAGTCTGGACAGGGTAATGGACGCAATTTGGGGGATAGACAGTATTTTTTTGTGAATGGTAGACCGGTAGATATGCCTAAAGTTAGCAAACTTGTGAATGAGTTGTACAAGGGTGCAAACTCCAAACAGTATCCCATTGCTATTTTGAATTTTACGGTTCCTACTAGAGTGTATGATGTCAATGTGACTCCCGACAAGAGGAAAATATTTTTTTCTGAAGAAAATGCCATATTGCAAGCCCTGAGAGAGGGATTGCAACAAATTTATTCTGCTAGTAATGTCTGTTACTCTGTTAATGAAGTTATGTTGCCTGCTGAAAAAGAAGAGTGTGTTGAGTTGTGTTCCTCTCATGGGAAGTCTCCTATTGTAAGGAAACTATATTCCCCAAATGCCAGTTGTCCTCAGAAAGAGCAATGTAGTGAAAGTAACAATGGTAGTGTTTCTTTAGATGAAATTGATACTGAGTGCAACAATGATACCATTTCTCAGGATGAGCATGAGGAGAAACATATTACTGATTCCAAAAATGCTTCTGAATCTATTAATGAATATCGGTACACACATATTGATGAAGGGTTAATTTGTGAAAATGATGGGAGTTTAATGAACCAGGAGTTTACACTCAGAGCACATAGCGCTTCAAAGGATGACGATAGTGGAAGTCGGTCAGCGTGTCCTAGTAGTATTATACCTGATCAAGCTACCCTTGTCTCAAGGACAGTTGAGAGTGGCAGCACTTCTAGTAAATATTCATTTAACCATTCAAGACATGTTCAGTCCACTCTTAACAACTTTGTTTCTGTAAATAAAAGAAATCGTGATAGTGTCATTAGAGCCTTATCTGAAGTGCCTGTTCTTAGAAATCAAGCTCCTCATTGTCAATTGAAGACTGCAAATACTGAAACACAGGACTTGATTACAAGATCATCACTTTGTTTTGACCAAAGTGATGAACCTGCTAGGGCGAGTGAGATTGAATCTTTGAAGCAACTTAATCCTGATAATGTCTTCTACAAAAATGAAAATGCAGTTTCTTTTAAGGGTGACTCCTCTGTTAGAGAACCTAAATCTAATATGGAATTAGATCTAAAGAATAATACACCTCTAGGGGATACAGCATCAATTACTCCTTCTAGCATTGATATGATCACTACGGATGTTTTGGCCTCAGACCCTCCATTACATTCATCACCTGTGTGGTTAAATTCTTGCAAGTCTTCCAGTAACAAGATATGTTCCAACATGCAATTTTCTTTTCAAGAGCTTAAGAAAAGGAGAGAGAAGAGGCTTTCTCTGTTGCAATCCAGTAAATTTGGATGTGGAAAAGCTAAAGTCAAAAGTCACTATTCGGCTGCAACTTTGGAGATTTTACAATCAGAAATTGGAGAGCAGAAAGAAAGGGCCTTGGCAGCAGCAGCTACCGAACTTGAAAGATTTTTCAAGAAGGAAGACTTCAGCAGAATGAAGGTGATTGGGCAATTCAATCTTGGATTTATCATTTGTAAATTGGATCAAGATTTATTCATTGTGGACCAGCATGCTGCTGATGAGAAGTATAATTTTGAGCGTTTATCACAGTCAACCATCTTGAACCAACAACCTCTTCTTAGGCCAATAAAATTGGAGTTATCCCCTGAAGAAGAAATAGTTGCTTCGATGCACATGGACATAATCAGGAAGAATGGATTTACCTTGGAAGAGGATCCAAATGCACCGCCTGGATGCCGTTTTAAATTAAAGTCTGTCCCCTTCAGTAAAAACACTATGTTTGGAATTGAAGATGTTAAGGAGCTGATCTCTATCTTGTCTGATGGTGATGGTCATGTGGAATGTTCCATAGTTGGTAGCTATAAACTGGACACCTCAGATTCTGTTTGCCCTTCAAGAGTTCGTGCAATGTTGGCATCACGAGCATGTCGATCATCTATTATGGTTGGTGATGCACTTGGAAGAAATGAAATGCAGAAGATACTTGAGCATATGGCTGAGCTGAAATCCCCATGGAATTGTCCCCATGGCAGACCAACCATGCGCCATTTAGTCGACTTAACAAAAATTCACAAGAGCTATGAACTTACAATGCAGATGTAA
Predicted protein sequences of Glyma.02g155200
>Glyma.02g155200.1.p sequence-type=predicted peptide transcript=Glyma.02g155200.1 locus=Glyma.02g155200 ID=Glyma.02g155200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVVEAQIIKPIGKGIVHRICAGQVILDLSSAVKELVENSLDAGATSIEISLKDFGEQWFQVIDNGCGISPNNFKVLALKHHTSKLSEFHDLQSLTTFGFRGEALSSLCALGNLTVETRTASEPVATHLTFDNSGVLVAERKTARQIGTTVMVKKLFSNLPVRSKEFSRNIRREYGKLVSLLNAYALIAKGVRFVCTNTTGKNVRSVVLKTQGSGSLKDNVITVLGMNTFSCLEPVTLSISDSCKVEGFLSKSGQGNGRNLGDRQYFFVNGRPVDMPKVSKLVNELYKGANSKQYPIAILNFTVPTRVYDVNVTPDKRKIFFSEENAILQALREGLQQIYSASNVCYSVNEVMLPAEKEECVELCSSHGKSPIVRKLYSPNASCPQKEQCSESNNGSVSLDEIDTECNNDTISQDEHEEKHITDSKNASESINEYRYTHIDEGLICENDGSLMNQEFTLRAHSASKDDDSGSRSACPSSIIPDQATLVSRTVESGSTSSKYSFNHSRHVQSTLNNFVSVNKRNRDSVIRALSEVPVLRNQAPHCQLKTANTETQDLITRSSLCFDQSDEPARASEIESLKQLNPDNVFYKNENAVSFKGDSSVREPKSNMELDLKNNTPLGDTASITPSSIDMITTDVLASDPPLHSSPVWLNSCKSSSNKICSNMQFSFQELKKRREKRLSLLQSSKFGCGKAKVKSHYSAATLEILQSEIGEQKERALAAAATELERFFKKEDFSRMKVIGQFNLGFIICKLDQDLFIVDQHAADEKYNFERLSQSTILNQQPLLRPIKLELSPEEEIVASMHMDIIRKNGFTLEEDPNAPPGCRFKLKSVPFSKNTMFGIEDVKELISILSDGDGHVECSIVGSYKLDTSDSVCPSRVRAMLASRACRSSIMVGDALGRNEMQKILEHMAELKSPWNCPHGRPTMRHLVDLTKIHKSYELTMQM*






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