Glyma.02g145300

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Report for Sequence Feature Glyma.02g145300

Feature Type:	gene_model
Chromosome:	Gm02
Start:	15009322
stop:	15014177
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.02g145300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G03090.2	AT	methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA)	JGI	N/A	IEA
GO:0006552	GO-bp	leucine catabolic process	EnsemblGenomes	N/A	IEA
GO:0008152	GO-bp	metabolic process	JGI	N/A	IEA
GO:0005739	GO-cc	mitochondrion	EnsemblGenomes	N/A	IEA
GO:0005759	GO-cc	mitochondrial matrix	EnsemblGenomes	N/A	IEA
GO:0000166	GO-mf	nucleotide binding	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	JGI	N/A	IEA
GO:0004075	GO-mf	biotin carboxylase activity	EnsemblGenomes	N/A	IEA
GO:0004485	GO-mf	methylcrotonoyl-CoA carboxylase activity	EnsemblGenomes	N/A	IEA
GO:0005524	GO-mf	ATP binding	EnsemblGenomes	N/A	IEA
GO:0005524	GO-mf	ATP binding	JGI	N/A	IEA
GO:0008716	GO-mf	D-alanine-D-alanine ligase activity	JGI	N/A	IEA
GO:0016874	GO-mf	ligase activity	EnsemblGenomes	N/A	IEA
GO:0016874	GO-mf	ligase activity	JGI	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
KOG0238	KOG	3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit	JGI	N/A	IEA
PTHR18866	Panther	CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE	JGI	N/A	IEA
PTHR18866:SF18	Panther		JGI	N/A	IEA
PF00289	PFAM	Carbamoyl-phosphate synthase L chain, N-terminal domain	JGI	N/A	IEA
PF00364	PFAM	Biotin-requiring enzyme	JGI	N/A	IEA
PF02785	PFAM	Biotin carboxylase C-terminal domain	JGI	N/A	IEA
PF02786	PFAM	Carbamoyl-phosphate synthase L chain, ATP binding domain	JGI	N/A	IEA
LEU-DEG2-PWY	SoyCyc9	L-leucine degradation I	Plant Metabolic Network		ISS
GN7V-56544	SoyCyc9-rxn	methylcrotonoyl-CoA carboxylase	Plant Metabolic Network		ISS

Proteins Associated with Glyma.02g145300

Locus	Gene Symbol	Protein Name
	MCCA	3-methylcrotonyl-CoA carboxylase 1

Expression Patterns of Glyma.02g145300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.02g145300

Paralog	Evidence	Comments
Glyma.10g028700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g145300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma02g16390	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.02g145300

Limit To All Plant Sequences

>Glyma.02g145300.1 sequence-type=CDS polypeptide=Glyma.02g145300.1.p locus=Glyma.02g145300 ID=Glyma.02g145300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCTCTGGCGTTGCTCCGCAGAAAGCTTATCATCACCAGAACCACACTCTCCTACTCGCACGTGCGCGCACGAGCCTTCTCCGCGGGAAACAACAAACACCGCATCGAGAAGATTCTAGTAGCCAACCGCGGCGAAATCGCTTGCAGGATCACGCGGACCGCGCGGAGGCTCGGCATTCAAACCGTCGCCGTTTACAGCGACGCCGACAGGGATTCGCTCCACGTGGCAACCGCCGACGAGGCCATTCGAATCGGACCGCCGCCGGCGCGGCTCAGTTACTTGAACGGAGCCTCCATCGTCGACGCCGCAATTCGCTCCGGCGCGCAGGCTATTCACCCTGGGTATGGATTCTTGTCGGAGAGTGCTGACTTCGCCAAGCTCTGTGAGGAGAGTGGTCTCACTTTTATAGGGCCTCCTGCGTCTGCTATTCGAGATATGGGTGACAAGAGTGCATCGAAGAGAATAATGGGAGCTGCAGGTGTGCCTCTTGTACCTGGATATCACGGATATGATCAAGATATTGAAAAAATGAAGTTGGAAGCTGATAGAATTGGATATCCAGTCCTAATTAAGCCAACTCATGGTGGAGGTGGAAAGGGTATGAGGATTGTACACACTCCAGATGAGTTTGTTGAATCCTTCTTAGCTGCACAACGGGAAGCAGCTGCTTCTTTTGGCGTCAACACAATATTGTTGGAGAAGTATATTACACGGCCAAGACACATAGAAGTCCAGATATTTGGGGATAAGCATGGGAATGTTCTGCATTTGTATGAGCGAGATTGCAGTGTTCAGAGAAGACACCAAAAAATAATTGAAGAAGCTCCAGCTCCAAACATTTCTGCTGACTTTCGTGCACAATTGGGTGTAGCCGCTGTTTCAGCTGCAAAGGCAGTTAATTATTACAATGCTGGGACTGTGGAGTTTATAGTTGATACAGTCTCTGATGAATTTTACTTTATGGAGATGAATACACGTCTTCAGGTTGAGCATCCTGTTACAGAAATGATTGTTGGTCAGGATCTTGTTGAATGGCAAATCCTTGTTGCCAATGGAGAAGCTCTTCCATTGAGTCAATCACAAGTACCCTTATCAGGTCATGCTTTTGAAGCTCGAATCTATGCTGAAAATGTTCAAAAAGGGTTTCTTCCAGCAACTGGAGTTCTACACCATTATCATGTTCCAGTCTCATCTGCAGTCCGAGTGGAGACTGGAGTTAAAGAAGGAGACAAAGTTAGCATGCACTATGATCCTATGATTGCTAAGCTTGTGGTGTGGGGAGAAAATCGTGCTGCTGCCTTGGTCAAACTCAAGGATAGTCTGTCAAAGTTTCAGGTTGCAGGTCTGCCAACCAATGTCAACTTTCTTCAAAAGCTTGCTAATCACAGGGCATTTGCAAATGGCAATGTGGAGACTCATTTTATTGATAACTACAAAGAAGACCTCTTTGTTGATGCTAACAATTCAGTGTCTGTGAAAGAAGCATATGAAGCTGCTAGACTTAATGCATCCCTGGTGGCCGCATGCCTCATTGAAAAAGAGCATTTCATATTGGCTAGAAATCCACCTGGGGGCAGCAGCTTGCTCCCTATATGGTATTCTTCTCCACCTTTCAGAATCCATCATCAAGCTAAGCGTAGAATGGAACTTGAGTGGGATAATGAATATGGTAGTGGTAGCTCAAAGATCATGAAGCTTACCATCACTTATCAGCCTGATGGGAGATACCTAATTGAGACAGAACAAAATGGATCTCCTGTTTTAGAAGTGAAATCAACATATGTAAAAGATAACTATTTTAGAGTTGAAGCTGCTGGTGTAATCAATGATGTTAATGTAGCTGTTTATTCAAAGGATCAAATAAGGCATATTCATATTTGGCAAGGGTCCTGTCATCATTATTTCAGAGAGAAACTAGGCCTGGAGCTGTCTGAGGATGAAGAATCCCAACATAAACCCAAAGTTGAAACATCAGCCAACCCTCAAGGGACAGTTGTAGCACCCATGGCAGGCTTGGTAGTTAAGGTTCTAGTGGAGAACAAGACAAGAGTGGAGGAAGGACAACCTGTGTTAGTATTGGAAGCAATGAAGATGGAGCATGTTGTAAAGGCACCTTCTTCTGGCTATGTGCATGGGCTTCAACTTATGGTGGGTGAACAGGTTTCAGATGGCAGTGTTCTTTTCAGTGTAAAGGTTCGTTAA

Predicted protein sequences of Glyma.02g145300

Limit To All Plant Sequences

>Glyma.02g145300.1.p sequence-type=predicted peptide transcript=Glyma.02g145300.1 locus=Glyma.02g145300 ID=Glyma.02g145300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASLALLRRKLIITRTTLSYSHVRARAFSAGNNKHRIEKILVANRGEIACRITRTARRLGIQTVAVYSDADRDSLHVATADEAIRIGPPPARLSYLNGASIVDAAIRSGAQAIHPGYGFLSESADFAKLCEESGLTFIGPPASAIRDMGDKSASKRIMGAAGVPLVPGYHGYDQDIEKMKLEADRIGYPVLIKPTHGGGGKGMRIVHTPDEFVESFLAAQREAAASFGVNTILLEKYITRPRHIEVQIFGDKHGNVLHLYERDCSVQRRHQKIIEEAPAPNISADFRAQLGVAAVSAAKAVNYYNAGTVEFIVDTVSDEFYFMEMNTRLQVEHPVTEMIVGQDLVEWQILVANGEALPLSQSQVPLSGHAFEARIYAENVQKGFLPATGVLHHYHVPVSSAVRVETGVKEGDKVSMHYDPMIAKLVVWGENRAAALVKLKDSLSKFQVAGLPTNVNFLQKLANHRAFANGNVETHFIDNYKEDLFVDANNSVSVKEAYEAARLNASLVAACLIEKEHFILARNPPGGSSLLPIWYSSPPFRIHHQAKRRMELEWDNEYGSGSSKIMKLTITYQPDGRYLIETEQNGSPVLEVKSTYVKDNYFRVEAAGVINDVNVAVYSKDQIRHIHIWQGSCHHYFREKLGLELSEDEESQHKPKVETSANPQGTVVAPMAGLVVKVLVENKTRVEEGQPVLVLEAMKMEHVVKAPSSGYVHGLQLMVGEQVSDGSVLFSVKVR*

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