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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G03090.2 | AT | methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) | JGI | N/A | IEA |
| GO:0006552 | GO-bp | leucine catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0005739 | GO-cc | mitochondrion | EnsemblGenomes | N/A | IEA |
| GO:0005759 | GO-cc | mitochondrial matrix | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
| GO:0004075 | GO-mf | biotin carboxylase activity | EnsemblGenomes | N/A | IEA |
| GO:0004485 | GO-mf | methylcrotonoyl-CoA carboxylase activity | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0008716 | GO-mf | D-alanine-D-alanine ligase activity | JGI | N/A | IEA |
| GO:0016874 | GO-mf | ligase activity | EnsemblGenomes | N/A | IEA |
| GO:0016874 | GO-mf | ligase activity | JGI | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| KOG0238 | KOG | 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit | JGI | N/A | IEA |
| PTHR18866 | Panther | CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE | JGI | N/A | IEA |
| PTHR18866:SF18 | Panther | JGI | N/A | IEA | |
| PF00289 | PFAM | Carbamoyl-phosphate synthase L chain, N-terminal domain | JGI | N/A | IEA |
| PF00364 | PFAM | Biotin-requiring enzyme | JGI | N/A | IEA |
| PF02785 | PFAM | Biotin carboxylase C-terminal domain | JGI | N/A | IEA |
| PF02786 | PFAM | Carbamoyl-phosphate synthase L chain, ATP binding domain | JGI | N/A | IEA |
| LEU-DEG2-PWY | SoyCyc9 | L-leucine degradation I | Plant Metabolic Network | ISS | |
| GN7V-56544 | SoyCyc9-rxn | methylcrotonoyl-CoA carboxylase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| MCCA | 3-methylcrotonyl-CoA carboxylase 1 |
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Glyma.02g145300 not represented in the dataset |
Glyma.02g145300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.10g028700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma02g16390 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.02g145300.1 sequence-type=CDS polypeptide=Glyma.02g145300.1.p locus=Glyma.02g145300 ID=Glyma.02g145300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTTCTCTGGCGTTGCTCCGCAGAAAGCTTATCATCACCAGAACCACACTCTCCTACTCGCACGTGCGCGCACGAGCCTTCTCCGCGGGAAACAACAAACACCGCATCGAGAAGATTCTAGTAGCCAACCGCGGCGAAATCGCTTGCAGGATCACGCGGACCGCGCGGAGGCTCGGCATTCAAACCGTCGCCGTTTACAGCGACGCCGACAGGGATTCGCTCCACGTGGCAACCGCCGACGAGGCCATTCGAATCGGACCGCCGCCGGCGCGGCTCAGTTACTTGAACGGAGCCTCCATCGTCGACGCCGCAATTCGCTCCGGCGCGCAGGCTATTCACCCTGGGTATGGATTCTTGTCGGAGAGTGCTGACTTCGCCAAGCTCTGTGAGGAGAGTGGTCTCACTTTTATAGGGCCTCCTGCGTCTGCTATTCGAGATATGGGTGACAAGAGTGCATCGAAGAGAATAATGGGAGCTGCAGGTGTGCCTCTTGTACCTGGATATCACGGATATGATCAAGATATTGAAAAAATGAAGTTGGAAGCTGATAGAATTGGATATCCAGTCCTAATTAAGCCAACTCATGGTGGAGGTGGAAAGGGTATGAGGATTGTACACACTCCAGATGAGTTTGTTGAATCCTTCTTAGCTGCACAACGGGAAGCAGCTGCTTCTTTTGGCGTCAACACAATATTGTTGGAGAAGTATATTACACGGCCAAGACACATAGAAGTCCAGATATTTGGGGATAAGCATGGGAATGTTCTGCATTTGTATGAGCGAGATTGCAGTGTTCAGAGAAGACACCAAAAAATAATTGAAGAAGCTCCAGCTCCAAACATTTCTGCTGACTTTCGTGCACAATTGGGTGTAGCCGCTGTTTCAGCTGCAAAGGCAGTTAATTATTACAATGCTGGGACTGTGGAGTTTATAGTTGATACAGTCTCTGATGAATTTTACTTTATGGAGATGAATACACGTCTTCAGGTTGAGCATCCTGTTACAGAAATGATTGTTGGTCAGGATCTTGTTGAATGGCAAATCCTTGTTGCCAATGGAGAAGCTCTTCCATTGAGTCAATCACAAGTACCCTTATCAGGTCATGCTTTTGAAGCTCGAATCTATGCTGAAAATGTTCAAAAAGGGTTTCTTCCAGCAACTGGAGTTCTACACCATTATCATGTTCCAGTCTCATCTGCAGTCCGAGTGGAGACTGGAGTTAAAGAAGGAGACAAAGTTAGCATGCACTATGATCCTATGATTGCTAAGCTTGTGGTGTGGGGAGAAAATCGTGCTGCTGCCTTGGTCAAACTCAAGGATAGTCTGTCAAAGTTTCAGGTTGCAGGTCTGCCAACCAATGTCAACTTTCTTCAAAAGCTTGCTAATCACAGGGCATTTGCAAATGGCAATGTGGAGACTCATTTTATTGATAACTACAAAGAAGACCTCTTTGTTGATGCTAACAATTCAGTGTCTGTGAAAGAAGCATATGAAGCTGCTAGACTTAATGCATCCCTGGTGGCCGCATGCCTCATTGAAAAAGAGCATTTCATATTGGCTAGAAATCCACCTGGGGGCAGCAGCTTGCTCCCTATATGGTATTCTTCTCCACCTTTCAGAATCCATCATCAAGCTAAGCGTAGAATGGAACTTGAGTGGGATAATGAATATGGTAGTGGTAGCTCAAAGATCATGAAGCTTACCATCACTTATCAGCCTGATGGGAGATACCTAATTGAGACAGAACAAAATGGATCTCCTGTTTTAGAAGTGAAATCAACATATGTAAAAGATAACTATTTTAGAGTTGAAGCTGCTGGTGTAATCAATGATGTTAATGTAGCTGTTTATTCAAAGGATCAAATAAGGCATATTCATATTTGGCAAGGGTCCTGTCATCATTATTTCAGAGAGAAACTAGGCCTGGAGCTGTCTGAGGATGAAGAATCCCAACATAAACCCAAAGTTGAAACATCAGCCAACCCTCAAGGGACAGTTGTAGCACCCATGGCAGGCTTGGTAGTTAAGGTTCTAGTGGAGAACAAGACAAGAGTGGAGGAAGGACAACCTGTGTTAGTATTGGAAGCAATGAAGATGGAGCATGTTGTAAAGGCACCTTCTTCTGGCTATGTGCATGGGCTTCAACTTATGGTGGGTGAACAGGTTTCAGATGGCAGTGTTCTTTTCAGTGTAAAGGTTCGTTAA
>Glyma.02g145300.1.p sequence-type=predicted peptide transcript=Glyma.02g145300.1 locus=Glyma.02g145300 ID=Glyma.02g145300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASLALLRRKLIITRTTLSYSHVRARAFSAGNNKHRIEKILVANRGEIACRITRTARRLGIQTVAVYSDADRDSLHVATADEAIRIGPPPARLSYLNGASIVDAAIRSGAQAIHPGYGFLSESADFAKLCEESGLTFIGPPASAIRDMGDKSASKRIMGAAGVPLVPGYHGYDQDIEKMKLEADRIGYPVLIKPTHGGGGKGMRIVHTPDEFVESFLAAQREAAASFGVNTILLEKYITRPRHIEVQIFGDKHGNVLHLYERDCSVQRRHQKIIEEAPAPNISADFRAQLGVAAVSAAKAVNYYNAGTVEFIVDTVSDEFYFMEMNTRLQVEHPVTEMIVGQDLVEWQILVANGEALPLSQSQVPLSGHAFEARIYAENVQKGFLPATGVLHHYHVPVSSAVRVETGVKEGDKVSMHYDPMIAKLVVWGENRAAALVKLKDSLSKFQVAGLPTNVNFLQKLANHRAFANGNVETHFIDNYKEDLFVDANNSVSVKEAYEAARLNASLVAACLIEKEHFILARNPPGGSSLLPIWYSSPPFRIHHQAKRRMELEWDNEYGSGSSKIMKLTITYQPDGRYLIETEQNGSPVLEVKSTYVKDNYFRVEAAGVINDVNVAVYSKDQIRHIHIWQGSCHHYFREKLGLELSEDEESQHKPKVETSANPQGTVVAPMAGLVVKVLVENKTRVEEGQPVLVLEAMKMEHVVKAPSSGYVHGLQLMVGEQVSDGSVLFSVKVR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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