Glyma.02g143500

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.02g143500

Feature Type:	gene_model
Chromosome:	Gm02
Start:	14814133
stop:	14819756
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.02g143500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G63420.1	AT	Ggamma-subunit 1	JGI	N/A	IEA
GO:0007186	GO-bp	G-protein coupled receptor signaling pathway	EnsemblGenomes	N/A	IEA
GO:0007186	GO-bp	G-protein coupled receptor signaling pathway	JGI	N/A	IEA
GO:0005834	GO-cc	heterotrimeric G-protein complex	EnsemblGenomes	N/A	IEA
GO:0005834	GO-cc	heterotrimeric G-protein complex	JGI	N/A	IEA
GO:0004871	GO-mf	signal transducer activity	EnsemblGenomes	N/A	IEA
GO:0004871	GO-mf	signal transducer activity	JGI	N/A	IEA

Proteins Associated with Glyma.02g143500

Locus	Gene Symbol	Protein Name
	AMT4.5	ammonium transporter AMT4.5

Expression Patterns of Glyma.02g143500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.02g143500

Paralog	Evidence	Comments
Glyma.10g030900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g143500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma02g16190	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.02g143500

Limit To All Plant Sequences

>Glyma.02g143500.2 sequence-type=transcript locus=Glyma.02g143500 ID=Glyma.02g143500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTCTCATTATCCAAGTTGTTGCTGTTGTCTGCCAAACTGGAATGACCAGACCAAGTCATCTGAGGAAAACAAAAGCGCTTCGCAACAGTGTCTTCTTAATGGTTAGCACTTAAGCAGAGTTTAAAGGCATGAAAATGACAGCAGCAAAAGAGAAGAAAAAAGGCTCGCTTTTTTATGGCCTCATATAATTTCGATTTCGATGGGCGCGCGGAGCGCATGTAGAAAGAGAAAGGGCTTTTTTCTGAGTAATAGGATTAGTGAAAAGAAAGAAAGCACTTAAGACTTTCCTTGTTTTTTTCTTTTCCTCTGTAAATAAAATGTGTGTTATTATTATCATTATTACTGCATAGTGTTTGTTTCAGATCTGTATCGTATTATTAAGCACAACCAAGCAAGGGTGCAAGGTGGGGGTGttttttttttttttttttGCTGGATGAGTGGTAGCTGACACTCGCTTATGGCGTCTGAAACGGCGTCGTCGGCGGATGAAGAAACCGCTGTTGTTGTTGTTTCAGCTGCGGGTGCAGGAGGGACTGATAAGAGAGGCAAGCACCGGATTCTTGCCGAATTGAAGCGTCTCGACCAAGACTCCATGTTTCTTCAGGAAGAATTGGAAGAGCTTGAGAAAACAGAAAATGTGTCGACCATATGCACAGATTTTGTCAACTTGAGGTCTAAACAATTTCACTTGACGTAATGCAGATTGCTACAAAACATGGAAAGTAGGCCTGATCCATTACTCCCAGAAGTCCATGGACCGGTGAACCTCTTATGGGATAGATGGTTTGAAGGGCCTCAAGATCCACAAGCATGTAGATGTTGGATACTTTGATTTGAAGCTGTGTCAATTGCCATGCGTTGCAAATAGGATGCCACATATAACTGCATTAAAGTGACTCTGGAGCTGAAGAAAATGTTTGATGACATCTTAATACCACGCACACTAATTCTTTAATGGATCCTTGCTTTTATTACATTAGATTCTGATCTGAATGCAGTTTATATATAATCACATTCATTTACTGCATTCAATTGAGAAATATCATTATTTGTGCTTGTAATCCCAATCCAAATGTTAATACACCTTGGTGGTAACTTTCATGTGTGCATGAGACATTATTGACATTTTAGCATCATTTAGCCTTGAAGGTGATGGCTTTTGGAAAGGTCTTGCAATGGTTTGACGAGTCATCAACTAGTCCTGAATGATACGAGGTTTTCTGGGCAGACCTCTTGGGGTTGGGAGAGCAAAGAAAGTTAATAATCCCCCATCTGAGTCATTTCACAATTAAATGTTATTATAAGATTTTGTAATCATGTTACTTTTAAGCCTAACCCTGTGTTTCGATGAGGCAATCTAAGCTG

Coding sequences of Glyma.02g143500

Limit To All Plant Sequences

>Glyma.02g143500.1 sequence-type=CDS polypeptide=Glyma.02g143500.1.p locus=Glyma.02g143500 ID=Glyma.02g143500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTCTGAAACGGCGTCGTCGGCGGATGAAGAAACCGCTGTTGTTGTTGTTTCAGCTGCGGGTGCAGGAGGGACTGATAAGAGAGGCAAGCACCGGATTCTTGCCGAATTGAAGCGTCTCGACCAAGACTCCATGTTTCTTCAGGAAGAATTGGAAGAGCTTGAGAAAACAGAAAATGTGTCGACCATATGCACAGAATTGCTACAAAACATGGAAAGTAGGCCTGATCCATTACTCCCAGAAGTCCATGGACCGGTGAACCTCTTATGGGATAGATGGTTTGAAGGGCCTCAAGATCCACAAGCATGTAGATGTTGGATACTTTGA

>Glyma.02g143500.2 sequence-type=CDS polypeptide=Glyma.02g143500.2.p locus=Glyma.02g143500 ID=Glyma.02g143500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTCTGAAACGGCGTCGTCGGCGGATGAAGAAACCGCTGTTGTTGTTGTTTCAGCTGCGGGTGCAGGAGGGACTGATAAGAGAGGCAAGCACCGGATTCTTGCCGAATTGAAGCGTCTCGACCAAGACTCCATGTTTCTTCAGGAAGAATTGGAAGAGCTTGAGAAAACAGAAAATGTGTCGACCATATGCACAGATTTTGTCAACTTGAGGTCTAAACAATTTCACTTGACGTAA

Predicted protein sequences of Glyma.02g143500

Limit To All Plant Sequences

>Glyma.02g143500.1.p sequence-type=predicted peptide transcript=Glyma.02g143500.1 locus=Glyma.02g143500 ID=Glyma.02g143500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASETASSADEETAVVVVSAAGAGGTDKRGKHRILAELKRLDQDSMFLQEELEELEKTENVSTICTELLQNMESRPDPLLPEVHGPVNLLWDRWFEGPQDPQACRCWIL*

>Glyma.02g143500.2.p sequence-type=predicted peptide transcript=Glyma.02g143500.2 locus=Glyma.02g143500 ID=Glyma.02g143500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASETASSADEETAVVVVSAAGAGGTDKRGKHRILAELKRLDQDSMFLQEELEELEKTENVSTICTDFVNLRSKQFHLT*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain