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Report for Sequence Feature Glyma.02g143200

Feature Type:gene_model
Chromosome:Gm02
Start:14770876
stop:14772613
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g143200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G54560.1AT histone H2A 11 JGI N/AIEA
GO:0006342GO-bp chromatin silencing EnsemblGenomesN/AIEA
GO:0000786GO-cc nucleosome EnsemblGenomesN/AIEA
GO:0000790GO-cc nuclear chromatin EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005694GO-cc chromosome EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0046982GO-mf protein heterodimerization activity EnsemblGenomesN/AIEA
KOG1757 KOG Histone 2A JGI N/AIEA
PTHR23430Panther HISTONE H2A JGI N/AIEA
PF00125PFAM Core histone H2A/H2B/H3/H4 JGI N/AIEA

Expression Patterns of Glyma.02g143200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g143200
ParalogEvidenceComments
Glyma.10g031200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g143200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g16150 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g143200
>Glyma.02g143200.1 sequence-type=CDS polypeptide=Glyma.02g143200.1.p locus=Glyma.02g143200 ID=Glyma.02g143200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGGAAAAGGAGGGAAGGGGCTTCTTGCAGCGAAAACCACCGCGGCGAATAAGGACAAAGACAAGGACAAGAAGAGACCTATTTCTCGCTCTTCCCGTGCTGGAATCCAGTTTCCTGTGGGACGTATCCATAGGCAGCTGAAACAAAGGGTCCAAGCCAATGGACGTGTTGGGGCAACAGCTGCAGTGTACTTAGCCTCAATTCTAGAGTATCTGACTGCTGAAGTTCTTGAACTTGCTGGGAATGCAAGCAAGGATCTGAAGGTGAAGAGGATCACACCAAGGCATTTGCAGCTGGCTATCAGGGGAGATGAGGAGCTGGACACTCTTATCAAAGGGACCATTGCTGGTGGTGGTGTCATTCCTCACATTCACAAGTCCTTGATCAACAAAACCGCCAAGGATTGA
Predicted protein sequences of Glyma.02g143200
>Glyma.02g143200.1.p sequence-type=predicted peptide transcript=Glyma.02g143200.1 locus=Glyma.02g143200 ID=Glyma.02g143200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAGKGGKGLLAAKTTAANKDKDKDKKRPISRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKD*






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