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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G43750.1 | AT | O-acetylserine (thiol) lyase B | JGI | N/A | IEA |
| GO:0006535 | GO-bp | cysteine biosynthetic process from serine | EnsemblGenomes | N/A | IEA |
| GO:0008652 | GO-bp | cellular amino acid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0019344 | GO-bp | cysteine biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0004124 | GO-mf | cysteine synthase activity | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| KOG1252 | KOG | Cystathionine beta-synthase and related enzymes | JGI | N/A | IEA |
| PTHR10314 | Panther | SER/THR DEHYDRATASE, TRP SYNTHASE | JGI | N/A | IEA |
| PTHR10314:SF8 | Panther | CYSTEINE SYNTHASE | JGI | N/A | IEA |
| PF00291 | PFAM | Pyridoxal-phosphate dependent enzyme | JGI | N/A | IEA |
| CYSTSYN-PWY | SoyCyc9 | L-cysteine biosynthesis I | Plant Metabolic Network | ISS | |
| GN7V-47216 | SoyCyc9-rxn | cysteine synthase | Plant Metabolic Network | ISS |
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Glyma.02g138400 not represented in the dataset |
Glyma.02g138400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.07g206800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma02g15640 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.02g138400.1 sequence-type=CDS polypeptide=Glyma.02g138400.1.p locus=Glyma.02g138400 ID=Glyma.02g138400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTTCTTCTGCTTCCTTAATCAACTCGTTGACTTGCTCTTCGCCTGCACCCACTCAGCACTGTTTCGCCTTCACCCGCACCACCGCCACCGCTACCGCCACGTCACTGAGACAATTCAACAGCCACCGTCCGCCCCCACTCACCACGAGGATCTCCTCGTCGCCTTCCACCGTTGTCTGCAAAGCTGTCTCCGTTAAGCCCCAAACCGAAACCGAAGGTCTCAACATTGCTGACGATGTCACACAGCTCATAGGGAAAACGCCGATGGTTTACCTCAACAATATCGTGAAGGGTTCTGTGGCCAATATTGCTGCGAAGCTTGAGATTATGGAGCCCTGTTGTAGTGTCAAGGACAGGATTGGTTTTAGTATGATAAATGATGCTGAGCAGAGAGGAGCTATAACACCTGGGAAGAGTATATTGGTGGAACCTACTAGTGGGAACACAGGAATTGGTCTTGCCTTTATAGCAGCTTCAAGAGGATATAAGCTAATTTTGACAATGCCTGCTTCAATGAGTTTAGAAAGACGGGTTCTTTTGAAAGCATTTGGGGCCGAGCTTGTTTTGACTGATGCAGCAAAGGGCATGAATGGAGCAGTACAAAAAGCTGAAGAAATTTTAAAAAGTACCCCCAATTCATACATGCTTCAACAATTTGATAATCCTTCAAATCCTAAGGTTCATTATGAGACAACTGGCCCGGAGATATGGGAAGATACTAGAGGAAAGATAGATATTTTAGTTGCAGGAATTGGAACCGGTGGAACTGTTTCTGGAGCTGGCCAATTCCTAAAACAACAAAATCCGAAAATACAGGTTATTGGCGTAGAGCCTCTGGAAAGCAACATACTTACAGGTGGAAAGCCAGGACCTCACAAAATTCAGGGTATTGGGGCTGGTTTTGTGCCCAGGAATTTGGATCAAGATGTGCTTGATGAAGTTATAGCGATATCAAGTGATGAAGCAGTTGAAACTGCAAAGCAATTAGCACTCCAGGAAGGCTTGCTGGTGGGAATTTCTTCAGGAGCTGCAGCTGCAGCTGCTTTGAAGGTTGGAAAGAGGCCTGAGAATGCAGGAAAGCTTATTGGGGTTGTCTTCCCAAGCTTTGGTGAAAGATATTTGTCAACTATTCTTTTCCAGTCAATACGGGAAGAATGCGAGAAAATGCAACCTGAGCCATGA
>Glyma.02g138400.1.p sequence-type=predicted peptide transcript=Glyma.02g138400.1 locus=Glyma.02g138400 ID=Glyma.02g138400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASSASLINSLTCSSPAPTQHCFAFTRTTATATATSLRQFNSHRPPPLTTRISSSPSTVVCKAVSVKPQTETEGLNIADDVTQLIGKTPMVYLNNIVKGSVANIAAKLEIMEPCCSVKDRIGFSMINDAEQRGAITPGKSILVEPTSGNTGIGLAFIAASRGYKLILTMPASMSLERRVLLKAFGAELVLTDAAKGMNGAVQKAEEILKSTPNSYMLQQFDNPSNPKVHYETTGPEIWEDTRGKIDILVAGIGTGGTVSGAGQFLKQQNPKIQVIGVEPLESNILTGGKPGPHKIQGIGAGFVPRNLDQDVLDEVIAISSDEAVETAKQLALQEGLLVGISSGAAAAAALKVGKRPENAGKLIGVVFPSFGERYLSTILFQSIREECEKMQPEP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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